Clone Sequence Records
BS08723.3prime Sequence
936 bp (824 high quality bases) assembled on 2006-01-11
> BS08723.3prime
ATGGTCTAGAAAGCTTTCACGCCTTCTCCTCGTAGCCCTCGGTCTTCATG
TCATTGAGGCCCAGATCCTCGTTGTCCTCGTAGGAGCGATCGTACCGCTC
CACAGTGAGCTTGTCATCCGGCTCCGAGTCGTCATCGCTCAGTGATTGCA
CATAGGTATTACCGGCCGGATCCTCCAGCACCAGCGTAATGACTCGCTTC
AGATTCATGACATCCTCGAAGGTGTCAAGGAATCGCTGCATCTGCTGCTT
GGTCGCGTCGTCGGCGGAGTCGTGGAAAAGCGTGCCGTCCAACTGATCCC
GCATGGCAACCAGCAGACCCTCCACGGTGGTGAATCGCCCGCACAGGGCA
TGCGGACCCACCTCGAGGTCCAGCTCTGGAATAGACATGCTGCACGTCTC
CGACTTGAGGACATCACGCGTCAGATCCTCCCTGCTGGCAATCTGGACGC
GGAAGCGTACACCCTGCGCCTCCACTCCGCCGCCGGACTTCACTTCGTTC
GTCTTGTGGCCACAGGCACCGCAAACGGTGGCCATGATCACCACCTCCTT
GAAGTGCGGTATGTTTGTCAGCTTCATGTTCGTCTCGCAGGGCGCCTGGC
AGCTGGGACAATTGGTGGGGAACTGAAGCACTTCGCCGTGCAGATTCTCA
ATGGGCCACGAGTCCTCGGCAATCGGCTTCAACAAGTGCTGCTCCTCGTG
ATTCTGCTCGTACAGGCCCAATTGCTCGTTCTGCTGCTGGCTGCGTGTGA
AGTACGAAGTCTTTAGCTGCGGATCGGCGGCAGGTGCCAGGGGATTCTCG
ATGAAACTATTGCCGGATATGTCCTCGAGAAACACTTGAAAGGGTGTTGT
CACCTCCTTTAGGCGGTGCAATCGCTCGATGTACTTTTCAATTTGAAGCA
GCTGTCTCCGGATGATCGATGCGCCGCTTCTCCTGA
BS08723.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9060-PA | 1374 | Zpr1-RA | 498..1374 | 893..17 | 4360 | 99.8 | Minus |
| CG9060-PA | 1374 | Zpr1-RA | 456..499 | 936..893 | 220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zpr1-RA | 1853 | CG9060-RA | 572..1490 | 936..17 | 4560 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9160487..9161188 | 17..718 | 3510 | 100 | Plus |
| X | 23542271 | X | 9161301..9161519 | 717..936 | 1035 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:40:00 has no hits.
BS08723.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:20 Download gff for
BS08723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zpr1-PA | 457..1374 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:34 Download gff for
BS08723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9060-PA | 457..1374 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:29:22 Download gff for
BS08723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zpr1-RA | 573..1490 | 17..935 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:19 Download gff for
BS08723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zpr1-RA | 573..1490 | 17..935 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:19 Download gff for
BS08723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9160487..9161187 | 17..717 | 100 | <- | Plus |
| X | 9161302..9161518 | 718..935 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:29:22 Download gff for
BS08723.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9054520..9055220 | 17..717 | 100 | <- | Plus |
| arm_X | 9055335..9055551 | 718..935 | 99 | | Plus |
BS08723.5prime Sequence
895 bp (836 high quality bases) assembled on 2006-01-11
> BS08723.5prime
GAAGTTATCAGTCGACATGTCCACCGTGAGCGACCCCAACAGTAGCAATC
CGCCGGAGAGTGCGGGGAACATTCGGCCGGAGCCCATTTTCCGGGAAATC
AATGCGGAGCAGACCGACGAGATAGTGGAGGTCGAATCCGCCTGCATGAA
CTGCTTCGAAACGGGAGTCACTCGGCTGCTGCCCACCAAGATACCCTTTT
TTCGCGAGGTGGTGCTCATGTCCTTCAAGTGCGACCACTGCGGCCACATC
AACAACGAGATGCAGTCGGCATCGGAGATCCAAAAGTCCGGCATTCGCAT
CGAACTGCGAGTGCAATCCGTGGCTGATCTCAATCGGCGCGTGGTGCGCT
CGGATAACTCCAGCATCAGCATACCGGAGATCGAGCTAGAGATTCCGGTG
CAGTCGCAGAAGGGCGAGGTGACCACCGTCGAAGGCATCATCGAGCGGAC
GATAGCCGGCTTGTCGCAGGATCAGGAGAAGCGGCGCATCGATCATCCGG
AGACAGCTGCTTCAATTGAAAAGTACATCGAGCGATTGCACCGCCTAAAG
GAGGTGACAACACCCTTTCAAGTGCTTCTCGAGGACATATCCGGCAATAG
TTTCATCGAGAATCCCCTGGCACCTGCCGCCGATCCGCAGCTAAAGACTT
CGTACTTCACACGCAGCCAGCAGCAGAACGAGCAATTGGGCCTGTACGAG
CAGAATCACGAGGAGCAGCACTTGTTGAAGCCGATTGCCGAGGACTCGTG
GCCCATTGAGAATCTGCACGGCGAAGTGCTTCAGTTCCCCACCAATTGTC
CCAGCTGCCAGGCGCCCTGCGAGACGAACATGAAGCTGACAAACATACCG
CACTTCAAGGAGGTGGTGATCATGGCCACCGTTTGCGGTGCCTGT
BS08723.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9060-PA | 1374 | Zpr1-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zpr1-RA | 1853 | CG9060-RA | 116..995 | 16..895 | 4400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9161301..9161975 | 690..16 | 3375 | 100 | Minus |
| X | 23542271 | X | 9160982..9161188 | 895..689 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:12:42 has no hits.
BS08723.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:21 Download gff for
BS08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zpr1-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:35 Download gff for
BS08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9060-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:57 Download gff for
BS08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zpr1-RA | 107..995 | 9..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:58 Download gff for
BS08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zpr1-RA | 107..995 | 9..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:58 Download gff for
BS08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9160982..9161187 | 690..895 | 100 | <- | Minus |
| X | 9161302..9161984 | 9..689 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:57 Download gff for
BS08723.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9055015..9055220 | 690..895 | 100 | <- | Minus |
| arm_X | 9055335..9056017 | 9..689 | 99 | | Minus |
BS08723.complete Sequence
1406 bp (1406 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636248
> BS08723.complete
GAAGTTATCAGTCGACATGTCCACCGTGAGCGACCCCAACAGTAGCAATC
CGCCGGAGAGTGCGGGGAACATTCGGCCGGAGCCCATTTTCCGGGAAATC
AATGCGGAGCAGACCGACGAGATAGTGGAGGTCGAATCCGCCTGCATGAA
CTGCTTCGAAACGGGAGTCACTCGGCTGCTGCCCACCAAGATACCCTTTT
TTCGCGAGGTGGTGCTCATGTCCTTCAAGTGCGACCACTGCGGCCACATC
AACAACGAGATGCAGTCGGCATCGGAGATCCAAAAGTCCGGCATTCGCAT
CGAACTGCGAGTGCAATCCGTGGCTGATCTCAATCGGCGCGTGGTGCGCT
CGGATAACTCCAGCATCAGCATACCGGAGATCGAGCTAGAGATTCCGGTG
CAGTCGCAGAAGGGCGAGGTGACCACCGTCGAAGGCATCATCGAGCGGAC
GATAGCCGGCTTGTCGCAGGATCAGGAGAAGCGGCGCATCGATCATCCGG
AGACAGCTGCTTCAATTGAAAAGTACATCGAGCGATTGCACCGCCTAAAG
GAGGTGACAACACCCTTTCAAGTGCTTCTCGAGGACATATCCGGCAATAG
TTTCATCGAGAATCCCCTGGCACCTGCCGCCGATCCGCAGCTAAAGACTT
CGTACTTCACACGCAGCCAGCAGCAGAACGAGCAATTGGGCCTGTACGAG
CAGAATCACGAGGAGCAGCACTTGTTGAAGCCGATTGCCGAGGACTCGTG
GCCCATTGAGAATCTGCACGGCGAAGTGCTTCAGTTCCCCACCAATTGTC
CCAGCTGCCAGGCGCCCTGCGAGACGAACATGAAGCTGACAAACATACCG
CACTTCAAGGAGGTGGTGATCATGGCCACCGTTTGCGGTGCCTGTGGCCA
CAAGACGAACGAAGTGAAGTCCGGCGGCGGAGTGGAGGCGCAGGGTGTAC
GCTTCCGCGTCCAGATTGCCAGCAGGGAGGATCTGACGCGTGATGTCCTC
AAGTCGGAGACGTGCAGCATGTCTATTCCAGAGCTGGACCTCGAGGTGGG
TCCGCATGCCCTGTGCGGGCGATTCACCACCGTGGAGGGTCTGCTGGTTG
CCATGCGGGATCAGTTGGACGGCACGCTTTTCCACGACTCCGCCGACGAC
GCGACCAAGCAGCAGATGCAGCGATTCCTTGACACCTTCGAGGATGTCAT
GAATCTGAAGCGAGTCATTACGCTGGTGCTGGAGGATCCGGCCGGTAATA
CCTATGTGCAATCACTGAGCGATGACGACTCGGAGCCGGATGACAAGCTC
ACTGTGGAGCGGTACGATCGCTCCTACGAGGACAACGAGGATCTGGGCCT
CAATGACATGAAGACCGAGGGCTACGAGGAGAAGGCGTGAAAGCTTTCTA
GACCAT
BS08723.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zpr1-RA | 1374 | CG9060-PA | 1..1374 | 17..1390 | 6870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zpr1-RA | 1853 | CG9060-RA | 116..1490 | 16..1390 | 6875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9160487..9161188 | 1390..689 | 3510 | 100 | Minus |
| X | 23542271 | X | 9161301..9161975 | 690..16 | 3375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:08:03 has no hits.
BS08723.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:45 Download gff for
BS08723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zpr1-RA | 1..1374 | 17..1390 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:17 Download gff for
BS08723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zpr1-RA | 58..1441 | 9..1390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:31 Download gff for
BS08723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zpr1-RA | 117..1489 | 17..1389 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:45 Download gff for
BS08723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zpr1-RA | 58..1441 | 9..1390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:07 Download gff for
BS08723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zpr1-RA | 117..1489 | 17..1389 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:07 Download gff for
BS08723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9160488..9161187 | 690..1389 | 100 | <- | Minus |
| X | 9161302..9161974 | 17..689 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:31 Download gff for
BS08723.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9054521..9055220 | 690..1389 | 100 | <- | Minus |
| arm_X | 9055335..9056007 | 17..689 | 100 | | Minus |
BS08723.pep Sequence
Translation from 16 to 1389
> BS08723.pep
MSTVSDPNSSNPPESAGNIRPEPIFREINAEQTDEIVEVESACMNCFETG
VTRLLPTKIPFFREVVLMSFKCDHCGHINNEMQSASEIQKSGIRIELRVQ
SVADLNRRVVRSDNSSISIPEIELEIPVQSQKGEVTTVEGIIERTIAGLS
QDQEKRRIDHPETAASIEKYIERLHRLKEVTTPFQVLLEDISGNSFIENP
LAPAADPQLKTSYFTRSQQQNEQLGLYEQNHEEQHLLKPIAEDSWPIENL
HGEVLQFPTNCPSCQAPCETNMKLTNIPHFKEVVIMATVCGACGHKTNEV
KSGGGVEAQGVRFRVQIASREDLTRDVLKSETCSMSIPELDLEVGPHALC
GRFTTVEGLLVAMRDQLDGTLFHDSADDATKQQMQRFLDTFEDVMNLKRV
ITLVLEDPAGNTYVQSLSDDDSEPDDKLTVERYDRSYEDNEDLGLNDMKT
EGYEEKA*
BS08723.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zpr1-PA | 457 | CG9060-PA | 1..457 | 1..457 | 2366 | 100 | Plus |
