Clone Sequence Records
BS08729.3prime Sequence
841 bp (796 high quality bases) assembled on 2006-01-11
> BS08729.3prime
ATGGTCTAGAAAGCTTCTACTGATCGTCCGCGTTTGTGAGATGCAGATTT
GCCGATGGATGCAGGCCGAGTTCCTTCAGGGAGCTATCGTTATGCTCCGC
CTCCAGGAATTTTCGCGGGAAGGCGCAAATGAGCTTGTAGCCGTCCTGAG
GGATGTGCTTGTGCGTCTGGCTGATGTACAGCCGCAAAGTTTGCAGTTTG
GTGTCCGAGGGCCAGCGCAGCTGGACCATCTCATCTGTTCCGGCGGCGTT
GAGCAGGCGCAGTTTAAGGGCAGTCAATTCAGTCTTGGCCTCGCCCAAGT
GATTCTCGAAAGAGGCGGCGGCCACACCCTTGAGCTCCTCATCATCGAAC
TCCTCAAGGCTCTCATTATCGCTGGCTCCATCGGGACTATCGTTTTTCTG
GTTGCCTTCGCCTCCGCCACCACCGTTCTCGTTTATGGAATTCTTGATGG
CCAACTCAAGCTGCTCCTCTTCGGTTAGCTCCAGAACCTTGGCACGTTTC
TTGGGCATTTCCTTCGAACTGGCTGTCGAGGAGCACGAGGCCTCCGGATC
GGGCACCTCGTCATCATCGATGTACGTGGCCGAACGCTTCGAGGTGCCTG
GTGCATCCTCCTGAATAAAGTCACGGTGCTCCTTCAAGAACTGCCTCAAA
TCGGGAAGAATATTCTCCAGCTTCGGCTCTGCGCTGCGCCACACTTCCTC
ACCAGTACGGGGATCGATCACGCATATGTAAGGCAGGGTGGCGCAGTGGT
AGAAGGCCACAAAGCGGCGTCCTTCCGAGGTGTCGTTGTCCACCTGCCAG
AAGGTGAACTGGCGACGTATCAGTTTCTTAAGCTCCCTGTC
BS08729.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8892-PC | 1491 | CG8892-RC | 672..1491 | 836..17 | 4100 | 100 | Minus |
| CG8892-PB | 1491 | CG8892-RB | 672..1491 | 836..17 | 4100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8892-RD | 1952 | CG8892-RD | 981..1813 | 841..9 | 4135 | 99.8 | Minus |
| CG8892-RE | 2075 | CG8892-RE | 1080..1912 | 841..9 | 4135 | 99.8 | Minus |
| CG8892-RB | 1775 | CG8892-RB | 804..1636 | 841..9 | 4135 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4979676..4980508 | 9..841 | 4135 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:52:15 has no hits.
BS08729.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:27 Download gff for
BS08729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-PB | 667..1491 | 17..841 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:46 Download gff for
BS08729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-PB | 667..1491 | 17..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:27:01 Download gff for
BS08729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 804..1644 | 1..841 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:19:52 Download gff for
BS08729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 804..1644 | 1..841 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:19:52 Download gff for
BS08729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4979668..4980508 | 1..841 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:27:01 Download gff for
BS08729.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4979668..4980508 | 1..841 | 99 | | Plus |
BS08729.5prime Sequence
883 bp (810 high quality bases) assembled on 2006-01-11
> BS08729.5prime
GAAGTTATCAGTCGACATGTCCACTACCGAGGCGCCGGATGCGCTGGTGG
AGCAGGTCCGCGAGGTGACCGCTTGCTCCATGGACGAGGCCAAATATTAC
TTGTCTGCCTGTGCCAACGATGTGTCCGCCGCAGTGGCTCTGTTTTTCGA
ACAGGCAGCCTCCACATCCACGCCATCGGGCTCCAGTGCCGGTGCTGCGG
CTGAATCGCTACCCGTTTTGGACGACGAGGATGAGGTAAGGGCGCCAATT
GCCCCGGTCCGTGAGCAATTGATCCTGCCCGAGGACGACAATTTTTTTGC
GTCGGGGAGCAGTAGCCGGCTGTCGCGTGTGACGCAGCGCGTCAAGGTTC
ATCCCCTGCGGGACTTTGCCCGCGAGGGCGCTCTAATGGAGGAGCAGCTG
CAGGCCACTGGCGTCTATGCCGATCCCAATCGAATCCGTCGCGGACGGGC
CGCCCAGATGGTGGTGGCCGGTCAGGCCATGGCACTTAACAGACGGTCCA
CAACGGACACGGCAACCAGCACATCCCGCCTCGGAGACCTATTCCGCCCG
CCAACGGACATACTCTACTCCGGATCACTAACCGCTGCCAGGGAGTTTGC
CACCAAGCGTCAGCGCTGGTTGCTGGTCAACGTGCAGGACGAAAACTTTC
AGTCGCAGACTTTGAACCGCGATGTCTGGTCGGACAAGGAGCTTAAGAAA
CTGATACGTCGCCAGTTCACCTTCTGGCAGGTGGACAACGACACCTCGGA
AGGACGCCGCTTTGTGGCCTTCTACCACTGCGCCACCCTGCCTTACATAT
GCGTGATCGATCCCCGTACTGGTGAGGAAGTGTGGCGCAGCGCAGAGCCG
AAGCTGGAGAATATTCTTCCCGATTTGAGGCAG
BS08729.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8892-PC | 1491 | CG8892-RC | 1..867 | 17..883 | 4335 | 100 | Plus |
| CG8892-PB | 1491 | CG8892-RB | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8892-RD | 1952 | CG8892-RD | 314..1181 | 16..883 | 4340 | 100 | Plus |
| CG8892-RE | 2075 | CG8892-RE | 413..1280 | 16..883 | 4340 | 100 | Plus |
| CG8892-RB | 1775 | CG8892-RB | 137..1004 | 16..883 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4980308..4981175 | 883..16 | 4340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:34:48 has no hits.
BS08729.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:28 Download gff for
BS08729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-PB | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:50:47 Download gff for
BS08729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-PB | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:09:43 Download gff for
BS08729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 131..1004 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:17 Download gff for
BS08729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 131..1004 | 9..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:17 Download gff for
BS08729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4980308..4981181 | 9..883 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:09:43 Download gff for
BS08729.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4980308..4981181 | 9..883 | 99 | | Minus |
BS08729.complete Sequence
1523 bp (1523 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636250
> BS08729.complete
GAAGTTATCAGTCGACATGTCCACTACCGAGGCGCCGGATGCGCTGGTGG
AGCAGGTCCGCGAGGTGACCGCTTGCTCCATGGACGAGGCCAAATATTAC
TTGTCTGCCTGTGCCAACGATGTGTCCGCCGCAGTGGCTCTGTTTTTCGA
ACAGGCAGCCTCCACATCCACGCCATCGGGCTCCAGTGCCGGTGCTGCGG
CTGAATCGCTACCCGTTTTGGACGACGAGGATGAGGTAAGGGCGCCAATT
GCCCCGGTCCGTGAGCAATTGATCCTGCCCGAGGACGACAATTTTTTTGC
GTCGGGGAGCAGTAGCCGGCTGTCGCGTGTGACGCAGCGCGTCAAGGTTC
ATCCCCTGCGGGACTTTGCCCGCGAGGGCGCTCTAATGGAGGAGCAGCTG
CAGGCCACTGGCGTCTATGCCGATCCCAATCGAATCCGTCGCGGACGGGC
CGCCCAGATGGTGGTGGCCGGTCAGGCCATGGCACTTAACAGACGGTCCA
CAACGGACACGGCAACCAGCACATCCCGCCTCGGAGACCTATTCCGCCCG
CCAACGGACATACTCTACTCCGGATCACTAACCGCTGCCAGGGAGTTTGC
CACCAAGCGTCAGCGCTGGTTGCTGGTCAACGTGCAGGACGAAAACTTTC
AGTCGCAGACTTTGAACCGCGATGTCTGGTCGGACAAGGAGCTTAAGAAA
CTGATACGTCGCCAGTTCACCTTCTGGCAGGTGGACAACGACACCTCGGA
AGGACGCCGCTTTGTGGCCTTCTACCACTGCGCCACCCTGCCTTACATAT
GCGTGATCGATCCCCGTACTGGTGAGGAAGTGTGGCGCAGCGCAGAGCCG
AAGCTGGAGAATATTCTTCCCGATTTGAGGCAGTTCTTGAAGGAGCACCG
TGACTTTATTCAGGAGGATGCACCAGGCACCTCGAAGCGTTCGGCCACGT
ACATCGATGATGACGAGGTGCCCGATCCGGAGGCCTCGTGCTCCTCGACA
GCCAGTTCGAAGGAAATGCCCAAGAAACGTGCCAAGGTTCTGGAGCTAAC
CGAAGAGGAGCAGCTTGAGTTGGCCATCAAGAATTCCATAAACGAGAACG
GTGGTGGCGGAGGCGAAGGCAACCAGAAAAACGATAGTCCCGATGGAGCC
AGCGATAATGAGAGCCTTGAGGAGTTCGATGATGAGGAGCTCAAGGGTGT
GGCCGCCGCCTCTTTCGAGAATCACTTGGGCGAGGCCAAGACTGAATTGA
CTGCCCTTAAACTGCGCCTGCTCAACGCCGCCGGAACAGATGAGATGGTC
CAGCTGCGCTGGCCCTCGGACACCAAACTGCAAACTTTGCGGCTGTACAT
CAGCCAGACGCACAAGCACATCCCTCAGGACGGCTACAAGCTCATTTGCG
CCTTCCCGCGAAAATTCCTGGAGGCGGAGCATAACGATAGCTCCCTGAAG
GAACTCGGCCTGCATCCATCGGCAAATCTGCATCTCACAAACGCGGACGA
TCAGTAGAAGCTTTCTAGACCAT
BS08729.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8892-RD | 1491 | CG8892-PD | 1..1491 | 17..1507 | 7455 | 100 | Plus |
| CG8892-RE | 1491 | CG8892-PE | 1..1491 | 17..1507 | 7455 | 100 | Plus |
| CG8892-RB | 1491 | CG8892-PB | 1..1491 | 17..1507 | 7455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8892-RD | 1952 | CG8892-RD | 314..1813 | 16..1515 | 7485 | 99.9 | Plus |
| CG8892-RE | 2075 | CG8892-RE | 413..1912 | 16..1515 | 7485 | 99.9 | Plus |
| CG8892-RB | 1775 | CG8892-RB | 137..1636 | 16..1515 | 7485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4979676..4981175 | 1515..16 | 7485 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:13:58 has no hits.
BS08729.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:47 Download gff for
BS08729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 1..1491 | 17..1507 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:21 Download gff for
BS08729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 195..1708 | 9..1523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:08:59 Download gff for
BS08729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 138..1628 | 17..1507 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:48 Download gff for
BS08729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 195..1708 | 9..1523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:13:38 Download gff for
BS08729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 138..1628 | 17..1507 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:13:38 Download gff for
BS08729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4979684..4981174 | 17..1507 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:59 Download gff for
BS08729.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4979684..4981174 | 17..1507 | 100 | | Minus |
BS08729.pep Sequence
Translation from 16 to 1506
> BS08729.pep
MSTTEAPDALVEQVREVTACSMDEAKYYLSACANDVSAAVALFFEQAAST
STPSGSSAGAAAESLPVLDDEDEVRAPIAPVREQLILPEDDNFFASGSSS
RLSRVTQRVKVHPLRDFAREGALMEEQLQATGVYADPNRIRRGRAAQMVV
AGQAMALNRRSTTDTATSTSRLGDLFRPPTDILYSGSLTAAREFATKRQR
WLLVNVQDENFQSQTLNRDVWSDKELKKLIRRQFTFWQVDNDTSEGRRFV
AFYHCATLPYICVIDPRTGEEVWRSAEPKLENILPDLRQFLKEHRDFIQE
DAPGTSKRSATYIDDDEVPDPEASCSSTASSKEMPKKRAKVLELTEEEQL
ELAIKNSINENGGGGGEGNQKNDSPDGASDNESLEEFDDEELKGVAAASF
ENHLGEAKTELTALKLRLLNAAGTDEMVQLRWPSDTKLQTLRLYISQTHK
HIPQDGYKLICAFPRKFLEAEHNDSSLKELGLHPSANLHLTNADDQ*
BS08729.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8892-PD | 496 | CG8892-PD | 1..496 | 1..496 | 2542 | 100 | Plus |
| CG8892-PE | 496 | CG8892-PE | 1..496 | 1..496 | 2542 | 100 | Plus |
| CG8892-PB | 496 | CG8892-PB | 1..496 | 1..496 | 2542 | 100 | Plus |
| CG8892-PC | 496 | CG8892-PC | 1..496 | 1..496 | 2542 | 100 | Plus |
