Clone Sequence Records
BS08736.3prime Sequence
934 bp (817 high quality bases) assembled on 2006-01-11
> BS08736.3prime
ATGGTCTAGAAAGCTTTCACTTGCGGTGCAGACCACCACCTGGACGAATT
ACTGCAGCGGCTGCCTTTTTGACCTCATCAATTGCATGCATCATGCGCTG
CGGCTCAGTGAGAAACCAAATCCACAGGACTACGCTATAGCGATACAGTT
TATCCCGCTCAATGCGCCCCACGACATTTTCCAGGAAATCTTTTCGCAAG
GAACGCCCTGACTCATCCAGGCGAGTTTGCTGCTGGGTGACATTGTATAT
GGCGCTCAAGTAGCGAACGTTCTCAAACATGGGCTGCTCCAATGGGGAAT
CATAGACAAACGGCCGCAAAGTCTGCTCCAAGCGCTTGAGTTCTGCCAGT
TGATCCTGAACAGCAGCACACGACTTTCGGTTCAGCATGCTCTGAAAGGA
GTAAGACAGCAGGCGACCGAACTTTTCGTATTCGAAGAGACAAGCCTTGG
CCTCAGTTGCCTTTATGTTCTGTCCCAAGTGGGCTGACAACAAATTGGCA
ATCTCCTGCACAAACTGGGCACAAATGCCCTGATAACTGGCGTTAATGGA
GCGCATGGTCTGGATTCTTTGCCAAGTGGCCTGCGCTTGGTCGCGCAACT
CCTCCGAAGTGTCCAGGCAGTTGCGCTTCTTGTCGCAGTCCAGTTGGATC
GCAATCCACAGCAATTCCGCATTGGACAGAGCATCTGAGATGATTTTAGT
GAGCTTCTTGTCGCTTTCATGACGTCGAACAGCTCTTTCCAACTTCAGTT
TAGTGTTCTCGTAGAGAACCAGCTCAATACGTCGCTGGGTGTGCTGCTGA
ATGTGAATGGTTAGATCGTTTAAAAGCGTATCGTGTGTATTGCTCAGTTG
ATAGTCGTTGAGCACCTGCAGATCGTGCATTTCACGCGCCATGTCCCGTA
AACTGAGGCAGTGAATCTTGCCAAGATCCAACTG
BS08736.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3221-PA | 1614 | CG3221-RA | 697..1614 | 934..17 | 4515 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt3-RB | 1809 | CG3221-RB | 839..1757 | 934..16 | 4550 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20992774..20993369 | 339..934 | 2935 | 99.5 | Plus |
| 2R | 25286936 | 2R | 20992536..20992714 | 160..338 | 895 | 100 | Plus |
| 2R | 25286936 | 2R | 20992328..20992472 | 16..160 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:20:23 has no hits.
BS08736.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:43 Download gff for
BS08736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3221-PA | 697..1614 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:08 Download gff for
BS08736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3221-PA | 697..1614 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:33:54 Download gff for
BS08736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt3-RB | 839..1760 | 11..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:36:33 Download gff for
BS08736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt3-RB | 839..1760 | 11..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:36:33 Download gff for
BS08736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20992325..20992472 | 11..160 | 98 | <- | Plus |
| 2R | 20992537..20992714 | 161..338 | 100 | <- | Plus |
| 2R | 20992774..20993369 | 339..934 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:33:54 Download gff for
BS08736.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16879830..16879977 | 11..160 | 98 | <- | Plus |
| arm_2R | 16880042..16880219 | 161..338 | 100 | <- | Plus |
| arm_2R | 16880279..16880874 | 339..934 | 99 | | Plus |
BS08736.5prime Sequence
886 bp (823 high quality bases) assembled on 2006-01-11
> BS08736.5prime
GAAGTTATCAGTCGACATGGAGATGTTCTTCAAGTTCCTGTCCGGGAACA
TCACGGATGCAAATATCCTCACAGAGCGACAGGTTCTGGAGCGGGAGGAG
ATGCAGCGGCGGGGCGAGTGGCTAAGTGCTTCGGATCGCGAGCTCAAGCT
CCTGCAAATCGAGGCCGAAAGTCCGGGGCTTCTCAACTACAAGCAGCAGG
ATGTCGACGCCTTGACCATGAGCATTGAGGCGATCGAAGATGCCTCAAGG
GATTATGCTACGCTTCTGGAAGATATGATGACCACAAAGCACTCGATAAC
TAAGCACCTAGGCGAGGTGGAGTGCGTCACCGCCGAGTTGCAACTGAGGG
AGAAGGATCTGATAGCCGAGTGCCAGTCCAAAGCCAAGCAACTGGAGGAA
CTGCAGCAGGAGAACTGCCGGCTAAGCGCCGAAGCCAAAAAGGCATTCAC
CGCCCCACAGTTGCCGCCTCTATTCATGCATCAACTGCCATTGGAGCAGT
ATTTCCACAAATGCGATTCATTTATGCAATACTTTACTCTGTATGTGAAG
GAGAATTTTAAGATCCAGGACTATGATGAGTTCCAGAGCGCGGAGGAAGA
TCTTGGGCGCGAAAAGGCCAAGCTGGAGGACTTGGAACGTGGCATCCAGT
TTTATGCACTATCCTACATAAGAACAAAGGCCAAGGTGAAGGCCACGCAG
TGTCTTATTGACCAGTTGGATCTTGGCAAGATTCACTGCCTCAGTTTAAC
GGACATGGCGCGTGAAATGCACGATCTGCAGCTGCTCAACGACTATCAAC
TGAGCAATACACACGATACGCTTTTAAACGATCTAACCATTCACATTCAG
CAGCACACCCAGCGACGTATTGAGCTGGTTCTCTAC
BS08736.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3221-PA | 1614 | CG3221-RA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt3-RB | 1809 | CG3221-RB | 143..1012 | 17..886 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20993501..20993863 | 642..280 | 1815 | 100 | Minus |
| 2R | 25286936 | 2R | 20993925..20994188 | 280..17 | 1320 | 100 | Minus |
| 2R | 25286936 | 2R | 20993196..20993440 | 886..642 | 1225 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 10:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 992..1031 | 426..387 | 110 | 75 | Minus |
| X-element | 4740 | X-element ROXELEMENT 4740bp | 2721..2766 | 205..158 | 109 | 72.9 | Minus |
BS08736.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:44 Download gff for
BS08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3221-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:09 Download gff for
BS08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3221-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:58:33 Download gff for
BS08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt3-RB | 135..1012 | 7..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:51 Download gff for
BS08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt3-RB | 135..1012 | 7..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:51 Download gff for
BS08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20993501..20993863 | 280..642 | 100 | <- | Minus |
| 2R | 20993196..20993439 | 643..886 | 100 | <- | Minus |
| 2R | 20993926..20994196 | 7..279 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:58:33 Download gff for
BS08736.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16880701..16880944 | 643..886 | 100 | <- | Minus |
| arm_2R | 16881006..16881368 | 280..642 | 100 | <- | Minus |
| arm_2R | 16881431..16881701 | 7..279 | 98 | | Minus |
BS08736.complete Sequence
1646 bp (1646 high quality bases) assembled on 2006-01-25
> BS08736.complete
GAAGTTATCAGTCGACATGGAGATGTTCTTCAAGTTCCTGTCCGGGAACA
TCACGGATGCAAATATCCTCACAGAGCGACAGGTTCTGGAGCGGGAGGAG
ATGCAGCGGCGGGGCGAGTGGCTAAGTGCTTCGGATCGCGAGCTCAAGCT
CCTGCAAATCGAGGCCGAAAGTCCGGGGCTTCTCAACTACAAGCAGCAGG
ATGTCGACGCCTTGACCATGAGCATTGAGGCGATCGAAGATGCCTCAAGG
GATTATGCTACGCTTCTGGAAGATATGATGACCACAAAGCACTCGATAAC
TAAGCACCTAGGCGAGGTGGAGTGCGTCACCGCCGAGTTGCAACTGAGGG
AGAAGGATCTGATAGCCGAGTGCCAGTCCAAAGCCAAGCAACTGGAGGAA
CTGCAGCAGGAGAACTGCCGGCTAAGCGCCGAAGCCAAAAAGGCATTCAC
CGCCCCACAGTTGCCGCCTCTATTCATGCATCAACTGCCATTGGAGCAGT
ATTTCCACAAATGCGATTCATTTATGCAATACTTTACTCTGTATGTGAAG
GAGAATTTTAAGATCCAGGACTATGATGAGTTCCAGAGCGCGGAGGAAGA
TCTTGGGCGCGAAAAGGCCAAGCTGGAGGACTTGGAACGTGGCATCCAGT
TTTATGCACTATCCTACATAAGAACAAAGGCCAAGGTGAAGGCCACGCAG
TGTCTTATTGACCAGTTGGATCTTGGCAAGATTCACTGCCTCAGTTTAAC
GGACATGGCGCGTGAAATGCACGATCTGCAGCTGCTCAACGACTATCAAC
TGAGCAATACACACGATACGCTTTTAAACGATCTAACCATTCACATTCAG
CAGCACACCCAGCGACGTATTGAGCTGGTTCTCTACGAGAACACTAAACT
GAAGTTGGAAAGAGCTGTTCGACGTCATGAAAGCGACAAGAAGCTCACTA
AAATCATCTCAGATGCTCTGTCCAATGCGGAATTGCTGTGGATTGCGATC
CAACTGGACTGCGACAAGAAGCGCAACTGCCTGGACACTTCGGAGGAGTT
GCGCGACCAAGCGCAGGCCACTTGGCAAAGAATCCAGACCATGCGCTCCA
TTAACGCCAGTTATCAGGGCATTTGTGCCCAGTTTGTGCAGGAGATTGCC
AATTTGTTGTCAGCCCACTTGGGACAGAACATAAAGGCAACTGAGGCCAA
GGCTTGTCTCTTCGAATACGAAAAGTTCGGTCGCCTGCTGTCTTACTCCT
TTCAGAGCATGCTGAACCGAAAGTCGTGTGCTGCTGTTCAGGATCAACTG
GCAGAACTCAAGCGCTTGGAGCAGACTTTGCGGCCGTTTGTCTATGATTC
CCCATTGGAGCAGCCCATGTTTGAGAACGTTCGCTACTTGAGCGCCATAT
ACAATGTCACCCAGCAGCAAACTCGCCTGGATGAGTCAGGGCGTTCCTTG
CGAAAAGATTTCCTGGAAAATGTCGTGGGGCGCATTGAGCGGGATAAACT
GTATCGCTATAGCGTAGTCCTGTGGATTTGGTTTCTCACTGAGCCGCAGC
GCATGATGCATGCAATTGATGAGGTCAAAAAGGCAGCCGCTGCAGTAATT
CGTCCAGGTGGTGGTCTGCACCGCAAGTGAAAGCTTTCTAGACCAT
BS08736.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:26:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt3-RB | 1698 | CG3221-PB | 85..1698 | 17..1630 | 8070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt3-RB | 1809 | CG3221-RB | 143..1757 | 17..1631 | 8075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:26:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20992774..20993440 | 1308..642 | 3335 | 100 | Minus |
| 2R | 25286936 | 2R | 20993501..20993863 | 642..280 | 1815 | 100 | Minus |
| 2R | 25286936 | 2R | 20993925..20994188 | 280..17 | 1320 | 100 | Minus |
| 2R | 25286936 | 2R | 20992536..20992714 | 1487..1309 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 20992328..20992472 | 1631..1487 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:26:34 has no hits.
BS08736.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:33 Download gff for
BS08736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt3-RB | 77..1698 | 7..1630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:57 Download gff for
BS08736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt3-RB | 90..1715 | 7..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:57 Download gff for
BS08736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt3-RB | 143..1755 | 17..1629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:33 Download gff for
BS08736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt3-RB | 90..1715 | 7..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:35 Download gff for
BS08736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt3-RB | 143..1755 | 17..1629 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:35 Download gff for
BS08736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20992330..20992472 | 1487..1629 | 100 | <- | Minus |
| 2R | 20992537..20992714 | 1309..1486 | 100 | <- | Minus |
| 2R | 20992774..20993439 | 643..1308 | 100 | <- | Minus |
| 2R | 20993501..20993863 | 280..642 | 100 | <- | Minus |
| 2R | 20993926..20994188 | 17..279 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:57 Download gff for
BS08736.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16879835..16879977 | 1487..1629 | 100 | <- | Minus |
| arm_2R | 16880042..16880219 | 1309..1486 | 100 | <- | Minus |
| arm_2R | 16880279..16880944 | 643..1308 | 100 | <- | Minus |
| arm_2R | 16881006..16881368 | 280..642 | 100 | <- | Minus |
| arm_2R | 16881431..16881693 | 17..279 | 100 | | Minus |
BS08736.pep Sequence
Translation from 16 to 1629
> BS08736.pep
MEMFFKFLSGNITDANILTERQVLEREEMQRRGEWLSASDRELKLLQIEA
ESPGLLNYKQQDVDALTMSIEAIEDASRDYATLLEDMMTTKHSITKHLGE
VECVTAELQLREKDLIAECQSKAKQLEELQQENCRLSAEAKKAFTAPQLP
PLFMHQLPLEQYFHKCDSFMQYFTLYVKENFKIQDYDEFQSAEEDLGREK
AKLEDLERGIQFYALSYIRTKAKVKATQCLIDQLDLGKIHCLSLTDMARE
MHDLQLLNDYQLSNTHDTLLNDLTIHIQQHTQRRIELVLYENTKLKLERA
VRRHESDKKLTKIISDALSNAELLWIAIQLDCDKKRNCLDTSEELRDQAQ
ATWQRIQTMRSINASYQGICAQFVQEIANLLSAHLGQNIKATEAKACLFE
YEKFGRLLSYSFQSMLNRKSCAAVQDQLAELKRLEQTLRPFVYDSPLEQP
MFENVRYLSAIYNVTQQQTRLDESGRSLRKDFLENVVGRIERDKLYRYSV
VLWIWFLTEPQRMMHAIDEVKKAAAAVIRPGGGLHRK*
BS08736.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt3-PB | 565 | CG3221-PB | 29..565 | 1..537 | 2747 | 100 | Plus |
