Clone Sequence Records
BS08721.3prime Sequence
900 bp (794 high quality bases) assembled on 2006-01-11
> BS08721.3prime
ATGGTCTAGAAAGCTTCTATACAACTTGCAGTTGAACTTGCTTTTGGGTC
AAACAGCTTGCAGCACTCTCGTAACGAATTAACTTATTCTGATGAGTTGT
GGTATCATTATCGTAATCCGAATTAACAACAAAAACATCGACGACGTTTT
CAATGGTGAACTGCTCATTTTGGAGCGTATTCGTCAATACCAAGGGTGTT
ATTTTCACGAGGCCCAATTTAGATGGACAGACGGACAATGGAAATTCGGC
AGATTCGCCACTTTGTAGAAGATTCAGCATAAAATCAGCACAGCCCGTGT
ATTGACTATCGGGCGAAAACTTGGCAGCCAATCGCACATTCAGTTTCATT
GGATGCTCGGATGTGTTCGTCACGCGACAATTGAACGTGAATATCGTGCC
GATTTTAATGGTGTTCTTCGCATCCAGTACTTCCAGGCGGAGCGTTTTGC
ATTCGAATGGCAATCGCTGTAGCTGACTGGTTTGCAGTCTGCCCTTCTCG
CCCAGATTCGACCTCCAGACGATGTCCAGTTTACCCACATTATTAAATTG
CCGCAGGGTATCTACATTCTTCGCAATATCTCCTTTGGGCTTGATGCAAT
AGAGGAACTGACAACTATTGTTGGGTTGCAGCATATGTTTCACCGTGAAT
ACGGATTCCCCATTTGGCAGCGTGTTCAGTGGTGTGACGGAGTAGTCCTC
GGAGCCATCCAGCTCCACCTTTTCCAGGCAGAAGGGACTGGTGGTCACGT
TTTGGATTTGTGCCTCCAAGTAGATTTCGTCGATTTCCGCATTGTAGAAC
TTGGTTTTCACATCGAGTGGCTTCAGCACTTGGAACTTGAAAAAACTTTC
TCAGCGATTGAGCATAGCCCGCAGGAGTCGAGTAGTTCACTTCGCAGACG
BS08721.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4953-PA | 1317 | CG4953-RA | 490..1317 | 844..17 | 4140 | 100 | Minus |
CG4953-PA | 1317 | CG4953-RA | 435..494 | 900..841 | 300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4953-RA | 1746 | CG4953-RA | 542..1426 | 900..15 | 4405 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10267982..10268428 | 461..15 | 2235 | 100 | Minus |
2L | 23513712 | 2L | 10267427..10267736 | 900..590 | 1505 | 99.7 | Minus |
2L | 23513712 | 2L | 10267797..10267927 | 591..461 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:00:09 has no hits.
BS08721.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:16 Download gff for
BS08721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-PA | 435..1317 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:26 Download gff for
BS08721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-PA | 435..1317 | 17..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:46:57 Download gff for
BS08721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 542..1428 | 11..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:39 Download gff for
BS08721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 542..1428 | 11..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:39 Download gff for
BS08721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10267799..10267927 | 461..589 | 100 | -> | Minus |
2L | 10267427..10267736 | 590..900 | 99 | -> | Minus |
2L | 10267983..10268430 | 11..460 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:46:57 Download gff for
BS08721.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10267427..10267736 | 590..900 | 99 | -> | Minus |
arm_2L | 10267799..10267927 | 461..589 | 100 | -> | Minus |
arm_2L | 10267983..10268430 | 11..460 | 99 | | Minus |
BS08721.5prime Sequence
930 bp (832 high quality bases) assembled on 2006-01-11
> BS08721.5prime
GAAGTTATCAGTCGACATGGAGATGGTTGAACCGGATGCGCACTTGGTGG
CACTCAAAGTTATGCGTTTGATGCGGCCCACTTTGGTGGGCCTTGGACCT
GTGGTAACCTGCGAGCCCACGGATTTGGTCCAGAGATTTAGCAGCTCCCA
GGAGAGCGACGGAATGTCCGGTGCCTGTGCGGAGACCTTGGCGGCCGGCC
AGGTGCTACTGCTGCCGCAGTCCTTCGGCAGCATTTACCTGGGCGAAACA
TTCGCCAGCTACATCTGCGTCCACAATACCACCCCGAATCCGGTGGAATG
CGTCACCGTCAAGGCGGATCTACAGTCGAACACGTCACGCATCAACCTAT
CCATGCACGAGAACGCCAAGTCGCCGGTGGTATTGCCGCCGGGTGGAACC
ATTGACGATGTGATACGATACGAGGTGAAGGAAATCGGAACACACATTCT
CGTCTGCGAAGTGAACTACTCGACTCCTGCGGGCTATGCTCAATCGCTGA
GAAAGTTTTTCAAGTTCCAAGTGCTGAAGCCACTCGATGTGAAAACCAAG
TTCTACAATGCGGAAATCGACGAAATCTACTTGGAGGCACAAATCCAAAA
CGTGACCACCAGTCCCTTCTGCCTGGAAAAGGTGGAGCTGGATGGCTCCG
AGGACTACTCCGTCACACCACTGAACACGCTGCCAAATGGGGAATCCGTA
TTCACGGTGAAACATATGCTGCAACCCAACAATAGTTGTCAGTTCCTCTA
TTGCATCAAGCCCAAAGGAGATATTGCGAAGAATGTAGATACCCTGCGGC
AATTTAATAATGTGGGTAAACTGGACATCGTCTGGAGGTCGAATCTGGGC
GAGAAGGGCAGACTGCAAACCAGTCAGCTACAGCGATTGCCATTCGAAAT
GCAAACGCTCCGCCTGGAAGTACTGGATGC
BS08721.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4953-PA | 1317 | CG4953-RA | 1..882 | 17..898 | 4410 | 100 | Plus |
CG4953-PA | 1317 | CG4953-RA | 887..914 | 903..930 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4953-RA | 1746 | CG4953-RA | 106..1021 | 15..930 | 4535 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:37:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10266911..10267300 | 58..447 | 1950 | 100 | Plus |
2L | 23513712 | 2L | 10267424..10267736 | 448..760 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 10267797..10267927 | 759..889 | 655 | 100 | Plus |
2L | 23513712 | 2L | 10266808..10266852 | 15..59 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:37:28 has no hits.
BS08721.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:17 Download gff for
BS08721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-PA | 1..914 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:28 Download gff for
BS08721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-PA | 1..914 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:58:48 Download gff for
BS08721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 106..1021 | 15..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:55 Download gff for
BS08721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 106..1021 | 15..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:55 Download gff for
BS08721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10267799..10267927 | 761..889 | 100 | -> | Plus |
2L | 10267983..10268023 | 890..930 | 95 | | Plus |
2L | 10266913..10267300 | 60..447 | 100 | -> | Plus |
2L | 10266808..10266852 | 15..59 | 100 | -> | Plus |
2L | 10267424..10267736 | 448..760 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:58:48 Download gff for
BS08721.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10266808..10266852 | 15..59 | 100 | -> | Plus |
arm_2L | 10266913..10267300 | 60..447 | 100 | -> | Plus |
arm_2L | 10267424..10267736 | 448..760 | 100 | -> | Plus |
arm_2L | 10267799..10267927 | 761..889 | 100 | -> | Plus |
arm_2L | 10267983..10268023 | 890..930 | 95 | | Plus |
BS08721.complete Sequence
1349 bp (1349 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636247
> BS08721.complete
GAAGTTATCAGTCGACATGGAGATGGTTGAACCGGATGCGCACTTGGTGG
CACTCAAAGTTATGCGTTTGATGCGGCCCACTTTGGTGGGCCTTGGACCT
GTGGTAACCTGCGAGCCCACGGATTTGGTCCAGAGATTTAGCAGCTCCCA
GGAGAGCGACGGAATGTCCGGTGCCTGTGCGGAGACCTTGGCGGCCGGCC
AGGTGCTACTGCTGCCGCAGTCCTTCGGCAGCATTTACCTGGGCGAAACA
TTCGCCAGCTACATCTGCGTCCACAATACCACCCCGAATCCGGTGGAATG
CGTCACCGTCAAGGCGGATCTACAGTCGAACACGTCACGCATCAACCTAT
CCATGCACGAGAACGCCAAGTCGCCGGTGGTATTGCCGCCGGGTGGAACC
ATTGACGATGTGATACGATACGAGGTGAAGGAAATCGGAACACACATTCT
CGTCTGCGAAGTGAACTACTCGACTCCTGCGGGCTATGCTCAATCGCTGA
GAAAGTTTTTCAAGTTCCAAGTGCTGAAGCCACTCGATGTGAAAACCAAG
TTCTACAATGCGGAAATCGACGAAATCTACTTGGAGGCACAAATCCAAAA
CGTGACCACCAGTCCCTTCTGCCTGGAAAAGGTGGAGCTGGATGGCTCCG
AGGACTACTCCGTCACACCACTGAACACGCTGCCAAATGGGGAATCCGTA
TTCACGGTGAAACATATGCTGCAACCCAACAATAGTTGTCAGTTCCTCTA
TTGCATCAAGCCCAAAGGAGATATTGCGAAGAATGTAGATACCCTGCGGC
AATTTAATAATGTGGGTAAACTGGACATCGTCTGGAGGTCGAATCTGGGC
GAGAAGGGCAGACTGCAAACCAGTCAGCTACAGCGATTGCCATTCGAATG
CAAAACGCTCCGCCTGGAAGTACTGGATGCGAAGAACACCATTAAAATCG
GCACGATATTCACGTTCAATTGTCGCGTGACGAACACATCCGAGCATCCA
ATGAAACTGAATGTGCGATTGGCTGCCAAGTTTTCGCCCGATAGTCAATA
CACGGGCTGTGCTGATTTTATGCTGAATCTTCTACAAAGTGGCGAATCTG
CCGAATTTCCATTGTCCGTCTGTCCATCTAAATTGGGCCTCGTGAAAATA
ACACCCTTGGTATTGACGAATACGCTCCAAAATGAGCAGTTCACCATTGA
AAACGTCGTCGATGTTTTTGTTGTTAATTCGGATTACGATAATGATACCA
CAACTCATCAGAATAAGTTAATTCGTTACGAGAGTGCTGCAAGCTGTTTG
ACCCAAAAGCAAGTTCAACTGCAAGTTGTATAGAAGCTTTCTAGACCAT
BS08721.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4953-RA | 1317 | CG4953-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4953-RA | 1746 | CG4953-RA | 106..1426 | 15..1335 | 6605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:58:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10267982..10268428 | 889..1335 | 2235 | 100 | Plus |
2L | 23513712 | 2L | 10266911..10267300 | 58..447 | 1950 | 100 | Plus |
2L | 23513712 | 2L | 10267424..10267736 | 448..760 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 10267797..10267927 | 759..889 | 655 | 100 | Plus |
2L | 23513712 | 2L | 10266808..10266852 | 15..59 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:58:03 has no hits.
BS08721.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:44 Download gff for
BS08721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 1..1317 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:16 Download gff for
BS08721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 107..1429 | 15..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:28 Download gff for
BS08721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 108..1424 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:44 Download gff for
BS08721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 107..1429 | 15..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:42 Download gff for
BS08721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4953-RA | 108..1424 | 17..1333 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:42 Download gff for
BS08721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10266810..10266852 | 17..59 | 100 | -> | Plus |
2L | 10266913..10267300 | 60..447 | 100 | -> | Plus |
2L | 10267424..10267736 | 448..760 | 100 | -> | Plus |
2L | 10267799..10267927 | 761..889 | 100 | -> | Plus |
2L | 10267983..10268426 | 890..1333 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:28 Download gff for
BS08721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10267799..10267927 | 761..889 | 100 | -> | Plus |
arm_2L | 10266810..10266852 | 17..59 | 100 | -> | Plus |
arm_2L | 10266913..10267300 | 60..447 | 100 | -> | Plus |
arm_2L | 10267424..10267736 | 448..760 | 100 | -> | Plus |
arm_2L | 10267983..10268426 | 890..1333 | 100 | | Plus |
BS08721.pep Sequence
Translation from 16 to 1332
> BS08721.pep
MEMVEPDAHLVALKVMRLMRPTLVGLGPVVTCEPTDLVQRFSSSQESDGM
SGACAETLAAGQVLLLPQSFGSIYLGETFASYICVHNTTPNPVECVTVKA
DLQSNTSRINLSMHENAKSPVVLPPGGTIDDVIRYEVKEIGTHILVCEVN
YSTPAGYAQSLRKFFKFQVLKPLDVKTKFYNAEIDEIYLEAQIQNVTTSP
FCLEKVELDGSEDYSVTPLNTLPNGESVFTVKHMLQPNNSCQFLYCIKPK
GDIAKNVDTLRQFNNVGKLDIVWRSNLGEKGRLQTSQLQRLPFECKTLRL
EVLDAKNTIKIGTIFTFNCRVTNTSEHPMKLNVRLAAKFSPDSQYTGCAD
FMLNLLQSGESAEFPLSVCPSKLGLVKITPLVLTNTLQNEQFTIENVVDV
FVVNSDYDNDTTTHQNKLIRYESAASCLTQKQVQLQVV*
BS08721.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4953-PA | 438 | CG4953-PA | 1..438 | 1..438 | 2265 | 100 | Plus |