Clone Sequence Records
BS08738.3prime Sequence
726 bp (724 high quality bases) assembled on 2006-01-11
> BS08738.3prime
ATGGTCTAGAAAGCTTTTACGTTTCAAAAGTGGCGTGAAAGTTGCTAATC
GTGGCCCCATTGCCATTTCCATTGCCGCCCGTGCTGCCATTGCCGCTCGT
CCCCGTCATGTTGGAGGTATTGGACGATATCTGGCCATCGAGCAGGCCGT
ACAGCATCTGCTGGGAGCTGACTGTGCCACTGGAGCCCGTGCTACCGCCC
AGATCCTGCAGCATATCGCCCATGGCCATGCCGCCTATGCTCTGGCTGCT
GCCTGTGGCGCTGTTGTCCAGGATGTTGAGAAAGTCGTGGCCGTTGAACT
CGTTGTGCTGCTTCTGCATGCTGCTCTGGCTCTCCTTCATCAGTTTGTCG
TACTCCTGCAGTACGCTGTTGAACTCAGCGATCTCCGCGCGATTCCTGGC
CAGCACCTTGTGCTTGTAGTAGTTGTGCACCTGGGTGAGCGAGGTGCCCG
TTTGGGCGAAATGGGCGCGCTCCAGTGGGACCAGCTGCAGCACCGTGGAA
TTCTGCAGCCGCGGCTGACTGTCATAGTAGCCGCGATACTCGCCGATAAA
GCTGCGCAGGAACTCCTCGGTGGCGTCCGTCAGCAGTTGCACCGCCGACT
CGGAACAGTCGGTGAAGCCGGCCAGGCGCAGCATGCCGCACATCACCTTG
CGCATCGCCTGGCGGCAAGCAAAGCTGGGGATCTCCGGATATGCCTCCGG
ATCCCCGCGAGAGTAGGCTGTGTCCA
BS08738.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6506-PA | 1080 | CG6506-RA | 371..1080 | 726..17 | 3525 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:56:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6506-RA | 1309 | CG6506-RA | 452..1161 | 726..17 | 3535 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17851032..17851741 | 726..17 | 3535 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-01 06:56:44 has no hits.
BS08738.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:47 Download gff for
BS08738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-PA | 372..1080 | 17..725 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:13 Download gff for
BS08738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-PA | 372..1080 | 17..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:09:05 Download gff for
BS08738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 453..1166 | 11..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:39:29 Download gff for
BS08738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 453..1166 | 11..725 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:39:29 Download gff for
BS08738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17851033..17851746 | 11..725 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:09:05 Download gff for
BS08738.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17745066..17745779 | 11..725 | 99 | | Minus |
BS08738.5prime Sequence
758 bp (700 high quality bases) assembled on 2006-01-11
> BS08738.5prime
GAAGTTATCAGTCGACATGCAAACAGAGCACTGGGGCTCGCTGCCCGCAG
AGGATGACGGCGGTCAACTGACGCCGGACAAATACGTGCCCACGGCGGCC
AAGAAACTTAAGCTGGACGAGATTCGCCAGCGCGGAGATCCGCAACCGCA
AGAAAAGCACCACAAGTTGGAGCTGAGGAGTGCGCTGGTCACCCAGACCA
TCGAGGTGATGAAGCAAACCGAGGTGCTGCAGTCCCTCATTGAAACGTAC
TCCAACAAAAATGGAAGTTCCAATTACCTCTTGAATCCGTGCCTAATGAT
ACCGGAAGTGGACTTTCCGCCGGAGAACGCAGCCGAACTGGTGGGCAGCC
AAAAGTTTCAGAAGCCCATTTGGTTCACACCAACCGTGGACACAGCCTAC
TCTCGCGGGGATCCGGAGGCATATCCGGAGATCCCCAGCTCTGCTTGCCG
CCAGGCGATGCGCAAGGTGATGTGCGGCATGCTGCGCCTGGCCGGCTTCA
CCGACTGTTCCGAGTCGGCGGTGCAACTGCTGACGGACGCCACCGAGGAG
TTCCTGCGCAGCTTTATCGGCGAGTATCGCGGCTACTATGACAGTCAGCC
GCGGCTGCAGAATTCCACGGTGCTGCAGCTGGTCCCACTGGAGCGCGCCC
ATTTCGCCCAAACGGGCACCTCGCTCACCCAGGTGCACAACTACTACAAG
CACAAGGTGCTGGCCAGGAATCGCGCGGAGATCGCTGAGTTCAACAGCGT
ACTGCAGG
BS08738.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6506-PA | 1080 | CG6506-RA | 1..742 | 17..758 | 3710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:30:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6506-RA | 1309 | CG6506-RA | 80..823 | 15..758 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:30:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17850908..17851403 | 263..758 | 2480 | 100 | Plus |
X | 23542271 | X | 17850539..17850683 | 15..159 | 725 | 100 | Plus |
X | 23542271 | X | 17850745..17850855 | 160..270 | 540 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:30:37 has no hits.
BS08738.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:48 Download gff for
BS08738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-PA | 1..742 | 17..758 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:14 Download gff for
BS08738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-PA | 1..742 | 17..758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:23:45 Download gff for
BS08738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 80..823 | 15..758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:31:28 Download gff for
BS08738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 80..823 | 15..758 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:31:28 Download gff for
BS08738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17850539..17850683 | 15..159 | 100 | -> | Plus |
X | 17850745..17850851 | 160..267 | 98 | -> | Plus |
X | 17850913..17851403 | 268..758 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:23:45 Download gff for
BS08738.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17744572..17744716 | 15..159 | 100 | -> | Plus |
arm_X | 17744778..17744884 | 160..267 | 98 | -> | Plus |
arm_X | 17744946..17745436 | 268..758 | 100 | | Plus |
BS08738.complete Sequence
1112 bp (1112 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636251
> BS08738.complete
GAAGTTATCAGTCGACATGCAAACAGAGCACTGGGGCTCGCTGCCCGCAG
AGGATGACGGCGGTCAACTGACGCCGGACAAATACGTGCCCACGGCGGCC
AAGAAACTTAAGCTGGACGAGATTCGCCAGCGCGGAGATCCGCAACCGCA
AGAAAAGCACCACAAGTTGGAGCTGAGGAGTGCGCTGGTCACCCAGACCA
TCGAGGTGATGAAGCAAACCGAGGTGCTGCAGTCCCTCATTGAAACGTAC
TCCAACAAAAATGGAAGTTCCAATTACCTCTTGAATCCGTGCCTAATGAT
ACCGGAAGTGGACTTTCCGCCGGAGAACGCAGCCGAACTGGTGGGCAGCC
AAAAGTTTCAGAAGCCCATTTGGTTCACACCAACCGTGGACACAGCCTAC
TCTCGCGGGGATCCGGAGGCATATCCGGAGATCCCCAGCTCTGCTTGCCG
CCAGGCGATGCGCAAGGTGATGTGCGGCATGCTGCGCCTGGCCGGCTTCA
CCGACTGTTCCGAGTCGGCGGTGCAACTGCTGACGGACGCCACCGAGGAG
TTCCTGCGCAGCTTTATCGGCGAGTATCGCGGCTACTATGACAGTCAGCC
GCGGCTGCAGAATTCCACGGTGCTGCAGCTGGTCCCACTGGAGCGCGCCC
ATTTCGCCCAAACGGGCACCTCGCTCACCCAGGTGCACAACTACTACAAG
CACAAGGTGCTGGCCAGGAATCGCGCGGAGATCGCTGAGTTCAACAGCGT
ACTGCAGGAGTACGACAAACTGATGAAGGAGAGCCAGAGCAGCATGCAGA
AGCAGCACAACGAGTTCAACGGCCACGACTTTCTCAACATCCTGGACAAC
AGCGCCACAGGCAGCAGCCAGAGCATAGGCGGCATGGCCATGGGCGATAT
GCTGCAGGATCTGGGCGGTAGCACGGGCTCCAGTGGCACAGTCAGCTCCC
AGCAGATGCTGTACGGCCTGCTCGATGGCCAGATATCGTCCAATACCTCC
AACATGACGGGGACGAGCGGCAATGGCAGCACGGGCGGCAATGGAAATGG
CAATGGGGCCACGATTAGCAACTTTCACGCCACTTTTGAAACGTAAAAGC
TTTCTAGACCAT
BS08738.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:40:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6506-RA | 1080 | CG6506-PA | 1..1080 | 17..1096 | 5400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:40:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6506-RA | 1309 | CG6506-RA | 80..1161 | 15..1096 | 5410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:40:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17850908..17851741 | 263..1096 | 4170 | 100 | Plus |
X | 23542271 | X | 17850539..17850683 | 15..159 | 725 | 100 | Plus |
X | 23542271 | X | 17850745..17850855 | 160..270 | 540 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:40:19 has no hits.
BS08738.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:34 Download gff for
BS08738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 1..1080 | 17..1096 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:01 Download gff for
BS08738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 56..1142 | 15..1102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:56 Download gff for
BS08738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 82..1159 | 17..1094 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:34 Download gff for
BS08738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 56..1142 | 15..1102 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:01 Download gff for
BS08738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 82..1159 | 17..1094 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:01 Download gff for
BS08738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17850541..17850683 | 17..159 | 100 | -> | Plus |
X | 17850745..17850851 | 160..267 | 98 | -> | Plus |
X | 17850913..17851739 | 268..1094 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:56 Download gff for
BS08738.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17744574..17744716 | 17..159 | 100 | -> | Plus |
arm_X | 17744778..17744884 | 160..267 | 98 | -> | Plus |
arm_X | 17744946..17745772 | 268..1094 | 100 | | Plus |
BS08738.pep Sequence
Translation from 16 to 1095
> BS08738.pep
MQTEHWGSLPAEDDGGQLTPDKYVPTAAKKLKLDEIRQRGDPQPQEKHHK
LELRSALVTQTIEVMKQTEVLQSLIETYSNKNGSSNYLLNPCLMIPEVDF
PPENAAELVGSQKFQKPIWFTPTVDTAYSRGDPEAYPEIPSSACRQAMRK
VMCGMLRLAGFTDCSESAVQLLTDATEEFLRSFIGEYRGYYDSQPRLQNS
TVLQLVPLERAHFAQTGTSLTQVHNYYKHKVLARNRAEIAEFNSVLQEYD
KLMKESQSSMQKQHNEFNGHDFLNILDNSATGSSQSIGGMAMGDMLQDLG
GSTGSSGTVSSQQMLYGLLDGQISSNTSNMTGTSGNGSTGGNGNGNGATI
SNFHATFET*
BS08738.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6506-PA | 359 | CG6506-PA | 1..359 | 1..359 | 1869 | 100 | Plus |