Clone Sequence Records
BS08715.3prime Sequence
854 bp (835 high quality bases) assembled on 2006-01-11
> BS08715.3prime
ATGGTCTAGAAAGCTTTTACAGCTTCTCGGAGAACTCGTAGGGTCGACCC
CCATTTTCGACCTTGTAGTCCGGCTCGAAGCCGGGATTCACGTGCTGTCC
CTGGTTCTGCAGAGCGCTTGCCGCCACCTCGGCGTGACTGCGGCTCCTAC
TTATCTGCGTGGAGTTCCGCATGCCGTAACAGAAGTAAATCACGTAGCCG
ATCACGATCCAGATGAGGAAGCGGATCCATGTGTTCAGGTCCAGCTGAAA
CATCAGGTACAAATTCGCAAAGACGCTGAGGCACGGCACGAACGGCACTA
GCGGCACCTTGAACGTGAGCTCAATGGTCGACACCGGCTGCATGCCGATC
ACAACGCAGATGAGGATTAGCACAGCGCCCACCAAGCTGAGCGCCACAAT
TCCGCCGGTGCTGTCCAGGTCGAAGACTTTCTGGAGGGAGCACCAGACCA
GGCAAAAGATGGCGAACACCACAATGCCGACTTTGGTGATGGACGAGGTC
ATAGAATTGGGCTCCCGGAAGGAGTTGCCGTTGAAGAATTGCCGGAAAAC
ATTCGGTGCCTTGACAGACACCAGCTTGGTCATCTCCTCGTCCTGGTAGC
GCAGCACTAGCACGCAAATTGCCACGATGGTGTATGCTAACAGGGTTCCG
ATGGACATCATGTCCACAAGCTGGTCCAGGTTAAAGAGCATGGCCATTAT
GGACGCAAAGATTCCAGACACAATGGTGGCCAGGAGCGGGGTCTTCGTGT
AGCTGTTCACTGTGGACAGCCTCTTGAACAATATGCCGTCCTTGCCCATG
GCGTAGAGGATGCGAGGCAGTGGGAACATGGCGCCCACAAACTAGTGCAG
AGCG
BS08715.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11128-PA | 1815 | slif-RA | 995..1815 | 837..17 | 4105 | 100 | Minus |
| CG11128-PC | 1815 | slif-RC | 995..1815 | 837..17 | 4105 | 100 | Minus |
| CG11128-PB | 1815 | slif-RB | 995..1815 | 837..17 | 4105 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slif-RB | 2523 | CG11128-RB | 1112..1950 | 854..17 | 4170 | 99.9 | Minus |
| slif-RC | 2653 | CG11128-RC | 1242..2080 | 854..17 | 4170 | 99.9 | Minus |
| slif-RA | 2744 | CG11128-RA | 1333..2171 | 854..17 | 4170 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22892563..22893248 | 702..17 | 3430 | 100 | Minus |
| 3L | 28110227 | 3L | 22892343..22892495 | 854..703 | 715 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:17:10 has no hits.
BS08715.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:10 Download gff for
BS08715.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-PB | 977..1815 | 17..854 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:17 Download gff for
BS08715.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11128-PB | 977..1815 | 17..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:29:14 Download gff for
BS08715.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RA | 1333..2175 | 13..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:45 Download gff for
BS08715.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RA | 1333..2175 | 13..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:45 Download gff for
BS08715.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22892343..22892495 | 703..854 | 99 | -> | Minus |
| 3L | 22892563..22893252 | 13..702 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:29:14 Download gff for
BS08715.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22885443..22885595 | 703..854 | 99 | -> | Minus |
| arm_3L | 22885663..22886352 | 13..702 | 99 | | Minus |
BS08715.5prime Sequence
935 bp (858 high quality bases) assembled on 2006-01-11
> BS08715.5prime
GAAGTTATCAGTCGACATGACCAATCTCTGGAAGGCATTGACGCGTCGCA
AGACGGAGGACGTGAACGAAGGCGAGTCCCAGTTGGCGCGAGTGCTGAAC
CTTTTCGATCTGACGGCTTTGGGAGTGGGCAGTACTTTGGGACTGGGAGT
CTATGTGCTGGCTGGTCAGGTGGCCTTCAATATTGCCGGGCCAGCGGTGA
CCATTTCCTTCCTGATTGCGGCCATCGCGTCTGCCTTCGCGGGGATCTGC
TATGCGGAGTTCGCCGCGCGAGTGCCCAAGGCGGGAAGCGCCTACGTATA
CAGCTACGTGACCATTGGAGAGTTCGTCGCCTTCACCATAGGATGGAATC
TCATTCTGGAGTATGTGATTGGCACAGCCTCAGTTGCGCGCGGCCTGAGC
GGATATTTCGACTCTCTGATCAACAACAACATGTCGAAGGCATTGAATGA
GTCGATGCACATCGACGTCGACTTTCTGGGTGACTACCCCGATTTTTTGT
CCTTCGGCATGGTGCTGCTCCTGGCGGCCATCCTCGCCTTTGGCGCCAAA
GAGTCAAGCTTCCTGAACAACATCTTCACCACAGTCAATCTGGTTACGAT
CGCTATCGTCCTGGTGGCTGGCGCCATGAACGCCAACGTCGACAATTGGC
GCATCCCGAAGAAAGATGTTCCCGAGGGCTTTGGCACGGGAGGCTTCATG
CCGTTCGGCATTGCTGGAGTGATGGCCGGAGCTGCCAAATGCTTCTACGG
CTTCGTGGGGTTCGACTGCATCGCCACCACGGGCGAGGAGGCCATCAACC
CAAAGCGCAACATTCCGCTCTCTATCGTGGTGTCGCTGATCATAATCTTC
CTATCCTACTTTGGAGTGTCCACGGTGCTGACTATGATGCTGCCCTACTA
CAAACAGGACAAGGATGCACCTTTTCCTCACGCTT
BS08715.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11128-PA | 1815 | slif-RA | 1..919 | 17..935 | 4595 | 100 | Plus |
| CG11128-PC | 1815 | slif-RC | 1..919 | 17..935 | 4595 | 100 | Plus |
| CG11128-PB | 1815 | slif-RB | 1..919 | 17..935 | 4595 | 100 | Plus |
| CG5535-PB | 1866 | CG5535-RB | 841..893 | 845..897 | 190 | 94.3 | Plus |
| CG5535-PA | 1902 | CG5535-RA | 877..929 | 845..897 | 190 | 94.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slif-RB | 2523 | CG11128-RB | 135..1054 | 16..935 | 4600 | 100 | Plus |
| slif-RC | 2653 | CG11128-RC | 265..1184 | 16..935 | 4600 | 100 | Plus |
| slif-RA | 2744 | CG11128-RA | 356..1275 | 16..935 | 4600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:37:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22891366..22892285 | 16..935 | 4600 | 100 | Plus |
| 3L | 28110227 | 3L | 17853690..17853847 | 897..740 | 310 | 79.7 | Minus |
| 3L | 28110227 | 3L | 17854354..17854503 | 357..208 | 270 | 78.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:37:16 has no hits.
BS08715.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:11 Download gff for
BS08715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-PB | 1..919 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:19 Download gff for
BS08715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11128-PB | 1..919 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:48:30 Download gff for
BS08715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RA | 354..1275 | 12..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:53:46 Download gff for
BS08715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RA | 354..1275 | 12..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:53:46 Download gff for
BS08715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22891358..22892285 | 5..935 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:48:30 Download gff for
BS08715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22884458..22885385 | 5..935 | 99 | | Plus |
BS08715.complete Sequence
1847 bp assembled on 2010-05-10
GenBank Submission: KX801673
> BS08715.complete
GAAGTTATCAGTCGACATGACCAATCTCTGGAAGGCATTGACGCGTCGCA
AGACGGAGGACGTGAACGAAGGCGAGTCCCAGTTGGCGCGAGTGCTGAAC
CTTTTCGATCTGACGGCTTTGGGAGTGGGCAGTACTTTGGGACTGGGAGT
CTATGTGCTGGCTGGTCAGGTGGCCTTCAATATTGCCGGGCCAGCGGTGA
CCATTTCCTTCCTGATTGCGGCCATCGCGTCTGCCTTCGCGGGGATCTGC
TATGCGGAGTTCGCCGCGCGAGTGCCCAAGGCGGGAAGCGCCTACGTATA
CAGCTACGTGACCATTGGAGAGTTCGTCGCCTTCACCATAGGATGGAATC
TCATTCTGGAGTATGTGATTGGCACAGCCTCAGTTGCGCGCGGCCTGAGC
GGATATTTCGACTCTCTGATCAACAACAACATGTCGAAGGCATTGAATGA
GTCGATGCACATCGACGTCGACTTTCTGGGTGACTACCCCGATTTTTTGT
CCTTCGGCATGGTGCTGCTCCTGGCGGCCATCCTCGCCTTTGGCGCCAAA
GAGTCAAGCTTCCTGAACAACATCTTCACCACAGTCAATCTGGTTACGAT
CGCTATCGTCCTGGTGGCTGGCGCCATGAACGCCAACGTCGACAATTGGC
GCATCCCGAAGAAAGATGTTCCCGAGGGCTTTGGCACGGGAGGCTTCATG
CCGTTCGGCATTGCTGGAGTGATGGCCGGAGCTGCCAAATGCTTCTACGG
CTTCGTGGGGTTCGACTGCATCGCCACCACGGGCGAGGAGGCCATCAACC
CAAAGCGCAACATTCCGCTCTCTATCGTGGTGTCGCTGATCATAATCTTC
CTATCCTACTTTGGAGTGTCCACGGTGCTGACTATGATGCTGCCCTACTA
CAAACAGGACAAGGATGCACCTTTTCCTCACGCTTTCGATTCCGTCGAGT
GGTACACCATCAAGTGGATTGTGACCATAGGTGCTGTGTTTGCGCTCTGC
ACTAGTTTGTTGGGCGCCATGTTCCCACTGCCTCGCATCCTCTACGCCAT
GGGCAAGGACGGCATATTGTTCAAGAGGCTGTCCACAGTGAACAGCTACA
CGAAGACCCCGCTCCTGGCCACCATTGTGTCTGGAATCTTTGCGTCCATA
ATGGCCATGCTCTTTAACCTGGACCAGCTTGTGGACATGATGTCCATCGG
AACCCTGTTAGCATACACCATCGTGGCAATTTGCGTGCTAGTGCTGCGCT
ACCAGGACGAGGAGATGACCAAGCTGGTGTCTGTCAAGGCACCGAATGTT
TTCCGGCAATTCTTCAACGGCAACTCCTTCCGGGAGCCCAATTCTATGAC
CTCGTCCATCACCAAAGTCGGCATTGTGGTGTTCGCCATCTTTTGCCTGG
TCTGGTGCTCCCTCCAGAAAGTCTTCGACCTGGACAGCACCGGCGGAATT
GTGGCGCTCAGCTTGGTGGGCGCTGTGCTAATCCTCATCTGCGTTGTGAT
CGGCATGCAGCCGGTGTCGACCATTGAGCTCACGTTCAAGGTGCCGCTAG
TGCCGTTCGTGCCGTGCCTCAGCGTCTTTGCGAATTTGTACCTGATGTTT
CAGCTGGACCTGAACACATGGATCCGCTTCCTCATCTGGATCGTGATCGG
CTACGTGATTTACTTCTGTTACGGCATGCGGAACTCCACGCAGATAAGTA
GGAGCCGCAGTCACGCCGAGGTGGCGGCAAGCGCTCTGCAGAACCAGGGA
CAGCACGTGAATCCCGGCTTCGAGCCGGACTACAAGGTCGAAAATGGGGG
TCGACCCTACGAGTTCTCCGAGAAGCTGTAAAAGCTTTCTAGACCAT
BS08715.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slif-RB | 1815 | CG11128-PB | 1..1815 | 17..1831 | 9075 | 100 | Plus |
| slif-RC | 1815 | CG11128-PC | 1..1815 | 17..1831 | 9075 | 100 | Plus |
| slif-RA | 1815 | CG11128-PA | 1..1815 | 17..1831 | 9075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slif-RB | 2523 | CG11128-RB | 135..1950 | 16..1831 | 9080 | 100 | Plus |
| slif-RC | 2653 | CG11128-RC | 265..2080 | 16..1831 | 9080 | 100 | Plus |
| slif-RA | 2744 | CG11128-RA | 356..2171 | 16..1831 | 9080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:57:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22891366..22892495 | 16..1145 | 5650 | 100 | Plus |
| 3L | 28110227 | 3L | 22892563..22893248 | 1146..1831 | 3430 | 100 | Plus |
| 3L | 28110227 | 3L | 17853690..17853847 | 897..740 | 310 | 79.7 | Minus |
| 3L | 28110227 | 3L | 17854354..17854503 | 357..208 | 270 | 78.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:57:34 has no hits.
BS08715.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:54 Download gff for
BS08715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RB | 136..1948 | 17..1829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:46 Download gff for
BS08715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RA | 357..2169 | 17..1829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:18 Download gff for
BS08715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RA | 357..2169 | 17..1829 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:18 Download gff for
BS08715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22891367..22892495 | 17..1145 | 100 | -> | Plus |
| 3L | 22892563..22893246 | 1146..1829 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:46 Download gff for
BS08715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22884467..22885595 | 17..1145 | 100 | -> | Plus |
| arm_3L | 22885663..22886346 | 1146..1829 | 100 | | Plus |
BS08715.pep Sequence
Translation from 16 to 1830
> BS08715.pep
MTNLWKALTRRKTEDVNEGESQLARVLNLFDLTALGVGSTLGLGVYVLAG
QVAFNIAGPAVTISFLIAAIASAFAGICYAEFAARVPKAGSAYVYSYVTI
GEFVAFTIGWNLILEYVIGTASVARGLSGYFDSLINNNMSKALNESMHID
VDFLGDYPDFLSFGMVLLLAAILAFGAKESSFLNNIFTTVNLVTIAIVLV
AGAMNANVDNWRIPKKDVPEGFGTGGFMPFGIAGVMAGAAKCFYGFVGFD
CIATTGEEAINPKRNIPLSIVVSLIIIFLSYFGVSTVLTMMLPYYKQDKD
APFPHAFDSVEWYTIKWIVTIGAVFALCTSLLGAMFPLPRILYAMGKDGI
LFKRLSTVNSYTKTPLLATIVSGIFASIMAMLFNLDQLVDMMSIGTLLAY
TIVAICVLVLRYQDEEMTKLVSVKAPNVFRQFFNGNSFREPNSMTSSITK
VGIVVFAIFCLVWCSLQKVFDLDSTGGIVALSLVGAVLILICVVIGMQPV
STIELTFKVPLVPFVPCLSVFANLYLMFQLDLNTWIRFLIWIVIGYVIYF
CYGMRNSTQISRSRSHAEVAASALQNQGQHVNPGFEPDYKVENGGRPYEF
SEKL*
BS08715.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slif-PB | 604 | CG11128-PB | 1..604 | 1..604 | 3085 | 100 | Plus |
| slif-PC | 604 | CG11128-PC | 1..604 | 1..604 | 3085 | 100 | Plus |
| slif-PA | 604 | CG11128-PA | 1..604 | 1..604 | 3085 | 100 | Plus |
| CG5535-PB | 621 | CG5535-PB | 6..589 | 1..570 | 1580 | 52.4 | Plus |
| CG5535-PC | 630 | CG5535-PC | 15..598 | 1..570 | 1580 | 52.4 | Plus |
