Clone Sequence Records
BS08725.5prime Sequence
857 bp (788 high quality bases) assembled on 2006-01-11
> BS08725.5prime
GAAGTTATCAGTCGACATGGATTCGAAGTTCTTTAAACTGCTCCTGCTGG
GCGGCGCCGTGCGCTTCTACTTCTGTCGCACGCCGCTGGCTCCGATGATT
GGCAACCGAGTGGAGTTCGCGACACCTTTAAATTCACACAAGCGCATGCA
AGAGGGGATATTTCTTCTACAGAGTGGCATTGATCCCTATCTGGGCGACC
TGGTACACGAATCGCCGCTGATACTCAGCGCGCTCTCCGGATTGTTTCAA
AAATACCCGCAGTTTCTGCCGATATTCTACATAATCCTGGATATCTGCAC
GGCGGCCCTGCTTTATGCGATGAGTCTGAGATTCGTCAAGCAAAAGCAGG
ATCAGCAGGACAAGGAGCGAAAGGAGTATGCCAAGGATACGGAAGAGCTG
CAGTTTGGCCCGCTGGACAAGCTTGACATTCCGGAACTTGTGATCGTGGC
ATATCTTTTCAGTCCACTGACTGTTATGAGCTGCATTGGAATGACCTCCA
CCGTGATAAGCAATCTGTTCCTGGCTTTCTTTTTCTACTGCCTCGTGAAG
GGAATGCTCATTCCATGCCTTCTAGTCCTCGCGTTCGAAACTGTCCGCAG
CTTCTATCCCATTGTACTTATAGCACCACTGCTCCTGGTCTTTTCACGGA
ATTCGGTCAGGAGGGGTGTGGCTATAGCGGCGCTCTTTATCGTCAGTTGT
CTAATCGTGGCAGTTGCGAACTATTTTGTGCTGAACAGCTGGAACTTCCT
GGATGGAACGTTGGGTTTTATATTTTATTTCCGCGATCTACAGCCAAATA
TCGGTCTCTTCTGGTACTTTTTTACTGAAATGTTTGAGCACTTCCGCACC
ATGTTTC
BS08725.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13089-PA | 1281 | CG13089-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:38:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PIG-U-RA | 1478 | CG13089-RA | 58..896 | 17..855 | 4195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8515343..8515967 | 147..771 | 3125 | 100 | Plus |
2L | 23513712 | 2L | 8515153..8515282 | 17..146 | 650 | 100 | Plus |
2L | 23513712 | 2L | 8516030..8516113 | 772..855 | 420 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 10:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 3472..3534 | 278..214 | 122 | 67.7 | Minus |
BS08725.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:22 Download gff for
BS08725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13089-PA | 1..840 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:37 Download gff for
BS08725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13089-PA | 1..840 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:08 Download gff for
BS08725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-U-RA | 58..897 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:12 Download gff for
BS08725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-U-RA | 58..897 | 17..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:12 Download gff for
BS08725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8515153..8515282 | 17..146 | 100 | -> | Plus |
2L | 8515343..8515967 | 147..771 | 100 | -> | Plus |
2L | 8516030..8516114 | 772..857 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:08 Download gff for
BS08725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8515153..8515282 | 17..146 | 100 | -> | Plus |
arm_2L | 8515343..8515967 | 147..771 | 100 | -> | Plus |
arm_2L | 8516030..8516114 | 772..857 | 98 | | Plus |
BS08725.complete Sequence
1313 bp assembled on 2009-02-12
> BS08725.complete
GAAGTTATCAGTCGACATGGATTCGAAGTTCTTTAAACTGCTCCTGCTGG
GCGGCGCCGTGCGCTTCTACTTCTGTCGCACGCCGCTGGCTCCGATGATT
GGCAACCGAGTGGAGTTCGCGACACCTTTAAATTCACACAAGCGCATGCA
AGAGGGGATATTTCTTCTACAGAGTGGCATTGATCCCTATCTGGGCGACC
TGGTACACGAATCGCCGCTGATACTCAGCGCGCTCTCCGGATTGTTTCAA
AAATACCCGCAGTTTCTGCCGATATTCTACATAATCCTGGATATCTGCAC
GGCGGCCCTGCTTTATGCGATGAGTCTGAGATTCGTCAAGCAAAAGCAGG
ATCAGCAGGACAAGGAGCGAAAGGAGTATGCCAAGGATACGGAAGAGCTG
CAGTTTGGCCCGCTGGACAAGCTTGACATTCCGGAACTTGTGATCGTGGC
ATATCTTTTCAGTCCACTGACTGTTATGAGCTGCATTGGAATGACCTCCA
CCGTGATAAGCAATCTGTTCCTGGCTTTCTTTTTCTACTGCCTCGTGAAG
GGAATGCTCATTCCATGCCTTCTAGTCCTCGCGTTCGAAACTGTCCGCAG
CTTCTATCCCATTGTACTTATAGCACCACTGCTCCTGGTCTTTTCACGGA
ATTCGGTCAGGAGGGGTGTGGCTATAGCGGCGCTCTTTATCGTCAGTTGT
CTAATCGTGGCAGTTGCGAACTATTTTGTGCTGAACAGCTGGAACTTCCT
GGATGGAACGTTGGGTTTTATATTTTATTTCCGCGATCTACAGCCAAATA
TCGGTCTCTTCTGGTACTTTTTTACTGAAATGTTTGAGCACTTCCGCACC
ATGTTCCTAATCACATTCCAATTGAATGCCACCGTATTATACCTGGTGCC
ACTAAGTATTAAGCTGCGCAAGGAGCCCCTACTGCTAGCCACGGTATTGG
TGGCCCTTATGGCCGTTTTTAGGGCGTATCCCAGCCTGGGCGATGTCGGC
TTTTATCTGGCCTTGCTTCCGCTGTGGAAAAGATGTTGGAAATTCATGGC
CCATGGCTTTGTGGTCTTTACGTTCTTCCTGGTCACTCTATCTATGATGG
GAGCCCTTTGGCATTTGTGGATCTATGCAGGATCGGCAAATGCCAATTTC
TATTTCGGTGCCACTCTTGCGTTTTCCACTGGGCAGATATTTCTAATCAC
CGATCTGCTGTTCGCGCACGTTAAACGTGAGTTCTGCTTGTTCAATGGTC
AGAAGATTCTGATCGATGGCGAGGAAGCGAGGATAGTCTTAAAGTAAAAG
CTTTCTAGACCAT
BS08725.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PIG-U-RA | 1281 | CG13089-PA | 1..1281 | 17..1297 | 6405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PIG-U-RA | 1478 | CG13089-RA | 58..1338 | 17..1297 | 6405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8515343..8515967 | 147..771 | 3125 | 100 | Plus |
2L | 23513712 | 2L | 8516030..8516301 | 772..1043 | 1360 | 100 | Plus |
2L | 23513712 | 2L | 8516362..8516615 | 1044..1297 | 1270 | 100 | Plus |
2L | 23513712 | 2L | 8515153..8515282 | 17..146 | 650 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 3472..3534 | 278..214 | 122 | 67.7 | Minus |
BS08725.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:48 Download gff for
BS08725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13089-RA | 56..1334 | 17..1295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:31 Download gff for
BS08725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-U-RA | 58..1336 | 17..1295 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:39 Download gff for
BS08725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-U-RA | 58..1336 | 17..1295 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:39 Download gff for
BS08725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8516362..8516613 | 1044..1295 | 100 | | Plus |
2L | 8515153..8515282 | 17..146 | 100 | -> | Plus |
2L | 8515343..8515967 | 147..771 | 100 | -> | Plus |
2L | 8516030..8516301 | 772..1043 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:31 Download gff for
BS08725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8515153..8515282 | 17..146 | 100 | -> | Plus |
arm_2L | 8515343..8515967 | 147..771 | 100 | -> | Plus |
arm_2L | 8516030..8516301 | 772..1043 | 100 | -> | Plus |
arm_2L | 8516362..8516613 | 1044..1295 | 100 | | Plus |
BS08725.pep Sequence
Translation from 16 to 1296
> BS08725.pep
MDSKFFKLLLLGGAVRFYFCRTPLAPMIGNRVEFATPLNSHKRMQEGIFL
LQSGIDPYLGDLVHESPLILSALSGLFQKYPQFLPIFYIILDICTAALLY
AMSLRFVKQKQDQQDKERKEYAKDTEELQFGPLDKLDIPELVIVAYLFSP
LTVMSCIGMTSTVISNLFLAFFFYCLVKGMLIPCLLVLAFETVRSFYPIV
LIAPLLLVFSRNSVRRGVAIAALFIVSCLIVAVANYFVLNSWNFLDGTLG
FIFYFRDLQPNIGLFWYFFTEMFEHFRTMFLITFQLNATVLYLVPLSIKL
RKEPLLLATVLVALMAVFRAYPSLGDVGFYLALLPLWKRCWKFMAHGFVV
FTFFLVTLSMMGALWHLWIYAGSANANFYFGATLAFSTGQIFLITDLLFA
HVKREFCLFNGQKILIDGEEARIVLK*
BS08725.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PIG-U-PA | 426 | CG13089-PA | 1..426 | 1..426 | 2200 | 100 | Plus |