Clone Sequence Records
BS08726.3prime Sequence
855 bp (796 high quality bases) assembled on 2006-01-11
> BS08726.3prime
ATGGTCTAGAAAGCTTCTACCAGGCCGAGGGTGGACCACCGCTGCTCCAG
CCACCGGAAGCGGCACCTCCGCCGGAGCTCCAGCCACCGGAAGCGGCACC
TCCGCCGGAGCTCCAGCCACCGGAAATGGCACCGCCACCAGAGCCCCAGC
CTCCCTTGGAGCCACCAGCGCTCTGGGATTGCTGCTGCTCCTGGACGCGC
ATCACCTTCAGGGTTCCCCGCTGCACCACGTGTCCGCTTTTGAAGAAGGC
TCCCTGCGCCTGATCGGCCTTCAAAATGATAGCCTTGCCCTTGGAGCCGA
AGGTGTTGATCAGCTGGCCATTGATGGCAGCCACATCAGCGGATCCACCA
CCGCCGCCGCCAAAGGAATCCTCCTGCAGCACCAACTGGATGATCTGCGG
CAGAATGGCATTGAACTGCTGGGTATCGAAGGAGGCGCCACCACCGTAAC
CATGTCCCGAAGCATACGACTGGCCGTAGGAGTGCGAATGGCCCTGATCA
TAGGAGTAGCCATTGGAGCCACTGGCAGCATGATAGGCAATGGGAGCAGC
TGGCGGAGCAGGGGCAGGAATCGAAATCGGAATGGGAACGGGGGCAGGAG
CTGGGACTGGAGCCGGGGCCTGTTCGATGATCTTGTATATCTGGGCCTGC
TGACCGCCATAGGATCCGTGACCACTGGCGTAGCCATGACCATGACCGTG
ACTGTAGCCATGACCTTCCGAGGACACAATGCCGCCGGCTGATCCTCCAG
CGTTGCTGTAGCCCTGACCCTCCTGCAGAATGACCTTGATGATCTGCGGT
GAGCCACCGTGTCCATGTCCGTAGCCATGTCCCTGCGCATACCCATGACC
TCCGC
BS08726.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2961-PA | 1050 | Ipod-RA | 212..1050 | 855..17 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:56:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipod-RC | 1871 | CG2961-RC | 854..1693 | 855..16 | 4200 | 100 | Minus |
| Ipod-RB | 1593 | CG2961-RB | 576..1415 | 855..16 | 4200 | 100 | Minus |
| Ipod-RA | 1328 | CG2961-RA | 311..1150 | 855..16 | 4200 | 100 | Minus |
| Ipod-RC | 1871 | CG2961-RC | 1558..1632 | 118..44 | 285 | 92 | Minus |
| Ipod-RC | 1871 | CG2961-RC | 1591..1665 | 151..77 | 285 | 92 | Minus |
| Ipod-RB | 1593 | CG2961-RB | 1280..1354 | 118..44 | 285 | 92 | Minus |
| Ipod-RB | 1593 | CG2961-RB | 1313..1387 | 151..77 | 285 | 92 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10231180..10232019 | 16..855 | 4200 | 100 | Plus |
| X | 23542271 | X | 10231208..10231282 | 77..151 | 285 | 92 | Plus |
| X | 23542271 | X | 10231241..10231315 | 44..118 | 285 | 92 | Plus |
Blast to na_te.dros performed on 2015-02-01 06:56:54 has no hits.
BS08726.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:23 Download gff for
BS08726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipod-PA | 212..1050 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:39 Download gff for
BS08726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2961-PA | 212..1050 | 17..855 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:09:07 Download gff for
BS08726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipod-RA | 311..1153 | 13..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:39:31 Download gff for
BS08726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipod-RA | 311..1153 | 13..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:39:31 Download gff for
BS08726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10231177..10232019 | 13..855 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:09:07 Download gff for
BS08726.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10125210..10126052 | 13..855 | 99 | | Plus |
BS08726.5prime Sequence
806 bp (804 high quality bases) assembled on 2006-01-11
> BS08726.5prime
GAAGTTATCAGTCGACATGAAGGTCTTCATCTGCCTGTTGGCCACCATCT
GCGCCTGCAATGCCACCTTCCTGTCCCTTCTGGGCGGCGGCGGCGGTGGT
GGAGGAGGAGGAGGTAGCAAGACCACTTACAATGTGATAGCCACGCCCAG
TTCGGGAGGCGGCGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGAGGTC
ACGGATATTCATATGCCCAGGGAGGCGGCGGAGGTCATGGGTATGCGCAG
GGACATGGCTACGGACATGGACACGGTGGCTCACCGCAGATCATCAAGGT
CATTCTGCAGGAGGGTCAGGGCTACAGCAACGCTGGAGGATCAGCCGGCG
GCATTGTGTCCTCGGAAGGTCATGGCTACAGTCACGGTCATGGTCATGGC
TACGCCAGTGGTCACGGATCCTATGGCGGTCAGCAGGCCCAGATATACAA
GATCATCGAACAGGCCCCGGCTCCAGTCCCAGCTCCTGCCCCCGTTCCCA
TTCCGATTTCGATTCCTGCCCCTGCTCCGCCAGCTGCTCCCATTGCCTAT
CATGCTGCCAGTGGCTCCAATGGCTACTCCTATGATCAGGGCCATTCGCA
CTCCTACGGCCAGTCGTATGCTTCGGGACATGGTTACGGTGGTGGCGCCT
CCTTCGATACCCAGCAGTTCAATGCCATTCTGCCGCAGATCATCCAGTTG
GTGCTGCAGGAGGATTCCTTTGGCGGCGGCGGTGGTGGATCCGCTGATGT
GGCTGCCATCAATGGCCAGCTGATCAACACCTTCGGCTCCAAGGGCAAGG
CTATCA
BS08726.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2961-PA | 1050 | Ipod-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipod-RC | 1871 | CG2961-RC | 643..1432 | 17..806 | 3950 | 100 | Plus |
| Ipod-RB | 1593 | CG2961-RB | 365..1154 | 17..806 | 3950 | 100 | Plus |
| Ipod-RA | 1328 | CG2961-RA | 100..889 | 17..806 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10231441..10232226 | 806..21 | 3930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:35:51 has no hits.
BS08726.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:24 Download gff for
BS08726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipod-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:41 Download gff for
BS08726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2961-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:35:46 Download gff for
BS08726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipod-RA | 97..888 | 14..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:17:22 Download gff for
BS08726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipod-RA | 97..888 | 14..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:17:22 Download gff for
BS08726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10231442..10232230 | 16..805 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:35:46 Download gff for
BS08726.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10125475..10126263 | 16..805 | 99 | | Minus |
BS08726.complete Sequence
1082 bp (1082 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636249
> BS08726.complete
GAAGTTATCAGTCGACATGAAGGTCTTCATCTGCCTGTTGGCCACCATCT
GCGCCTGCAATGCCACCTTCCTGTCCCTTCTGGGCGGCGGCGGCGGTGGT
GGAGGAGGAGGAGGTAGCAAGACCACTTACAATGTGATAGCCACGCCCAG
TTCGGGAGGCGGCGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGAGGTC
ACGGATATTCATATGCCCAGGGAGGCGGCGGAGGTCATGGGTATGCGCAG
GGACATGGCTACGGACATGGACACGGTGGCTCACCGCAGATCATCAAGGT
CATTCTGCAGGAGGGTCAGGGCTACAGCAACGCTGGAGGATCAGCCGGCG
GCATTGTGTCCTCGGAAGGTCATGGCTACAGTCACGGTCATGGTCATGGC
TACGCCAGTGGTCACGGATCCTATGGCGGTCAGCAGGCCCAGATATACAA
GATCATCGAACAGGCCCCGGCTCCAGTCCCAGCTCCTGCCCCCGTTCCCA
TTCCGATTTCGATTCCTGCCCCTGCTCCGCCAGCTGCTCCCATTGCCTAT
CATGCTGCCAGTGGCTCCAATGGCTACTCCTATGATCAGGGCCATTCGCA
CTCCTACGGCCAGTCGTATGCTTCGGGACATGGTTACGGTGGTGGCGCCT
CCTTCGATACCCAGCAGTTCAATGCCATTCTGCCGCAGATCATCCAGTTG
GTGCTGCAGGAGGATTCCTTTGGCGGCGGCGGTGGTGGATCCGCTGATGT
GGCTGCCATCAATGGCCAGCTGATCAACACCTTCGGCTCCAAGGGCAAGG
CTATCATTTTGAAGGCCGATCAGGCGCAGGGAGCCTTCTTCAAAAGCGGA
CACGTGGTGCAGCGGGGAACCCTGAAGGTGATGCGCGTCCAGGAGCAGCA
GCAATCCCAGAGCGCTGGTGGCTCCAAGGGAGGCTGGGGCTCTGGTGGCG
GTGCCATTTCCGGTGGCTGGAGCTCCGGCGGAGGTGCCGCTTCCGGTGGC
TGGAGCTCCGGCGGAGGTGCCGCTTCCGGTGGCTGGAGCAGCGGTGGTCC
ACCCTCGGCCTGGTAGAAGCTTTCTAGACCAT
BS08726.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipod-RC | 1050 | CG2961-PC | 1..1050 | 17..1066 | 5250 | 100 | Plus |
| Ipod-RB | 1050 | CG2961-PB | 1..1050 | 17..1066 | 5250 | 100 | Plus |
| Ipod-RA | 1050 | CG2961-PA | 1..1050 | 17..1066 | 5250 | 100 | Plus |
| Ipod-RC | 1050 | CG2961-PC | 916..990 | 965..1039 | 285 | 92 | Plus |
| Ipod-RC | 1050 | CG2961-PC | 949..1023 | 932..1006 | 285 | 92 | Plus |
| Ipod-RB | 1050 | CG2961-PB | 916..990 | 965..1039 | 285 | 92 | Plus |
| Ipod-RB | 1050 | CG2961-PB | 949..1023 | 932..1006 | 285 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:35:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipod-RC | 1871 | CG2961-RC | 643..1693 | 17..1067 | 5255 | 100 | Plus |
| Ipod-RB | 1593 | CG2961-RB | 365..1415 | 17..1067 | 5255 | 100 | Plus |
| Ipod-RA | 1328 | CG2961-RA | 100..1150 | 17..1067 | 5255 | 100 | Plus |
| Ipod-RC | 1871 | CG2961-RC | 1591..1665 | 932..1006 | 285 | 92 | Plus |
| Ipod-RC | 1871 | CG2961-RC | 1558..1632 | 965..1039 | 285 | 92 | Plus |
| Ipod-RB | 1593 | CG2961-RB | 1280..1354 | 965..1039 | 285 | 92 | Plus |
| Ipod-RB | 1593 | CG2961-RB | 1313..1387 | 932..1006 | 285 | 92 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10231180..10232226 | 1067..21 | 5235 | 100 | Minus |
| X | 23542271 | X | 10231208..10231282 | 1006..932 | 285 | 92 | Minus |
| X | 23542271 | X | 10231241..10231315 | 1039..965 | 285 | 92 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:35:45 has no hits.
BS08726.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:46 Download gff for
BS08726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipod-RA | 1..1050 | 17..1066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:19 Download gff for
BS08726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipod-RA | 94..1150 | 14..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:04:50 Download gff for
BS08726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipod-RA | 100..1149 | 17..1066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:46 Download gff for
BS08726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipod-RA | 94..1150 | 14..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:22:49 Download gff for
BS08726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ipod-RA | 100..1149 | 17..1066 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:22:49 Download gff for
BS08726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10231181..10232229 | 17..1066 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:04:50 Download gff for
BS08726.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10125214..10126262 | 17..1066 | 99 | | Minus |
BS08726.pep Sequence
Translation from 16 to 1065
> BS08726.pep
MKVFICLLATICACNATFLSLLGGGGGGGGGGGSKTTYNVIATPSSGGGG
GGGGGGGGGGGHGYSYAQGGGGGHGYAQGHGYGHGHGGSPQIIKVILQEG
QGYSNAGGSAGGIVSSEGHGYSHGHGHGYASGHGSYGGQQAQIYKIIEQA
PAPVPAPAPVPIPISIPAPAPPAAPIAYHAASGSNGYSYDQGHSHSYGQS
YASGHGYGGGASFDTQQFNAILPQIIQLVLQEDSFGGGGGGSADVAAING
QLINTFGSKGKAIILKADQAQGAFFKSGHVVQRGTLKVMRVQEQQQSQSA
GGSKGGWGSGGGAISGGWSSGGGAASGGWSSGGGAASGGWSSGGPPSAW*
BS08726.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ipod-PC | 349 | CG2961-PC | 1..349 | 1..349 | 1891 | 100 | Plus |
| Ipod-PB | 349 | CG2961-PB | 1..349 | 1..349 | 1891 | 100 | Plus |
| Ipod-PA | 349 | CG2961-PA | 1..349 | 1..349 | 1891 | 100 | Plus |
| CG12523-PB | 250 | CG12523-PB | 12..246 | 42..344 | 280 | 31.4 | Plus |
| CG15731-PA | 319 | CG15731-PA | 1..236 | 1..210 | 268 | 33.6 | Plus |
| CG12523-PB | 250 | CG12523-PB | 1..244 | 1..212 | 249 | 36.5 | Plus |
| CG12523-PB | 250 | CG12523-PB | 14..205 | 174..348 | 165 | 29.6 | Plus |
