Clone BS08740 Report

Search the DGRC for BS08740

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptHs6st-RA
Protein status:BS08740.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08740.3prime Sequence

942 bp (854 high quality bases) assembled on 2006-01-11

> BS08740.3prime
ATGGTCTAGAAAGCTTTCAATGATCCGTGCTGAGCCCATCCTCCACGTTG
CTGTCCCAGTTGAATTCCGTGACGCCCTGCTTGAAGTAGATGTTGCCCAG
ATTGGCGTAGCGCTGCTCAAAGTTTGTGTCCTTTGCCTTCAGATGTTCGA
AACGCTGAAAGAGCAAAGTCTTGGCAAAGGCATACAGCTCAATGTCCAGA
CTGTTTAGCTTCTCGATGCGACGCTTCTGGTCGGGTCGAAGATTCTGGAC
AGCAGTCGCCGAGATTGTGGTGTTGTGCTGCTCGAAGGGAATGGCGAAAC
GCAGGTTGAAAGTCTCCTCGAAAATGTACTGGGACATCTTTTGATATTCA
GTCAGTCCAAAGTAGGCCATGGCGGCCAGATTGCGCTTTGCGCTGGCCAG
CATCACGCGATCCCGCTCATGAGCGGGCATCGAAGACTTGTTGTAGCAGC
CGACGAGGGCGAGATCGGCCAGCATGCGGGTCTGGCGGTTAGCCGCCAGA
TTGGACTCGCAGCCGGCGAACTGGTCAAGATCCACGTCCAGCCAGTCCTT
GCCCTTGTAGCAAGCGGGCAGCTCGGCGGCGGTGGCCTGGCGGCCCAGGC
ACCAATGGCGTGATCCCTTCCAGGTGGCGCCCCGCCGCACATGCCGATAC
TCGGACATGTAGCGAGCAATGGGTTGTCGCAGCAGAGAAATGTAAAAGTA
CCGCCGCTTGGCCGTCTCCCCTTCGTTCTTGTCGAGCTCCACGTCCACGC
AGCTGGTCAGCTCGGTCCAGTCGGCATGGAGGCCGCATTTCCAGCCCGTC
GAGTAACGCGAAAAGAGCCAGTTCTCATTGCGATGCGGTCGGAAGCAGTA
GCAACGCTTCCTTTGCCGCTGGCACTCACAGGGACGCTTTAAATCCAGAT
CCCTGACCAAATGGCGGCCAAACGAGGTGCCGCCCGTCTTTT

BS08740.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4451-PA 1389 Hs6st-RA 464..1389 942..17 4605 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Hs6st-RB 3100 CG4451-RB 1055..1981 942..16 4620 99.9 Minus
Hs6st-RA 2657 CG4451-RA 1055..1981 942..16 4620 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19937502..19938052 338..888 2740 99.8 Plus
3R 32079331 3R 19937254..19937440 153..339 935 100 Plus
3R 32079331 3R 19930396..19930533 16..153 690 100 Plus
3R 32079331 3R 19938124..19938179 887..942 280 100 Plus
Blast to na_te.dros performed on 2015-02-08 14:07:54 has no hits.

BS08740.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:51 Download gff for BS08740.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs6st-PA 464..1389 17..942 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:19 Download gff for BS08740.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4451-PA 464..1389 17..942 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:44 Download gff for BS08740.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 1055..1983 12..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:33:47 Download gff for BS08740.3prime
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 1055..1983 12..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:33:47 Download gff for BS08740.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19930394..19930532 12..152 98 <- Plus
3R 19937254..19937438 153..337 100 <- Plus
3R 19937502..19938050 338..886 99 <- Plus
3R 19938124..19938179 887..942 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:44 Download gff for BS08740.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15756116..15756254 12..152 98 <- Plus
arm_3R 15762976..15763160 153..337 100 <- Plus
arm_3R 15763224..15763772 338..886 99 <- Plus
arm_3R 15763846..15763901 887..942 100   Plus

BS08740.5prime Sequence

843 bp (786 high quality bases) assembled on 2006-01-11

> BS08740.5prime
GAAGTTATCAGTCGACATGCCCGGGGATATGCATAAGAACGTATCTGTTC
AAGTCGATAGTGATTTTGCCTTATTGCTGCCCAGTGGTGTTTATGAAATC
AAGAAAATGGAACCGCGCTCCAAAATCCGAACAATCATTGTGTTTTGCCT
CTTCCTGGCCATCGCCGGCATCATCGGATTTGGATACTTTTGTCAAGATC
AGGTATGCGCCCTATCCAAACGTGCCGTCATACTGCAGTCTTCGGATATC
CTCGCTTATAATGAGCTCCCACTCCATCAGGCCAACAGCATTAATGGCAA
TGCGAACGGCAATAGCAATGGCAACGGCAACAGTGTGGGCGGAATCACGG
CCATGGCCTCCAAGTCCTCCGCACCGCAGAACATCATCGCCAATGCAGGG
TTGAGTTACGAGGATGTACTAAACGATGATTTCCAGTTCGACATGGATGG
CCATGACGTGATGGTCTTTCTGCACATCCAAAAGACGGGCGGCACCTCGT
TTGGCCGCCATTTGGTCAGGGATCTGGATTTAAAGCGTCCCTGTGAGTGC
CAGCGGCAAAGGAAGCGTTGCTACTGCTTCCGACCGCATCGCAATGAGAA
CTGGCTCTTTTCGCGCTACTCGACGGGCTGGAAATGCGGCCTCCATGCCG
ACTGGACCGAGCTGACCAGCTGCGTGGACGTGGAGCTCGACAAGAACGAA
GGGGAGACGGCCAAGCGGCGGTACTTTTACATTTCTCTGCTGCGACAACC
CATTGCTCGCTACATGTCCGAGTATCGGCATGTGCGGCGGGGCGCCACCT
GGAAGGGATCACGCCATTGGTGCCTGGGCCGCCAGGCCACCGC

BS08740.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4451-PA 1389 Hs6st-RA 1..827 17..843 4135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Hs6st-RB 3100 CG4451-RB 590..1418 15..843 4145 100 Plus
Hs6st-RA 2657 CG4451-RA 590..1418 15..843 4145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19938124..19938459 535..200 1680 100 Minus
3R 32079331 3R 19937743..19938052 843..534 1550 100 Minus
3R 32079331 3R 20006232..20006422 205..15 955 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:34:26 has no hits.

BS08740.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:52 Download gff for BS08740.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs6st-PA 1..827 17..843 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:20 Download gff for BS08740.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4451-PA 1..827 17..843 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:09:41 Download gff for BS08740.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 590..1418 15..843 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:33 Download gff for BS08740.5prime
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 590..1418 15..843 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:33 Download gff for BS08740.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19937743..19938050 536..843 100 <- Minus
3R 19938124..19938456 203..535 100 <- Minus
3R 20006235..20006422 15..202 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:09:41 Download gff for BS08740.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15763465..15763772 536..843 100 <- Minus
arm_3R 15763846..15764178 203..535 100 <- Minus
arm_3R 15831957..15832144 15..202 100   Minus

BS08740.complete Sequence

1421 bp (1421 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636252

> BS08740.complete
GAAGTTATCAGTCGACATGCCCGGGGATATGCATAAGAACGTATCTGTTC
AAGTCGATAGTGATTTTGCCTTATTGCTGCCCAGTGGTGTTTATGAAATC
AAGAAAATGGAACCGCGCTCCAAAATCCGAACAATCATTGTGTTTTGCCT
CTTCCTGGCCATCGCCGGCATCATCGGATTTGGATACTTTTGTCAAGATC
AGGTATGCGCCCTATCCAAACGTGCCGTCATACTGCAGTCTTCGGATATC
CTCGCTTATAATGAGCTCCCACTCCATCAGGCCAACAGCATTAATGGCAA
TGCGAACGGCAATAGCAATGGCAACGGCAACAGTGTGGGCGGAATCACGG
CCATGGCCTCCAAGTCCTCCGCACCGCAGAACATCATCGCCAATGCAGGG
TTGAGTTACGAGGATGTACTAAACGATGATTTCCAGTTCGACATGGATGG
CCATGACGTGATGGTCTTTCTGCACATCCAAAAGACGGGCGGCACCTCGT
TTGGCCGCCATTTGGTCAGGGATCTGGATTTAAAGCGTCCCTGTGAGTGC
CAGCGGCAAAGGAAGCGTTGCTACTGCTTCCGACCGCATCGCAATGAGAA
CTGGCTCTTTTCGCGCTACTCGACGGGCTGGAAATGCGGCCTCCATGCCG
ACTGGACCGAGCTGACCAGCTGCGTGGACGTGGAGCTCGACAAGAACGAA
GGGGAGACGGCCAAGCGGCGGTACTTTTACATTTCTCTGCTGCGACAACC
CATTGCTCGCTACATGTCCGAGTATCGGCATGTGCGGCGGGGCGCCACCT
GGAAGGGATCACGCCATTGGTGCCTGGGCCGCCAGGCCACCGCCGCCGAG
CTGCCCGCTTGCTACAAGGGCAAGGACTGGCTGGACGTGGATCTTGACCA
GTTCGCCGGCTGCGAGTCCAATCTGGCGGCTAACCGCCAGACCCGCATGC
TGGCCGATCTCGCCCTCGTCGGCTGCTACAACAAGTCTTCGATGCCCGCT
CATGAGCGGGATCGCGTGATGCTGGCCAGCGCAAAGCGCAATCTGGCCGC
CATGGCCTACTTTGGACTGACTGAATATCAAAAGATGTCCCAGTACATTT
TCGAGGAGACTTTCAACCTGCGTTTCGCCATTCCCTTCGAGCAGCACAAC
ACCACAATCTCGGCGACTGCTGTCCAGAATCTTCGACCCGACCAGAAGCG
TCGCATCGAGAAGCTAAACAGTCTGGACATTGAGCTGTATGCCTTTGCCA
AGACTTTGCTCTTTCAGCGTTTCGAACATCTGAAGGCAAAGGACACAAAC
TTTGAGCAGCGCTACGCCAATCTGGGCAACATCTACTTCAAGCAGGGCGT
CACGGAATTCAACTGGGACAGCAACGTGGAGGATGGGCTCAGCACGGATC
ATTGAAAGCTTTCTAGACCAT

BS08740.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
Hs6st-RB 1389 CG4451-PB 1..1389 17..1405 6945 100 Plus
Hs6st-RA 1389 CG4451-PA 1..1389 17..1405 6945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Hs6st-RB 3100 CG4451-RB 590..1981 15..1406 6960 100 Plus
Hs6st-RA 2657 CG4451-RA 590..1981 15..1406 6960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19937502..19938052 1084..534 2755 100 Minus
3R 32079331 3R 19938124..19938459 535..200 1680 100 Minus
3R 32079331 3R 20006232..20006422 205..15 955 100 Minus
3R 32079331 3R 19937254..19937440 1269..1083 935 100 Minus
3R 32079331 3R 19930396..19930533 1406..1269 690 100 Minus
Blast to na_te.dros performed on 2014-11-28 05:26:58 has no hits.

BS08740.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:36 Download gff for BS08740.complete
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 1..1389 17..1405 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:29 Download gff for BS08740.complete
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 602..1989 17..1404 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:06 Download gff for BS08740.complete
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 592..1979 17..1404 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:36 Download gff for BS08740.complete
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 600..1993 15..1410 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:30 Download gff for BS08740.complete
Subject Subject Range Query Range Percent Splice Strand
Hs6st-RA 592..1979 17..1404 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:30 Download gff for BS08740.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19930398..19930532 1270..1404 100 <- Minus
3R 19937254..19937438 1085..1269 100 <- Minus
3R 19937502..19938050 536..1084 100 <- Minus
3R 19938124..19938456 203..535 100 <- Minus
3R 20006235..20006420 17..202 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:06 Download gff for BS08740.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15756120..15756254 1270..1404 100 <- Minus
arm_3R 15762976..15763160 1085..1269 100 <- Minus
arm_3R 15763224..15763772 536..1084 100 <- Minus
arm_3R 15763846..15764178 203..535 100 <- Minus
arm_3R 15831957..15832142 17..202 100   Minus

BS08740.pep Sequence

Translation from 16 to 1404

> BS08740.pep
MPGDMHKNVSVQVDSDFALLLPSGVYEIKKMEPRSKIRTIIVFCLFLAIA
GIIGFGYFCQDQVCALSKRAVILQSSDILAYNELPLHQANSINGNANGNS
NGNGNSVGGITAMASKSSAPQNIIANAGLSYEDVLNDDFQFDMDGHDVMV
FLHIQKTGGTSFGRHLVRDLDLKRPCECQRQRKRCYCFRPHRNENWLFSR
YSTGWKCGLHADWTELTSCVDVELDKNEGETAKRRYFYISLLRQPIARYM
SEYRHVRRGATWKGSRHWCLGRQATAAELPACYKGKDWLDVDLDQFAGCE
SNLAANRQTRMLADLALVGCYNKSSMPAHERDRVMLASAKRNLAAMAYFG
LTEYQKMSQYIFEETFNLRFAIPFEQHNTTISATAVQNLRPDQKRRIEKL
NSLDIELYAFAKTLLFQRFEHLKAKDTNFEQRYANLGNIYFKQGVTEFNW
DSNVEDGLSTDH*

BS08740.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Hs6st-PB 462 CG4451-PB 1..462 1..462 2458 100 Plus
Hs6st-PA 462 CG4451-PA 1..462 1..462 2458 100 Plus