Clone BS08738 Report

Search the DGRC for BS08738

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG6506-RA
Protein status:BS08738.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08738.3prime Sequence

726 bp (724 high quality bases) assembled on 2006-01-11

> BS08738.3prime
ATGGTCTAGAAAGCTTTTACGTTTCAAAAGTGGCGTGAAAGTTGCTAATC
GTGGCCCCATTGCCATTTCCATTGCCGCCCGTGCTGCCATTGCCGCTCGT
CCCCGTCATGTTGGAGGTATTGGACGATATCTGGCCATCGAGCAGGCCGT
ACAGCATCTGCTGGGAGCTGACTGTGCCACTGGAGCCCGTGCTACCGCCC
AGATCCTGCAGCATATCGCCCATGGCCATGCCGCCTATGCTCTGGCTGCT
GCCTGTGGCGCTGTTGTCCAGGATGTTGAGAAAGTCGTGGCCGTTGAACT
CGTTGTGCTGCTTCTGCATGCTGCTCTGGCTCTCCTTCATCAGTTTGTCG
TACTCCTGCAGTACGCTGTTGAACTCAGCGATCTCCGCGCGATTCCTGGC
CAGCACCTTGTGCTTGTAGTAGTTGTGCACCTGGGTGAGCGAGGTGCCCG
TTTGGGCGAAATGGGCGCGCTCCAGTGGGACCAGCTGCAGCACCGTGGAA
TTCTGCAGCCGCGGCTGACTGTCATAGTAGCCGCGATACTCGCCGATAAA
GCTGCGCAGGAACTCCTCGGTGGCGTCCGTCAGCAGTTGCACCGCCGACT
CGGAACAGTCGGTGAAGCCGGCCAGGCGCAGCATGCCGCACATCACCTTG
CGCATCGCCTGGCGGCAAGCAAAGCTGGGGATCTCCGGATATGCCTCCGG
ATCCCCGCGAGAGTAGGCTGTGTCCA

BS08738.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-PA 1080 CG6506-RA 371..1080 726..17 3525 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-RA 1309 CG6506-RA 452..1161 726..17 3535 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17851032..17851741 726..17 3535 99.9 Minus
Blast to na_te.dros performed on 2015-02-01 06:56:44 has no hits.

BS08738.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:47 Download gff for BS08738.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-PA 372..1080 17..725 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:13 Download gff for BS08738.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-PA 372..1080 17..725 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:09:05 Download gff for BS08738.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 453..1166 11..725 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:39:29 Download gff for BS08738.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 453..1166 11..725 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:39:29 Download gff for BS08738.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17851033..17851746 11..725 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:09:05 Download gff for BS08738.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17745066..17745779 11..725 99   Minus

BS08738.5prime Sequence

758 bp (700 high quality bases) assembled on 2006-01-11

> BS08738.5prime
GAAGTTATCAGTCGACATGCAAACAGAGCACTGGGGCTCGCTGCCCGCAG
AGGATGACGGCGGTCAACTGACGCCGGACAAATACGTGCCCACGGCGGCC
AAGAAACTTAAGCTGGACGAGATTCGCCAGCGCGGAGATCCGCAACCGCA
AGAAAAGCACCACAAGTTGGAGCTGAGGAGTGCGCTGGTCACCCAGACCA
TCGAGGTGATGAAGCAAACCGAGGTGCTGCAGTCCCTCATTGAAACGTAC
TCCAACAAAAATGGAAGTTCCAATTACCTCTTGAATCCGTGCCTAATGAT
ACCGGAAGTGGACTTTCCGCCGGAGAACGCAGCCGAACTGGTGGGCAGCC
AAAAGTTTCAGAAGCCCATTTGGTTCACACCAACCGTGGACACAGCCTAC
TCTCGCGGGGATCCGGAGGCATATCCGGAGATCCCCAGCTCTGCTTGCCG
CCAGGCGATGCGCAAGGTGATGTGCGGCATGCTGCGCCTGGCCGGCTTCA
CCGACTGTTCCGAGTCGGCGGTGCAACTGCTGACGGACGCCACCGAGGAG
TTCCTGCGCAGCTTTATCGGCGAGTATCGCGGCTACTATGACAGTCAGCC
GCGGCTGCAGAATTCCACGGTGCTGCAGCTGGTCCCACTGGAGCGCGCCC
ATTTCGCCCAAACGGGCACCTCGCTCACCCAGGTGCACAACTACTACAAG
CACAAGGTGCTGGCCAGGAATCGCGCGGAGATCGCTGAGTTCAACAGCGT
ACTGCAGG

BS08738.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-PA 1080 CG6506-RA 1..742 17..758 3710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:30:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-RA 1309 CG6506-RA 80..823 15..758 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:30:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17850908..17851403 263..758 2480 100 Plus
X 23542271 X 17850539..17850683 15..159 725 100 Plus
X 23542271 X 17850745..17850855 160..270 540 99.1 Plus
Blast to na_te.dros performed on 2015-02-02 09:30:37 has no hits.

BS08738.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:48 Download gff for BS08738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-PA 1..742 17..758 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:14 Download gff for BS08738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-PA 1..742 17..758 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:23:45 Download gff for BS08738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 80..823 15..758 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:31:28 Download gff for BS08738.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 80..823 15..758 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:31:28 Download gff for BS08738.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17850539..17850683 15..159 100 -> Plus
X 17850745..17850851 160..267 98 -> Plus
X 17850913..17851403 268..758 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:23:45 Download gff for BS08738.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17744572..17744716 15..159 100 -> Plus
arm_X 17744778..17744884 160..267 98 -> Plus
arm_X 17744946..17745436 268..758 100   Plus

BS08738.complete Sequence

1112 bp (1112 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636251

> BS08738.complete
GAAGTTATCAGTCGACATGCAAACAGAGCACTGGGGCTCGCTGCCCGCAG
AGGATGACGGCGGTCAACTGACGCCGGACAAATACGTGCCCACGGCGGCC
AAGAAACTTAAGCTGGACGAGATTCGCCAGCGCGGAGATCCGCAACCGCA
AGAAAAGCACCACAAGTTGGAGCTGAGGAGTGCGCTGGTCACCCAGACCA
TCGAGGTGATGAAGCAAACCGAGGTGCTGCAGTCCCTCATTGAAACGTAC
TCCAACAAAAATGGAAGTTCCAATTACCTCTTGAATCCGTGCCTAATGAT
ACCGGAAGTGGACTTTCCGCCGGAGAACGCAGCCGAACTGGTGGGCAGCC
AAAAGTTTCAGAAGCCCATTTGGTTCACACCAACCGTGGACACAGCCTAC
TCTCGCGGGGATCCGGAGGCATATCCGGAGATCCCCAGCTCTGCTTGCCG
CCAGGCGATGCGCAAGGTGATGTGCGGCATGCTGCGCCTGGCCGGCTTCA
CCGACTGTTCCGAGTCGGCGGTGCAACTGCTGACGGACGCCACCGAGGAG
TTCCTGCGCAGCTTTATCGGCGAGTATCGCGGCTACTATGACAGTCAGCC
GCGGCTGCAGAATTCCACGGTGCTGCAGCTGGTCCCACTGGAGCGCGCCC
ATTTCGCCCAAACGGGCACCTCGCTCACCCAGGTGCACAACTACTACAAG
CACAAGGTGCTGGCCAGGAATCGCGCGGAGATCGCTGAGTTCAACAGCGT
ACTGCAGGAGTACGACAAACTGATGAAGGAGAGCCAGAGCAGCATGCAGA
AGCAGCACAACGAGTTCAACGGCCACGACTTTCTCAACATCCTGGACAAC
AGCGCCACAGGCAGCAGCCAGAGCATAGGCGGCATGGCCATGGGCGATAT
GCTGCAGGATCTGGGCGGTAGCACGGGCTCCAGTGGCACAGTCAGCTCCC
AGCAGATGCTGTACGGCCTGCTCGATGGCCAGATATCGTCCAATACCTCC
AACATGACGGGGACGAGCGGCAATGGCAGCACGGGCGGCAATGGAAATGG
CAATGGGGCCACGATTAGCAACTTTCACGCCACTTTTGAAACGTAAAAGC
TTTCTAGACCAT

BS08738.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-RA 1080 CG6506-PA 1..1080 17..1096 5400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-RA 1309 CG6506-RA 80..1161 15..1096 5410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:40:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17850908..17851741 263..1096 4170 100 Plus
X 23542271 X 17850539..17850683 15..159 725 100 Plus
X 23542271 X 17850745..17850855 160..270 540 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 19:40:19 has no hits.

BS08738.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:34 Download gff for BS08738.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 1..1080 17..1096 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:01 Download gff for BS08738.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 56..1142 15..1102 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:56 Download gff for BS08738.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 82..1159 17..1094 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:34 Download gff for BS08738.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 56..1142 15..1102 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:01 Download gff for BS08738.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 82..1159 17..1094 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:01 Download gff for BS08738.complete
Subject Subject Range Query Range Percent Splice Strand
X 17850541..17850683 17..159 100 -> Plus
X 17850745..17850851 160..267 98 -> Plus
X 17850913..17851739 268..1094 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:56 Download gff for BS08738.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17744574..17744716 17..159 100 -> Plus
arm_X 17744778..17744884 160..267 98 -> Plus
arm_X 17744946..17745772 268..1094 100   Plus

BS08738.pep Sequence

Translation from 16 to 1095

> BS08738.pep
MQTEHWGSLPAEDDGGQLTPDKYVPTAAKKLKLDEIRQRGDPQPQEKHHK
LELRSALVTQTIEVMKQTEVLQSLIETYSNKNGSSNYLLNPCLMIPEVDF
PPENAAELVGSQKFQKPIWFTPTVDTAYSRGDPEAYPEIPSSACRQAMRK
VMCGMLRLAGFTDCSESAVQLLTDATEEFLRSFIGEYRGYYDSQPRLQNS
TVLQLVPLERAHFAQTGTSLTQVHNYYKHKVLARNRAEIAEFNSVLQEYD
KLMKESQSSMQKQHNEFNGHDFLNILDNSATGSSQSIGGMAMGDMLQDLG
GSTGSSGTVSSQQMLYGLLDGQISSNTSNMTGTSGNGSTGGNGNGNGATI
SNFHATFET*

BS08738.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-PA 359 CG6506-PA 1..359 1..359 1869 100 Plus