Clone Sequence Records
BS08716.3prime Sequence
804 bp (773 high quality bases) assembled on 2006-01-11
> BS08716.3prime
ATGGTCTAGAAAGCTTTTATTGTCGGTTGTTCACCCCCTCGGGATTGTGG
CTGCTGACCATGCTGTGCTCCATGTTCTTCACGATCACATAGTTGGTGAT
GTGGTTGATGGCCTCGTCCTGCAGCCGCTCCGGCCAGCGCTTCATGTACG
ATTTGATGAAGTCGCCGAACGTGTCCACCTTATCGGGAGTGCTCTTGTGC
GTGTCCACGATGTTCTTCACAATGTCCACGAACTTGTCGTAGTCCTCGTG
CGACTTCTTGATCTTCTGGTAGTTGGCCACGCCTCCATTGGTGTTGCCCC
CACCACCACCACTGCCACCGCTTCCACCGGCAGCCGTGTTCATTTGCTGA
TCCATGTTGTTATCCGCCAGGCGGGCTGAGGCAGCGGCAGCCACCGCCGC
CACGGCCGCCGATGAGGCCATGAAGTTGTCCACGCTGCCGGCATTGGGTG
GTGGCTGGGAGTGGTCCATAAAGTGCCGATGCATCCCGTACTCGGTCTTA
TAGAACCCCTCCGTGTTGTTACTATTAAACTCTTGCTGAGACATTGGATT
CTTCCAAACTGGTGACTCGGATGTGGATGGTAAGCTGCTCGTATTGGACG
CACTTGTCATGCGTTTGTCTTTGTAACCGGTGTGTGCGGCCAGACTCTTA
AACACATCATCCACTTGACTGTAGAACTTCCAGGTGCTGATGATGCCTGT
GGTCTCAAAGGTCTTCTGCTCCTGCCGGTAGCGCTGCGTTAGATTGTTGA
CTTTAAAGTGAACCTCGAGTGCGGTAACAGGGACGCCCAGCGAGGTTAGC
TGCT
BS08716.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18766-PB | 927 | CG18766-RB | 140..927 | 804..17 | 3940 | 100 | Minus |
CG18766-PA | 927 | CG18766-RA | 140..927 | 804..17 | 3940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18766-RC | 1591 | CG18766-RC | 429..1216 | 804..17 | 3940 | 100 | Minus |
CG18766-RA | 1651 | CG18766-RA | 489..1276 | 804..17 | 3940 | 100 | Minus |
CG18766-RB | 1478 | CG18766-RB | 316..1103 | 804..17 | 3940 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27242710..27243190 | 17..497 | 2405 | 100 | Plus |
3R | 32079331 | 3R | 27243447..27243630 | 621..804 | 920 | 100 | Plus |
3R | 32079331 | 3R | 27243252..27243375 | 497..620 | 620 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 09:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 664..715 | 284..336 | 127 | 73.6 | Plus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 682..719 | 293..330 | 118 | 78.9 | Plus |
BS08716.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:12 Download gff for
BS08716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18766-PA | 140..927 | 17..804 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:20 Download gff for
BS08716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18766-PA | 140..927 | 17..804 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:43:34 Download gff for
BS08716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18766-RB | 316..1103 | 17..804 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:57:44 Download gff for
BS08716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18766-RB | 316..1103 | 17..804 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:57:44 Download gff for
BS08716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27242710..27243190 | 17..497 | 100 | <- | Plus |
3R | 27243253..27243375 | 498..620 | 100 | <- | Plus |
3R | 27243447..27243630 | 621..804 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:43:34 Download gff for
BS08716.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23068432..23068912 | 17..497 | 100 | <- | Plus |
arm_3R | 23068975..23069097 | 498..620 | 100 | <- | Plus |
arm_3R | 23069169..23069352 | 621..804 | 100 | | Plus |
BS08716.5prime Sequence
860 bp (808 high quality bases) assembled on 2006-01-11
> BS08716.5prime
GAAGTTATCAGTCGACATGCCTTATGAAAAATTCAACAAAAAGCGCCGAC
AATGGGAGGATAGTGGTGTTCTAGAGCTGATCAAACTATGGAAAGTCTGC
GCCTATGAGCTGCGCACCATTAAACGCAATGGCCATCTGTATGTGGCAAT
GGCCAAGCAGCTAACCTCGCTGGGCGTCCCTGTTACCGCACTCGAGGTTC
ACTTTAAAGTCAACAATCTAACGCAGCGCTACCGGCAGGAGCAGAAGACC
TTTGAGACCACAGGCATCATCAGCACCTGGAAGTTCTACAGTCAAGTGGA
TGATGTGTTTAAGAGTCTGGCCGCACACACCGGTTACAAAGACAAACGCA
TGACAAGTGCGTCCAATACGAGCAGCTTACCATCCACATCCGAGTCACCA
GTTTGGAAGAATCCAATGTCTCAGCAAGAGTTTAATAGTAACAACACGGA
GGGGTTCTATAAGACCGAGTACGGGATGCATCGGCACTTTATGGACCACT
CCCAGCCACCACCCAATGCCGGCAGCGTGGACAACTTCATGGCCTCATCG
GCGGCCGTGGCGGCGGTGGCTGCCGCTGCCTCAGCCCGCCTGGCGGATAA
CAACATGGATCAGCAAATGAACACGGCTGCCGGTGGAAGCGGTGGCAGTG
GTGGTGGTGGGGGCAACACCAATGGAGGCGTGGCCAACTACCAGAAGATC
AAGAAGTCGCACGAGGACTACGACAAGTTCGTGGACATTGTGAAGAACAT
CGTGGACACGCACAAGAGCACTCCCGATAAGGTGGACACGTTCGGCGACT
TCATCAAATCGTACATGAAGCGCTGGCCGGAGCGGCTGCAGGACGAGGCC
ATCAACCACA
BS08716.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18766-PB | 927 | CG18766-RB | 1..844 | 17..860 | 4220 | 100 | Plus |
CG18766-PA | 927 | CG18766-RA | 1..844 | 17..860 | 4220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18766-RC | 1591 | CG18766-RC | 290..1133 | 17..860 | 4220 | 100 | Plus |
CG18766-RA | 1651 | CG18766-RA | 350..1193 | 17..860 | 4220 | 100 | Plus |
CG18766-RB | 1478 | CG18766-RB | 177..1020 | 17..860 | 4220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27242793..27243190 | 860..463 | 1990 | 100 | Minus |
3R | 32079331 | 3R | 27243447..27243763 | 339..23 | 1585 | 100 | Minus |
3R | 32079331 | 3R | 27243252..27243375 | 463..340 | 620 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:35:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 664..715 | 676..624 | 127 | 73.6 | Minus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 682..719 | 667..630 | 118 | 78.9 | Minus |
BS08716.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:13 Download gff for
BS08716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18766-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:21 Download gff for
BS08716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18766-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:15:38 Download gff for
BS08716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18766-RB | 172..1019 | 11..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:35 Download gff for
BS08716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18766-RB | 172..1019 | 11..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:35 Download gff for
BS08716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27242794..27243190 | 463..859 | 100 | <- | Minus |
3R | 27243253..27243375 | 340..462 | 100 | <- | Minus |
3R | 27243447..27243767 | 19..339 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:15:38 Download gff for
BS08716.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23068516..23068912 | 463..859 | 100 | <- | Minus |
arm_3R | 23068975..23069097 | 340..462 | 100 | <- | Minus |
arm_3R | 23069169..23069489 | 19..339 | 99 | | Minus |
BS08716.complete Sequence
959 bp (959 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636245
> BS08716.complete
GAAGTTATCAGTCGACATGCCTTATGAAAAATTCAACAAAAAGCGCCGAC
AATGGGAGGATAGTGGTGTTCTAGAGCTGATCAAACTATGGAAAGTCTGC
GCCTATGAGCTGCGCACCATTAAACGCAATGGCCATCTGTATGTGGCAAT
GGCCAAGCAGCTAACCTCGCTGGGCGTCCCTGTTACCGCACTCGAGGTTC
ACTTTAAAGTCAACAATCTAACGCAGCGCTACCGGCAGGAGCAGAAGACC
TTTGAGACCACAGGCATCATCAGCACCTGGAAGTTCTACAGTCAAGTGGA
TGATGTGTTTAAGAGTCTGGCCGCACACACCGGTTACAAAGACAAACGCA
TGACAAGTGCGTCCAATACGAGCAGCTTACCATCCACATCCGAGTCACCA
GTTTGGAAGAATCCAATGTCTCAGCAAGAGTTTAATAGTAACAACACGGA
GGGGTTCTATAAGACCGAGTACGGGATGCATCGGCACTTTATGGACCACT
CCCAGCCACCACCCAATGCCGGCAGCGTGGACAACTTCATGGCCTCATCG
GCGGCCGTGGCGGCGGTGGCTGCCGCTGCCTCAGCCCGCCTGGCGGATAA
CAACATGGATCAGCAAATGAACACGGCTGCCGGTGGAAGCGGTGGCAGTG
GTGGTGGTGGGGGCAACACCAATGGAGGCGTGGCCAACTACCAGAAGATC
AAGAAGTCGCACGAGGACTACGACAAGTTCGTGGACATTGTGAAGAACAT
CGTGGACACGCACAAGAGCACTCCCGATAAGGTGGACACGTTCGGCGACT
TCATCAAATCGTACATGAAGCGCTGGCCGGAGCGGCTGCAGGACGAGGCC
ATCAACCACATCACCAACTATGTGATCGTGAAGAACATGGAGCACAGCAT
GGTCAGCAGCCACAATCCCGAGGGGGTGAACAACCGACAATAAAAGCTTT
CTAGACCAT
BS08716.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18766-RC | 927 | CG18766-PC | 1..927 | 17..943 | 4635 | 100 | Plus |
CG18766-RA | 927 | CG18766-PA | 1..927 | 17..943 | 4635 | 100 | Plus |
CG18766-RB | 927 | CG18766-PB | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18766-RC | 1591 | CG18766-RC | 290..1216 | 17..943 | 4635 | 100 | Plus |
CG18766-RA | 1651 | CG18766-RA | 350..1276 | 17..943 | 4635 | 100 | Plus |
CG18766-RB | 1478 | CG18766-RB | 177..1103 | 17..943 | 4635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27242710..27243190 | 943..463 | 2405 | 100 | Minus |
3R | 32079331 | 3R | 27243447..27243763 | 339..23 | 1585 | 100 | Minus |
3R | 32079331 | 3R | 27243252..27243375 | 463..340 | 620 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 664..715 | 676..624 | 127 | 73.6 | Minus |
R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 682..719 | 667..630 | 118 | 78.9 | Minus |
BS08716.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:55 Download gff for
BS08716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18766-RA | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:29 Download gff for
BS08716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18766-RA | 331..1262 | 11..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:35 Download gff for
BS08716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18766-RB | 177..1101 | 17..941 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:55 Download gff for
BS08716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18766-RA | 331..1262 | 11..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:25 Download gff for
BS08716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18766-RB | 177..1101 | 17..941 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:25 Download gff for
BS08716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27243253..27243375 | 340..462 | 100 | <- | Minus |
3R | 27243447..27243765 | 17..339 | 98 | | Minus |
3R | 27242712..27243190 | 463..941 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:35 Download gff for
BS08716.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23068434..23068912 | 463..941 | 100 | <- | Minus |
arm_3R | 23068975..23069097 | 340..462 | 100 | <- | Minus |
arm_3R | 23069169..23069487 | 17..339 | 98 | | Minus |
BS08716.pep Sequence
Translation from 16 to 942
> BS08716.pep
MPYEKFNKKRRQWEDSGVLELIKLWKVCAYELRTIKRNGHLYVAMAKQLT
SLGVPVTALEVHFKVNNLTQRYRQEQKTFETTGIISTWKFYSQVDDVFKS
LAAHTGYKDKRMTSASNTSSLPSTSESPVWKNPMSQQEFNSNNTEGFYKT
EYGMHRHFMDHSQPPPNAGSVDNFMASSAAVAAVAAAASARLADNNMDQQ
MNTAAGGSGGSGGGGGNTNGGVANYQKIKKSHEDYDKFVDIVKNIVDTHK
STPDKVDTFGDFIKSYMKRWPERLQDEAINHITNYVIVKNMEHSMVSSHN
PEGVNNRQ*
BS08716.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18766-PC | 308 | CG18766-PC | 1..308 | 1..308 | 1630 | 100 | Plus |
CG18766-PA | 308 | CG18766-PA | 1..308 | 1..308 | 1630 | 100 | Plus |
CG18766-PB | 308 | CG18766-PB | 1..308 | 1..308 | 1630 | 100 | Plus |