Clone BS08716 Report

Search the DGRC for BS08716

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG18766-RA
Protein status:BS08716.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08716.3prime Sequence

804 bp (773 high quality bases) assembled on 2006-01-11

> BS08716.3prime
ATGGTCTAGAAAGCTTTTATTGTCGGTTGTTCACCCCCTCGGGATTGTGG
CTGCTGACCATGCTGTGCTCCATGTTCTTCACGATCACATAGTTGGTGAT
GTGGTTGATGGCCTCGTCCTGCAGCCGCTCCGGCCAGCGCTTCATGTACG
ATTTGATGAAGTCGCCGAACGTGTCCACCTTATCGGGAGTGCTCTTGTGC
GTGTCCACGATGTTCTTCACAATGTCCACGAACTTGTCGTAGTCCTCGTG
CGACTTCTTGATCTTCTGGTAGTTGGCCACGCCTCCATTGGTGTTGCCCC
CACCACCACCACTGCCACCGCTTCCACCGGCAGCCGTGTTCATTTGCTGA
TCCATGTTGTTATCCGCCAGGCGGGCTGAGGCAGCGGCAGCCACCGCCGC
CACGGCCGCCGATGAGGCCATGAAGTTGTCCACGCTGCCGGCATTGGGTG
GTGGCTGGGAGTGGTCCATAAAGTGCCGATGCATCCCGTACTCGGTCTTA
TAGAACCCCTCCGTGTTGTTACTATTAAACTCTTGCTGAGACATTGGATT
CTTCCAAACTGGTGACTCGGATGTGGATGGTAAGCTGCTCGTATTGGACG
CACTTGTCATGCGTTTGTCTTTGTAACCGGTGTGTGCGGCCAGACTCTTA
AACACATCATCCACTTGACTGTAGAACTTCCAGGTGCTGATGATGCCTGT
GGTCTCAAAGGTCTTCTGCTCCTGCCGGTAGCGCTGCGTTAGATTGTTGA
CTTTAAAGTGAACCTCGAGTGCGGTAACAGGGACGCCCAGCGAGGTTAGC
TGCT

BS08716.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG18766-PB 927 CG18766-RB 140..927 804..17 3940 100 Minus
CG18766-PA 927 CG18766-RA 140..927 804..17 3940 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG18766-RC 1591 CG18766-RC 429..1216 804..17 3940 100 Minus
CG18766-RA 1651 CG18766-RA 489..1276 804..17 3940 100 Minus
CG18766-RB 1478 CG18766-RB 316..1103 804..17 3940 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27242710..27243190 17..497 2405 100 Plus
3R 32079331 3R 27243447..27243630 621..804 920 100 Plus
3R 32079331 3R 27243252..27243375 497..620 620 100 Plus
Blast to na_te.dros performed 2015-02-03 09:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 664..715 284..336 127 73.6 Plus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 682..719 293..330 118 78.9 Plus

BS08716.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:12 Download gff for BS08716.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18766-PA 140..927 17..804 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:20 Download gff for BS08716.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18766-PA 140..927 17..804 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:43:34 Download gff for BS08716.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18766-RB 316..1103 17..804 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:57:44 Download gff for BS08716.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18766-RB 316..1103 17..804 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:57:44 Download gff for BS08716.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27242710..27243190 17..497 100 <- Plus
3R 27243253..27243375 498..620 100 <- Plus
3R 27243447..27243630 621..804 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:43:34 Download gff for BS08716.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23068432..23068912 17..497 100 <- Plus
arm_3R 23068975..23069097 498..620 100 <- Plus
arm_3R 23069169..23069352 621..804 100   Plus

BS08716.5prime Sequence

860 bp (808 high quality bases) assembled on 2006-01-11

> BS08716.5prime
GAAGTTATCAGTCGACATGCCTTATGAAAAATTCAACAAAAAGCGCCGAC
AATGGGAGGATAGTGGTGTTCTAGAGCTGATCAAACTATGGAAAGTCTGC
GCCTATGAGCTGCGCACCATTAAACGCAATGGCCATCTGTATGTGGCAAT
GGCCAAGCAGCTAACCTCGCTGGGCGTCCCTGTTACCGCACTCGAGGTTC
ACTTTAAAGTCAACAATCTAACGCAGCGCTACCGGCAGGAGCAGAAGACC
TTTGAGACCACAGGCATCATCAGCACCTGGAAGTTCTACAGTCAAGTGGA
TGATGTGTTTAAGAGTCTGGCCGCACACACCGGTTACAAAGACAAACGCA
TGACAAGTGCGTCCAATACGAGCAGCTTACCATCCACATCCGAGTCACCA
GTTTGGAAGAATCCAATGTCTCAGCAAGAGTTTAATAGTAACAACACGGA
GGGGTTCTATAAGACCGAGTACGGGATGCATCGGCACTTTATGGACCACT
CCCAGCCACCACCCAATGCCGGCAGCGTGGACAACTTCATGGCCTCATCG
GCGGCCGTGGCGGCGGTGGCTGCCGCTGCCTCAGCCCGCCTGGCGGATAA
CAACATGGATCAGCAAATGAACACGGCTGCCGGTGGAAGCGGTGGCAGTG
GTGGTGGTGGGGGCAACACCAATGGAGGCGTGGCCAACTACCAGAAGATC
AAGAAGTCGCACGAGGACTACGACAAGTTCGTGGACATTGTGAAGAACAT
CGTGGACACGCACAAGAGCACTCCCGATAAGGTGGACACGTTCGGCGACT
TCATCAAATCGTACATGAAGCGCTGGCCGGAGCGGCTGCAGGACGAGGCC
ATCAACCACA

BS08716.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG18766-PB 927 CG18766-RB 1..844 17..860 4220 100 Plus
CG18766-PA 927 CG18766-RA 1..844 17..860 4220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18766-RC 1591 CG18766-RC 290..1133 17..860 4220 100 Plus
CG18766-RA 1651 CG18766-RA 350..1193 17..860 4220 100 Plus
CG18766-RB 1478 CG18766-RB 177..1020 17..860 4220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27242793..27243190 860..463 1990 100 Minus
3R 32079331 3R 27243447..27243763 339..23 1585 100 Minus
3R 32079331 3R 27243252..27243375 463..340 620 100 Minus
Blast to na_te.dros performed 2015-02-11 17:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 664..715 676..624 127 73.6 Minus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 682..719 667..630 118 78.9 Minus

BS08716.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:13 Download gff for BS08716.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18766-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:21 Download gff for BS08716.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18766-PA 1..843 17..859 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:15:38 Download gff for BS08716.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18766-RB 172..1019 11..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:35 Download gff for BS08716.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18766-RB 172..1019 11..859 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:35 Download gff for BS08716.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27242794..27243190 463..859 100 <- Minus
3R 27243253..27243375 340..462 100 <- Minus
3R 27243447..27243767 19..339 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:15:38 Download gff for BS08716.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23068516..23068912 463..859 100 <- Minus
arm_3R 23068975..23069097 340..462 100 <- Minus
arm_3R 23069169..23069489 19..339 99   Minus

BS08716.complete Sequence

959 bp (959 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636245

> BS08716.complete
GAAGTTATCAGTCGACATGCCTTATGAAAAATTCAACAAAAAGCGCCGAC
AATGGGAGGATAGTGGTGTTCTAGAGCTGATCAAACTATGGAAAGTCTGC
GCCTATGAGCTGCGCACCATTAAACGCAATGGCCATCTGTATGTGGCAAT
GGCCAAGCAGCTAACCTCGCTGGGCGTCCCTGTTACCGCACTCGAGGTTC
ACTTTAAAGTCAACAATCTAACGCAGCGCTACCGGCAGGAGCAGAAGACC
TTTGAGACCACAGGCATCATCAGCACCTGGAAGTTCTACAGTCAAGTGGA
TGATGTGTTTAAGAGTCTGGCCGCACACACCGGTTACAAAGACAAACGCA
TGACAAGTGCGTCCAATACGAGCAGCTTACCATCCACATCCGAGTCACCA
GTTTGGAAGAATCCAATGTCTCAGCAAGAGTTTAATAGTAACAACACGGA
GGGGTTCTATAAGACCGAGTACGGGATGCATCGGCACTTTATGGACCACT
CCCAGCCACCACCCAATGCCGGCAGCGTGGACAACTTCATGGCCTCATCG
GCGGCCGTGGCGGCGGTGGCTGCCGCTGCCTCAGCCCGCCTGGCGGATAA
CAACATGGATCAGCAAATGAACACGGCTGCCGGTGGAAGCGGTGGCAGTG
GTGGTGGTGGGGGCAACACCAATGGAGGCGTGGCCAACTACCAGAAGATC
AAGAAGTCGCACGAGGACTACGACAAGTTCGTGGACATTGTGAAGAACAT
CGTGGACACGCACAAGAGCACTCCCGATAAGGTGGACACGTTCGGCGACT
TCATCAAATCGTACATGAAGCGCTGGCCGGAGCGGCTGCAGGACGAGGCC
ATCAACCACATCACCAACTATGTGATCGTGAAGAACATGGAGCACAGCAT
GGTCAGCAGCCACAATCCCGAGGGGGTGAACAACCGACAATAAAAGCTTT
CTAGACCAT

BS08716.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG18766-RC 927 CG18766-PC 1..927 17..943 4635 100 Plus
CG18766-RA 927 CG18766-PA 1..927 17..943 4635 100 Plus
CG18766-RB 927 CG18766-PB 1..927 17..943 4635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG18766-RC 1591 CG18766-RC 290..1216 17..943 4635 100 Plus
CG18766-RA 1651 CG18766-RA 350..1276 17..943 4635 100 Plus
CG18766-RB 1478 CG18766-RB 177..1103 17..943 4635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27242710..27243190 943..463 2405 100 Minus
3R 32079331 3R 27243447..27243763 339..23 1585 100 Minus
3R 32079331 3R 27243252..27243375 463..340 620 100 Minus
Blast to na_te.dros performed 2014-11-28 00:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 664..715 676..624 127 73.6 Minus
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 682..719 667..630 118 78.9 Minus

BS08716.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:55 Download gff for BS08716.complete
Subject Subject Range Query Range Percent Splice Strand
CG18766-RA 1..927 17..943 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:29 Download gff for BS08716.complete
Subject Subject Range Query Range Percent Splice Strand
CG18766-RA 331..1262 11..943 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:20:35 Download gff for BS08716.complete
Subject Subject Range Query Range Percent Splice Strand
CG18766-RB 177..1101 17..941 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:55 Download gff for BS08716.complete
Subject Subject Range Query Range Percent Splice Strand
CG18766-RA 331..1262 11..943 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:25 Download gff for BS08716.complete
Subject Subject Range Query Range Percent Splice Strand
CG18766-RB 177..1101 17..941 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:25 Download gff for BS08716.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27243253..27243375 340..462 100 <- Minus
3R 27243447..27243765 17..339 98   Minus
3R 27242712..27243190 463..941 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:20:35 Download gff for BS08716.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23068434..23068912 463..941 100 <- Minus
arm_3R 23068975..23069097 340..462 100 <- Minus
arm_3R 23069169..23069487 17..339 98   Minus

BS08716.pep Sequence

Translation from 16 to 942

> BS08716.pep
MPYEKFNKKRRQWEDSGVLELIKLWKVCAYELRTIKRNGHLYVAMAKQLT
SLGVPVTALEVHFKVNNLTQRYRQEQKTFETTGIISTWKFYSQVDDVFKS
LAAHTGYKDKRMTSASNTSSLPSTSESPVWKNPMSQQEFNSNNTEGFYKT
EYGMHRHFMDHSQPPPNAGSVDNFMASSAAVAAVAAAASARLADNNMDQQ
MNTAAGGSGGSGGGGGNTNGGVANYQKIKKSHEDYDKFVDIVKNIVDTHK
STPDKVDTFGDFIKSYMKRWPERLQDEAINHITNYVIVKNMEHSMVSSHN
PEGVNNRQ*

BS08716.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18766-PC 308 CG18766-PC 1..308 1..308 1630 100 Plus
CG18766-PA 308 CG18766-PA 1..308 1..308 1630 100 Plus
CG18766-PB 308 CG18766-PB 1..308 1..308 1630 100 Plus