Clone BS08721 Report

Search the DGRC for BS08721

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG4953-RA
Protein status:BS08721.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08721.3prime Sequence

900 bp (794 high quality bases) assembled on 2006-01-11

> BS08721.3prime
ATGGTCTAGAAAGCTTCTATACAACTTGCAGTTGAACTTGCTTTTGGGTC
AAACAGCTTGCAGCACTCTCGTAACGAATTAACTTATTCTGATGAGTTGT
GGTATCATTATCGTAATCCGAATTAACAACAAAAACATCGACGACGTTTT
CAATGGTGAACTGCTCATTTTGGAGCGTATTCGTCAATACCAAGGGTGTT
ATTTTCACGAGGCCCAATTTAGATGGACAGACGGACAATGGAAATTCGGC
AGATTCGCCACTTTGTAGAAGATTCAGCATAAAATCAGCACAGCCCGTGT
ATTGACTATCGGGCGAAAACTTGGCAGCCAATCGCACATTCAGTTTCATT
GGATGCTCGGATGTGTTCGTCACGCGACAATTGAACGTGAATATCGTGCC
GATTTTAATGGTGTTCTTCGCATCCAGTACTTCCAGGCGGAGCGTTTTGC
ATTCGAATGGCAATCGCTGTAGCTGACTGGTTTGCAGTCTGCCCTTCTCG
CCCAGATTCGACCTCCAGACGATGTCCAGTTTACCCACATTATTAAATTG
CCGCAGGGTATCTACATTCTTCGCAATATCTCCTTTGGGCTTGATGCAAT
AGAGGAACTGACAACTATTGTTGGGTTGCAGCATATGTTTCACCGTGAAT
ACGGATTCCCCATTTGGCAGCGTGTTCAGTGGTGTGACGGAGTAGTCCTC
GGAGCCATCCAGCTCCACCTTTTCCAGGCAGAAGGGACTGGTGGTCACGT
TTTGGATTTGTGCCTCCAAGTAGATTTCGTCGATTTCCGCATTGTAGAAC
TTGGTTTTCACATCGAGTGGCTTCAGCACTTGGAACTTGAAAAAACTTTC
TCAGCGATTGAGCATAGCCCGCAGGAGTCGAGTAGTTCACTTCGCAGACG

BS08721.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-PA 1317 CG4953-RA 490..1317 844..17 4140 100 Minus
CG4953-PA 1317 CG4953-RA 435..494 900..841 300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-RA 1746 CG4953-RA 542..1426 900..15 4405 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10267982..10268428 461..15 2235 100 Minus
2L 23513712 2L 10267427..10267736 900..590 1505 99.7 Minus
2L 23513712 2L 10267797..10267927 591..461 655 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:00:09 has no hits.

BS08721.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:16 Download gff for BS08721.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-PA 435..1317 17..900 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:26 Download gff for BS08721.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-PA 435..1317 17..900 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:46:57 Download gff for BS08721.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 542..1428 11..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:39 Download gff for BS08721.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 542..1428 11..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:39 Download gff for BS08721.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10267799..10267927 461..589 100 -> Minus
2L 10267427..10267736 590..900 99 -> Minus
2L 10267983..10268430 11..460 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:46:57 Download gff for BS08721.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10267427..10267736 590..900 99 -> Minus
arm_2L 10267799..10267927 461..589 100 -> Minus
arm_2L 10267983..10268430 11..460 99   Minus

BS08721.5prime Sequence

930 bp (832 high quality bases) assembled on 2006-01-11

> BS08721.5prime
GAAGTTATCAGTCGACATGGAGATGGTTGAACCGGATGCGCACTTGGTGG
CACTCAAAGTTATGCGTTTGATGCGGCCCACTTTGGTGGGCCTTGGACCT
GTGGTAACCTGCGAGCCCACGGATTTGGTCCAGAGATTTAGCAGCTCCCA
GGAGAGCGACGGAATGTCCGGTGCCTGTGCGGAGACCTTGGCGGCCGGCC
AGGTGCTACTGCTGCCGCAGTCCTTCGGCAGCATTTACCTGGGCGAAACA
TTCGCCAGCTACATCTGCGTCCACAATACCACCCCGAATCCGGTGGAATG
CGTCACCGTCAAGGCGGATCTACAGTCGAACACGTCACGCATCAACCTAT
CCATGCACGAGAACGCCAAGTCGCCGGTGGTATTGCCGCCGGGTGGAACC
ATTGACGATGTGATACGATACGAGGTGAAGGAAATCGGAACACACATTCT
CGTCTGCGAAGTGAACTACTCGACTCCTGCGGGCTATGCTCAATCGCTGA
GAAAGTTTTTCAAGTTCCAAGTGCTGAAGCCACTCGATGTGAAAACCAAG
TTCTACAATGCGGAAATCGACGAAATCTACTTGGAGGCACAAATCCAAAA
CGTGACCACCAGTCCCTTCTGCCTGGAAAAGGTGGAGCTGGATGGCTCCG
AGGACTACTCCGTCACACCACTGAACACGCTGCCAAATGGGGAATCCGTA
TTCACGGTGAAACATATGCTGCAACCCAACAATAGTTGTCAGTTCCTCTA
TTGCATCAAGCCCAAAGGAGATATTGCGAAGAATGTAGATACCCTGCGGC
AATTTAATAATGTGGGTAAACTGGACATCGTCTGGAGGTCGAATCTGGGC
GAGAAGGGCAGACTGCAAACCAGTCAGCTACAGCGATTGCCATTCGAAAT
GCAAACGCTCCGCCTGGAAGTACTGGATGC

BS08721.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-PA 1317 CG4953-RA 1..882 17..898 4410 100 Plus
CG4953-PA 1317 CG4953-RA 887..914 903..930 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-RA 1746 CG4953-RA 106..1021 15..930 4535 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:37:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10266911..10267300 58..447 1950 100 Plus
2L 23513712 2L 10267424..10267736 448..760 1565 100 Plus
2L 23513712 2L 10267797..10267927 759..889 655 100 Plus
2L 23513712 2L 10266808..10266852 15..59 225 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:37:28 has no hits.

BS08721.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:17 Download gff for BS08721.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-PA 1..914 17..930 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:28 Download gff for BS08721.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-PA 1..914 17..930 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:58:48 Download gff for BS08721.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 106..1021 15..930 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:55 Download gff for BS08721.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 106..1021 15..930 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:55 Download gff for BS08721.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10267799..10267927 761..889 100 -> Plus
2L 10267983..10268023 890..930 95   Plus
2L 10266913..10267300 60..447 100 -> Plus
2L 10266808..10266852 15..59 100 -> Plus
2L 10267424..10267736 448..760 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:58:48 Download gff for BS08721.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10266808..10266852 15..59 100 -> Plus
arm_2L 10266913..10267300 60..447 100 -> Plus
arm_2L 10267424..10267736 448..760 100 -> Plus
arm_2L 10267799..10267927 761..889 100 -> Plus
arm_2L 10267983..10268023 890..930 95   Plus

BS08721.complete Sequence

1349 bp (1349 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636247

> BS08721.complete
GAAGTTATCAGTCGACATGGAGATGGTTGAACCGGATGCGCACTTGGTGG
CACTCAAAGTTATGCGTTTGATGCGGCCCACTTTGGTGGGCCTTGGACCT
GTGGTAACCTGCGAGCCCACGGATTTGGTCCAGAGATTTAGCAGCTCCCA
GGAGAGCGACGGAATGTCCGGTGCCTGTGCGGAGACCTTGGCGGCCGGCC
AGGTGCTACTGCTGCCGCAGTCCTTCGGCAGCATTTACCTGGGCGAAACA
TTCGCCAGCTACATCTGCGTCCACAATACCACCCCGAATCCGGTGGAATG
CGTCACCGTCAAGGCGGATCTACAGTCGAACACGTCACGCATCAACCTAT
CCATGCACGAGAACGCCAAGTCGCCGGTGGTATTGCCGCCGGGTGGAACC
ATTGACGATGTGATACGATACGAGGTGAAGGAAATCGGAACACACATTCT
CGTCTGCGAAGTGAACTACTCGACTCCTGCGGGCTATGCTCAATCGCTGA
GAAAGTTTTTCAAGTTCCAAGTGCTGAAGCCACTCGATGTGAAAACCAAG
TTCTACAATGCGGAAATCGACGAAATCTACTTGGAGGCACAAATCCAAAA
CGTGACCACCAGTCCCTTCTGCCTGGAAAAGGTGGAGCTGGATGGCTCCG
AGGACTACTCCGTCACACCACTGAACACGCTGCCAAATGGGGAATCCGTA
TTCACGGTGAAACATATGCTGCAACCCAACAATAGTTGTCAGTTCCTCTA
TTGCATCAAGCCCAAAGGAGATATTGCGAAGAATGTAGATACCCTGCGGC
AATTTAATAATGTGGGTAAACTGGACATCGTCTGGAGGTCGAATCTGGGC
GAGAAGGGCAGACTGCAAACCAGTCAGCTACAGCGATTGCCATTCGAATG
CAAAACGCTCCGCCTGGAAGTACTGGATGCGAAGAACACCATTAAAATCG
GCACGATATTCACGTTCAATTGTCGCGTGACGAACACATCCGAGCATCCA
ATGAAACTGAATGTGCGATTGGCTGCCAAGTTTTCGCCCGATAGTCAATA
CACGGGCTGTGCTGATTTTATGCTGAATCTTCTACAAAGTGGCGAATCTG
CCGAATTTCCATTGTCCGTCTGTCCATCTAAATTGGGCCTCGTGAAAATA
ACACCCTTGGTATTGACGAATACGCTCCAAAATGAGCAGTTCACCATTGA
AAACGTCGTCGATGTTTTTGTTGTTAATTCGGATTACGATAATGATACCA
CAACTCATCAGAATAAGTTAATTCGTTACGAGAGTGCTGCAAGCTGTTTG
ACCCAAAAGCAAGTTCAACTGCAAGTTGTATAGAAGCTTTCTAGACCAT

BS08721.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-RA 1317 CG4953-PA 1..1317 17..1333 6585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-RA 1746 CG4953-RA 106..1426 15..1335 6605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:58:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10267982..10268428 889..1335 2235 100 Plus
2L 23513712 2L 10266911..10267300 58..447 1950 100 Plus
2L 23513712 2L 10267424..10267736 448..760 1565 100 Plus
2L 23513712 2L 10267797..10267927 759..889 655 100 Plus
2L 23513712 2L 10266808..10266852 15..59 225 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:58:03 has no hits.

BS08721.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:44 Download gff for BS08721.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 1..1317 17..1333 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:16 Download gff for BS08721.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 107..1429 15..1339 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:28 Download gff for BS08721.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 108..1424 17..1333 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:44 Download gff for BS08721.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 107..1429 15..1339 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:42 Download gff for BS08721.complete
Subject Subject Range Query Range Percent Splice Strand
CG4953-RA 108..1424 17..1333 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:42 Download gff for BS08721.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10266810..10266852 17..59 100 -> Plus
2L 10266913..10267300 60..447 100 -> Plus
2L 10267424..10267736 448..760 100 -> Plus
2L 10267799..10267927 761..889 100 -> Plus
2L 10267983..10268426 890..1333 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:28 Download gff for BS08721.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10267799..10267927 761..889 100 -> Plus
arm_2L 10266810..10266852 17..59 100 -> Plus
arm_2L 10266913..10267300 60..447 100 -> Plus
arm_2L 10267424..10267736 448..760 100 -> Plus
arm_2L 10267983..10268426 890..1333 100   Plus

BS08721.pep Sequence

Translation from 16 to 1332

> BS08721.pep
MEMVEPDAHLVALKVMRLMRPTLVGLGPVVTCEPTDLVQRFSSSQESDGM
SGACAETLAAGQVLLLPQSFGSIYLGETFASYICVHNTTPNPVECVTVKA
DLQSNTSRINLSMHENAKSPVVLPPGGTIDDVIRYEVKEIGTHILVCEVN
YSTPAGYAQSLRKFFKFQVLKPLDVKTKFYNAEIDEIYLEAQIQNVTTSP
FCLEKVELDGSEDYSVTPLNTLPNGESVFTVKHMLQPNNSCQFLYCIKPK
GDIAKNVDTLRQFNNVGKLDIVWRSNLGEKGRLQTSQLQRLPFECKTLRL
EVLDAKNTIKIGTIFTFNCRVTNTSEHPMKLNVRLAAKFSPDSQYTGCAD
FMLNLLQSGESAEFPLSVCPSKLGLVKITPLVLTNTLQNEQFTIENVVDV
FVVNSDYDNDTTTHQNKLIRYESAASCLTQKQVQLQVV*

BS08721.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4953-PA 438 CG4953-PA 1..438 1..438 2265 100 Plus