Clone BS08725 Report

Search the DGRC for BS08725

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptPIG-U-RA
Protein status:BS08725.pep: full length peptide match
Sequenced Size:1313

Clone Sequence Records

BS08725.5prime Sequence

857 bp (788 high quality bases) assembled on 2006-01-11

> BS08725.5prime
GAAGTTATCAGTCGACATGGATTCGAAGTTCTTTAAACTGCTCCTGCTGG
GCGGCGCCGTGCGCTTCTACTTCTGTCGCACGCCGCTGGCTCCGATGATT
GGCAACCGAGTGGAGTTCGCGACACCTTTAAATTCACACAAGCGCATGCA
AGAGGGGATATTTCTTCTACAGAGTGGCATTGATCCCTATCTGGGCGACC
TGGTACACGAATCGCCGCTGATACTCAGCGCGCTCTCCGGATTGTTTCAA
AAATACCCGCAGTTTCTGCCGATATTCTACATAATCCTGGATATCTGCAC
GGCGGCCCTGCTTTATGCGATGAGTCTGAGATTCGTCAAGCAAAAGCAGG
ATCAGCAGGACAAGGAGCGAAAGGAGTATGCCAAGGATACGGAAGAGCTG
CAGTTTGGCCCGCTGGACAAGCTTGACATTCCGGAACTTGTGATCGTGGC
ATATCTTTTCAGTCCACTGACTGTTATGAGCTGCATTGGAATGACCTCCA
CCGTGATAAGCAATCTGTTCCTGGCTTTCTTTTTCTACTGCCTCGTGAAG
GGAATGCTCATTCCATGCCTTCTAGTCCTCGCGTTCGAAACTGTCCGCAG
CTTCTATCCCATTGTACTTATAGCACCACTGCTCCTGGTCTTTTCACGGA
ATTCGGTCAGGAGGGGTGTGGCTATAGCGGCGCTCTTTATCGTCAGTTGT
CTAATCGTGGCAGTTGCGAACTATTTTGTGCTGAACAGCTGGAACTTCCT
GGATGGAACGTTGGGTTTTATATTTTATTTCCGCGATCTACAGCCAAATA
TCGGTCTCTTCTGGTACTTTTTTACTGAAATGTTTGAGCACTTCCGCACC
ATGTTTC

BS08725.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13089-PA 1281 CG13089-RA 1..839 17..855 4195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-U-RA 1478 CG13089-RA 58..896 17..855 4195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8515343..8515967 147..771 3125 100 Plus
2L 23513712 2L 8515153..8515282 17..146 650 100 Plus
2L 23513712 2L 8516030..8516113 772..855 420 100 Plus
Blast to na_te.dros performed 2015-02-11 10:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 3472..3534 278..214 122 67.7 Minus

BS08725.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:22 Download gff for BS08725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13089-PA 1..840 17..857 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:37 Download gff for BS08725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13089-PA 1..840 17..857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:08 Download gff for BS08725.5prime
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 58..897 17..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:12 Download gff for BS08725.5prime
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 58..897 17..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:12 Download gff for BS08725.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8515153..8515282 17..146 100 -> Plus
2L 8515343..8515967 147..771 100 -> Plus
2L 8516030..8516114 772..857 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:08 Download gff for BS08725.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8515153..8515282 17..146 100 -> Plus
arm_2L 8515343..8515967 147..771 100 -> Plus
arm_2L 8516030..8516114 772..857 98   Plus

BS08725.complete Sequence

1313 bp assembled on 2009-02-12

> BS08725.complete
GAAGTTATCAGTCGACATGGATTCGAAGTTCTTTAAACTGCTCCTGCTGG
GCGGCGCCGTGCGCTTCTACTTCTGTCGCACGCCGCTGGCTCCGATGATT
GGCAACCGAGTGGAGTTCGCGACACCTTTAAATTCACACAAGCGCATGCA
AGAGGGGATATTTCTTCTACAGAGTGGCATTGATCCCTATCTGGGCGACC
TGGTACACGAATCGCCGCTGATACTCAGCGCGCTCTCCGGATTGTTTCAA
AAATACCCGCAGTTTCTGCCGATATTCTACATAATCCTGGATATCTGCAC
GGCGGCCCTGCTTTATGCGATGAGTCTGAGATTCGTCAAGCAAAAGCAGG
ATCAGCAGGACAAGGAGCGAAAGGAGTATGCCAAGGATACGGAAGAGCTG
CAGTTTGGCCCGCTGGACAAGCTTGACATTCCGGAACTTGTGATCGTGGC
ATATCTTTTCAGTCCACTGACTGTTATGAGCTGCATTGGAATGACCTCCA
CCGTGATAAGCAATCTGTTCCTGGCTTTCTTTTTCTACTGCCTCGTGAAG
GGAATGCTCATTCCATGCCTTCTAGTCCTCGCGTTCGAAACTGTCCGCAG
CTTCTATCCCATTGTACTTATAGCACCACTGCTCCTGGTCTTTTCACGGA
ATTCGGTCAGGAGGGGTGTGGCTATAGCGGCGCTCTTTATCGTCAGTTGT
CTAATCGTGGCAGTTGCGAACTATTTTGTGCTGAACAGCTGGAACTTCCT
GGATGGAACGTTGGGTTTTATATTTTATTTCCGCGATCTACAGCCAAATA
TCGGTCTCTTCTGGTACTTTTTTACTGAAATGTTTGAGCACTTCCGCACC
ATGTTCCTAATCACATTCCAATTGAATGCCACCGTATTATACCTGGTGCC
ACTAAGTATTAAGCTGCGCAAGGAGCCCCTACTGCTAGCCACGGTATTGG
TGGCCCTTATGGCCGTTTTTAGGGCGTATCCCAGCCTGGGCGATGTCGGC
TTTTATCTGGCCTTGCTTCCGCTGTGGAAAAGATGTTGGAAATTCATGGC
CCATGGCTTTGTGGTCTTTACGTTCTTCCTGGTCACTCTATCTATGATGG
GAGCCCTTTGGCATTTGTGGATCTATGCAGGATCGGCAAATGCCAATTTC
TATTTCGGTGCCACTCTTGCGTTTTCCACTGGGCAGATATTTCTAATCAC
CGATCTGCTGTTCGCGCACGTTAAACGTGAGTTCTGCTTGTTCAATGGTC
AGAAGATTCTGATCGATGGCGAGGAAGCGAGGATAGTCTTAAAGTAAAAG
CTTTCTAGACCAT

BS08725.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-U-RA 1281 CG13089-PA 1..1281 17..1297 6405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-U-RA 1478 CG13089-RA 58..1338 17..1297 6405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8515343..8515967 147..771 3125 100 Plus
2L 23513712 2L 8516030..8516301 772..1043 1360 100 Plus
2L 23513712 2L 8516362..8516615 1044..1297 1270 100 Plus
2L 23513712 2L 8515153..8515282 17..146 650 100 Plus
Blast to na_te.dros performed 2014-11-27 13:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 3472..3534 278..214 122 67.7 Minus

BS08725.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:48 Download gff for BS08725.complete
Subject Subject Range Query Range Percent Splice Strand
CG13089-RA 56..1334 17..1295 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:31 Download gff for BS08725.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 58..1336 17..1295 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:39 Download gff for BS08725.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 58..1336 17..1295 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:39 Download gff for BS08725.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8516362..8516613 1044..1295 100   Plus
2L 8515153..8515282 17..146 100 -> Plus
2L 8515343..8515967 147..771 100 -> Plus
2L 8516030..8516301 772..1043 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:31 Download gff for BS08725.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8515153..8515282 17..146 100 -> Plus
arm_2L 8515343..8515967 147..771 100 -> Plus
arm_2L 8516030..8516301 772..1043 100 -> Plus
arm_2L 8516362..8516613 1044..1295 100   Plus

BS08725.pep Sequence

Translation from 16 to 1296

> BS08725.pep
MDSKFFKLLLLGGAVRFYFCRTPLAPMIGNRVEFATPLNSHKRMQEGIFL
LQSGIDPYLGDLVHESPLILSALSGLFQKYPQFLPIFYIILDICTAALLY
AMSLRFVKQKQDQQDKERKEYAKDTEELQFGPLDKLDIPELVIVAYLFSP
LTVMSCIGMTSTVISNLFLAFFFYCLVKGMLIPCLLVLAFETVRSFYPIV
LIAPLLLVFSRNSVRRGVAIAALFIVSCLIVAVANYFVLNSWNFLDGTLG
FIFYFRDLQPNIGLFWYFFTEMFEHFRTMFLITFQLNATVLYLVPLSIKL
RKEPLLLATVLVALMAVFRAYPSLGDVGFYLALLPLWKRCWKFMAHGFVV
FTFFLVTLSMMGALWHLWIYAGSANANFYFGATLAFSTGQIFLITDLLFA
HVKREFCLFNGQKILIDGEEARIVLK*

BS08725.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-U-PA 426 CG13089-PA 1..426 1..426 2200 100 Plus