Clone Sequence Records
BS08720.3prime Sequence
843 bp (814 high quality bases) assembled on 2006-01-11
> BS08720.3prime
ATGGTCTAGAAAGCTTTCATTCATCTGAGGCGCTTCCAGAGCTGGATCCT
GAACCAGAAGGCGAGCCACTGCGAGACCGGCTGGGCGATCGCGACCCAGA
GCCAGATCTGGAGCCCGAACGTGATCGGGAACCGGACTTGGATCTCGACC
TAGAACGCGACCGAGAGCCGGACTTGGAACGGGATCGGGAACGTGATACC
GATCTCGATCTGGATCCGGATTTCTGGGATCCTGCCGGCGAATTTGTGCG
TGATCTGGAGCCGCTACCAGACCGAGAACCAGACTTTGAGCGGCTGCTGG
CCCGAGAGCCGGAGCCAGATCCAGATCCTGAACTGGACCCGCTGCGAGTT
CGACTCCGAGAACGAGACTGTCGATCGCGGGCTACCTGGGCGGGTGAGTC
CGCTCCAGATGCTGCCTGTGCGCCAACAGCTGCGTCCTCGCTCGTCTTCT
CCGTCTCGCCAATGATTTGCATTTGCTCCTCTTCCCTCACTTCTTCCACG
ATCTCCTCCTCCTCGCCAGGAACTTCTAGCTGGCGCTCGCGATAGCGCTG
CATACGATGCTCCATGCTGTCCAATGGACGATGCTTGACAACCAGCTTGG
TGTTGTTGGGTTGCTGGCCAACCTTAACGCGACGCTTGTTAAGGCGCACA
CGGGTTTCTAGCTCGTTGTAGTAGATGCCGTCCTGACGCATCACGAAGAA
GTAGTTTTCTTCGTAGCCCTTGGAAGCTTTGGTCTTCACGTTCCAGTTGT
ACTCTCGAGCGATCTTGTACTCGTACTCCTCCTCCTCCTTGTACAGCTCG
CCATTGATGAAGTCTGTACGGCGTTTCTCCAGCGTCTGCTCTG
BS08720.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2503-PA | 1617 | atms-RA | 791..1617 | 843..17 | 4135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atms-RB | 2040 | CG2503-RB | 1163..1989 | 843..17 | 4135 | 100 | Minus |
| atms-RA | 1769 | CG2503-RA | 892..1718 | 843..17 | 4135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:52:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4776863..4777439 | 593..17 | 2885 | 100 | Minus |
| 3R | 32079331 | 3R | 4776554..4776806 | 843..591 | 1265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:52:47 has no hits.
BS08720.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:14 Download gff for
BS08720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-PA | 791..1617 | 17..843 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:23 Download gff for
BS08720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2503-PA | 791..1617 | 17..843 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:22 Download gff for
BS08720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 892..1720 | 11..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:24 Download gff for
BS08720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 892..1720 | 11..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:24 Download gff for
BS08720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4776554..4776804 | 593..843 | 100 | -> | Minus |
| 3R | 4776864..4777441 | 11..592 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:22 Download gff for
BS08720.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 602276..602526 | 593..843 | 100 | -> | Minus |
| arm_3R | 602586..603163 | 11..592 | 99 | | Minus |
BS08720.5prime Sequence
818 bp (816 high quality bases) assembled on 2006-01-11
> BS08720.5prime
GAAGTTATCAGTCGACATGCCACCCACGATCAACAATTCGGCGGTAAACA
GTGCCGCCGAAAAGCGACCCCAGCGGCAAACGGAGCGCAAATCCGAGATC
ATTTGCCGCGTGAAGTATGGAAACAACCTGCCGGATATACCATTTGATCT
GAAGTTTCTGCAGTACCCCTTCGACAGCCACCGCTTCGTGCAGTACAACC
CAACGTCGCTAGAGCGTAACTTCAAGTATGACGTGCTGACGGAACACGAT
TTGGGTGTCACGGTGGACCTGATTAACCGGGAGCTCTATCAGGCCGACTC
CATGACGCTGCTGGACCCCGCCGATGAAAAACTGCTGGAGGAGGAGACTC
TGACGCCCACAGACTCTGTGCGTTCGCGCCAGCATTCGAGGACGGTGTCA
TGGTTGCGCAAATCCGAGTACATCTCCACCGAGCAGACGCGCTTCCAGCC
CCAGAACCTGGAGAACATCGAGGCCAAGGTCGGTTACAACGTCAAGAAGT
CGCTTCGGGAGGAGACTCTCTACCTGGACCGCGAAGCCCAGATCAAAGCC
ATCGAGAAGACCTTCAGCGACACCAAGAGCGAAATTACCAAGCACTATTC
CAAGCCCAATGTGGTGCCAGTGGAGGTACTGCCTATCTTCCCCGACTTCA
CCAACTGGAAGTTCCCGTGCGCCCAGGTCATATTTGACAGTGATCCCGCT
CCTGCGGGCAAGAACGTGCCCGCCCAGCTGGAGGAGATGTCGCAGGCCAT
GATTCGTGGTGTGATGGACGAGAGCGGCGAACAGTTTGTCGCCTACTTCC
TGCCCACAGAGCAGACGC
BS08720.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2503-PA | 1617 | atms-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atms-RB | 2040 | CG2503-RB | 373..1174 | 17..818 | 4010 | 100 | Plus |
| atms-RA | 1769 | CG2503-RA | 102..903 | 17..818 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4775834..4776565 | 87..818 | 3645 | 99.9 | Plus |
| 3R | 32079331 | 3R | 4775706..4775779 | 17..90 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:49:58 has no hits.
BS08720.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:15 Download gff for
BS08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:24 Download gff for
BS08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2503-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:23:40 Download gff for
BS08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 95..903 | 10..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:03 Download gff for
BS08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 95..903 | 10..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:03 Download gff for
BS08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4775699..4775779 | 10..90 | 96 | -> | Plus |
| 3R | 4775838..4776565 | 91..818 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:23:40 Download gff for
BS08720.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 601421..601501 | 10..90 | 96 | -> | Plus |
| arm_3R | 601560..602287 | 91..818 | 100 | | Plus |
BS08720.complete Sequence
1649 bp (1649 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636246
> BS08720.complete
GAAGTTATCAGTCGACATGCCACCCACGATCAACAATTCGGCGGTAAACA
GTGCCGCCGAAAAGCGACCCCAGCGGCAAACGGAGCGCAAATCCGAGATC
ATTTGCCGCGTGAAGTATGGAAACAACCTGCCGGATATACCATTTGATCT
GAAGTTTCTGCAGTACCCCTTCGACAGCCACCGCTTCGTGCAGTACAACC
CAACGTCGCTAGAGCGTAACTTCAAGTATGACGTGCTGACGGAACACGAT
TTGGGTGTCACGGTGGACCTGATTAACCGGGAGCTCTATCAGGCCGACTC
CATGACGCTGCTGGACCCCGCCGATGAAAAACTGCTGGAGGAGGAGACTC
TGACGCCCACAGACTCTGTGCGTTCGCGCCAGCATTCGAGGACGGTGTCA
TGGTTGCGCAAATCCGAGTACATCTCCACCGAGCAGACGCGCTTCCAGCC
CCAGAACCTGGAGAACATCGAGGCCAAGGTCGGTTACAACGTCAAGAAGT
CGCTTCGGGAGGAGACTCTCTACCTGGACCGCGAAGCCCAGATCAAAGCC
ATCGAGAAGACCTTCAGCGACACCAAGAGCGAAATTACCAAGCACTATTC
CAAGCCCAATGTGGTGCCAGTGGAGGTACTGCCTATCTTCCCCGACTTCA
CCAACTGGAAGTTCCCGTGCGCCCAGGTCATATTTGACAGTGATCCCGCT
CCTGCGGGCAAGAACGTGCCCGCCCAGCTGGAGGAGATGTCGCAGGCCAT
GATTCGTGGTGTGATGGACGAGAGCGGCGAACAGTTTGTCGCCTACTTCC
TGCCCACAGAGCAGACGCTGGAGAAACGCCGTACAGACTTCATCAATGGC
GAGCTGTACAAGGAGGAGGAGGAGTACGAGTACAAGATCGCTCGAGAGTA
CAACTGGAACGTGAAGACCAAAGCTTCCAAGGGCTACGAAGAAAACTACT
TCTTCGTGATGCGTCAGGACGGCATCTACTACAACGAGCTAGAAACCCGT
GTGCGCCTTAACAAGCGTCGCGTTAAGGTTGGCCAGCAACCCAACAACAC
CAAGCTGGTTGTCAAGCATCGTCCATTGGACAGCATGGAGCATCGTATGC
AGCGCTATCGCGAGCGCCAGCTAGAAGTTCCTGGCGAGGAGGAGGAGATC
GTGGAAGAAGTGAGGGAAGAGGAGCAAATGCAAATCATTGGCGAGACGGA
GAAGACGAGCGAGGACGCAGCTGTTGGCGCACAGGCAGCATCTGGAGCGG
ACTCACCCGCCCAGGTAGCCCGCGATCGACAGTCTCGTTCTCGGAGTCGA
ACTCGCAGCGGGTCCAGTTCAGGATCTGGATCTGGCTCCGGCTCTCGGGC
CAGCAGCCGCTCAAAGTCTGGTTCTCGGTCTGGTAGCGGCTCCAGATCAC
GCACAAATTCGCCGGCAGGATCCCAGAAATCCGGATCCAGATCGAGATCG
GTATCACGTTCCCGATCCCGTTCCAAGTCCGGCTCTCGGTCGCGTTCTAG
GTCGAGATCCAAGTCCGGTTCCCGATCACGTTCGGGCTCCAGATCTGGCT
CTGGGTCGCGATCGCCCAGCCGGTCTCGCAGTGGCTCGCCTTCTGGTTCA
GGATCCAGCTCTGGAAGCGCCTCAGATGAATGAAAGCTTTCTAGACCAT
BS08720.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atms-RB | 1617 | CG2503-PB | 1..1617 | 17..1633 | 8085 | 100 | Plus |
| atms-RA | 1617 | CG2503-PA | 1..1617 | 17..1633 | 8085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atms-RB | 2040 | CG2503-RB | 373..1989 | 17..1633 | 8085 | 100 | Plus |
| atms-RA | 1769 | CG2503-RA | 102..1718 | 17..1633 | 8085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:50:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4775834..4776806 | 87..1059 | 4850 | 99.9 | Plus |
| 3R | 32079331 | 3R | 4776863..4777439 | 1057..1633 | 2885 | 100 | Plus |
| 3R | 32079331 | 3R | 4775706..4775779 | 17..90 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:50:24 has no hits.
BS08720.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:43 Download gff for
BS08720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 1..1617 | 17..1633 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:14 Download gff for
BS08720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 99..1724 | 10..1639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:02 Download gff for
BS08720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 102..1717 | 17..1632 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:43 Download gff for
BS08720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 99..1724 | 10..1639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:45 Download gff for
BS08720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| atms-RA | 102..1717 | 17..1632 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:45 Download gff for
BS08720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4775706..4775779 | 17..90 | 100 | -> | Plus |
| 3R | 4775838..4776804 | 91..1057 | 100 | -> | Plus |
| 3R | 4776864..4777438 | 1058..1632 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:02 Download gff for
BS08720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 601428..601501 | 17..90 | 100 | -> | Plus |
| arm_3R | 601560..602526 | 91..1057 | 100 | -> | Plus |
| arm_3R | 602586..603160 | 1058..1632 | 100 | | Plus |
BS08720.pep Sequence
Translation from 16 to 1632
> BS08720.pep
MPPTINNSAVNSAAEKRPQRQTERKSEIICRVKYGNNLPDIPFDLKFLQY
PFDSHRFVQYNPTSLERNFKYDVLTEHDLGVTVDLINRELYQADSMTLLD
PADEKLLEEETLTPTDSVRSRQHSRTVSWLRKSEYISTEQTRFQPQNLEN
IEAKVGYNVKKSLREETLYLDREAQIKAIEKTFSDTKSEITKHYSKPNVV
PVEVLPIFPDFTNWKFPCAQVIFDSDPAPAGKNVPAQLEEMSQAMIRGVM
DESGEQFVAYFLPTEQTLEKRRTDFINGELYKEEEEYEYKIAREYNWNVK
TKASKGYEENYFFVMRQDGIYYNELETRVRLNKRRVKVGQQPNNTKLVVK
HRPLDSMEHRMQRYRERQLEVPGEEEEIVEEVREEEQMQIIGETEKTSED
AAVGAQAASGADSPAQVARDRQSRSRSRTRSGSSSGSGSGSGSRASSRSK
SGSRSGSGSRSRTNSPAGSQKSGSRSRSVSRSRSRSKSGSRSRSRSRSKS
GSRSRSGSRSGSGSRSPSRSRSGSPSGSGSSSGSASDE*
BS08720.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| atms-PB | 538 | CG2503-PB | 1..538 | 1..538 | 2734 | 100 | Plus |
| atms-PA | 538 | CG2503-PA | 1..538 | 1..538 | 2734 | 100 | Plus |
| CG2469-PA | 1150 | CG2469-PA | 927..1143 | 339..536 | 314 | 42.4 | Plus |
| CG2469-PB | 1150 | CG2469-PB | 927..1143 | 339..536 | 314 | 42.4 | Plus |
| CG9915-PC | 820 | CG9915-PC | 312..457 | 407..538 | 216 | 55.4 | Plus |
| CG2469-PA | 1150 | CG2469-PA | 1049..1150 | 407..499 | 178 | 52.3 | Plus |
| CG2469-PB | 1150 | CG2469-PB | 1049..1150 | 407..499 | 178 | 52.3 | Plus |
| CG2469-PA | 1150 | CG2469-PA | 838..1057 | 366..538 | 170 | 32.7 | Plus |
| CG2469-PB | 1150 | CG2469-PB | 838..1057 | 366..538 | 170 | 32.7 | Plus |
