Clone Sequence Records
BS08740.3prime Sequence
942 bp (854 high quality bases) assembled on 2006-01-11
> BS08740.3prime
ATGGTCTAGAAAGCTTTCAATGATCCGTGCTGAGCCCATCCTCCACGTTG
CTGTCCCAGTTGAATTCCGTGACGCCCTGCTTGAAGTAGATGTTGCCCAG
ATTGGCGTAGCGCTGCTCAAAGTTTGTGTCCTTTGCCTTCAGATGTTCGA
AACGCTGAAAGAGCAAAGTCTTGGCAAAGGCATACAGCTCAATGTCCAGA
CTGTTTAGCTTCTCGATGCGACGCTTCTGGTCGGGTCGAAGATTCTGGAC
AGCAGTCGCCGAGATTGTGGTGTTGTGCTGCTCGAAGGGAATGGCGAAAC
GCAGGTTGAAAGTCTCCTCGAAAATGTACTGGGACATCTTTTGATATTCA
GTCAGTCCAAAGTAGGCCATGGCGGCCAGATTGCGCTTTGCGCTGGCCAG
CATCACGCGATCCCGCTCATGAGCGGGCATCGAAGACTTGTTGTAGCAGC
CGACGAGGGCGAGATCGGCCAGCATGCGGGTCTGGCGGTTAGCCGCCAGA
TTGGACTCGCAGCCGGCGAACTGGTCAAGATCCACGTCCAGCCAGTCCTT
GCCCTTGTAGCAAGCGGGCAGCTCGGCGGCGGTGGCCTGGCGGCCCAGGC
ACCAATGGCGTGATCCCTTCCAGGTGGCGCCCCGCCGCACATGCCGATAC
TCGGACATGTAGCGAGCAATGGGTTGTCGCAGCAGAGAAATGTAAAAGTA
CCGCCGCTTGGCCGTCTCCCCTTCGTTCTTGTCGAGCTCCACGTCCACGC
AGCTGGTCAGCTCGGTCCAGTCGGCATGGAGGCCGCATTTCCAGCCCGTC
GAGTAACGCGAAAAGAGCCAGTTCTCATTGCGATGCGGTCGGAAGCAGTA
GCAACGCTTCCTTTGCCGCTGGCACTCACAGGGACGCTTTAAATCCAGAT
CCCTGACCAAATGGCGGCCAAACGAGGTGCCGCCCGTCTTTT
BS08740.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4451-PA | 1389 | Hs6st-RA | 464..1389 | 942..17 | 4605 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs6st-RB | 3100 | CG4451-RB | 1055..1981 | 942..16 | 4620 | 99.9 | Minus |
Hs6st-RA | 2657 | CG4451-RA | 1055..1981 | 942..16 | 4620 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19937502..19938052 | 338..888 | 2740 | 99.8 | Plus |
3R | 32079331 | 3R | 19937254..19937440 | 153..339 | 935 | 100 | Plus |
3R | 32079331 | 3R | 19930396..19930533 | 16..153 | 690 | 100 | Plus |
3R | 32079331 | 3R | 19938124..19938179 | 887..942 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 14:07:54 has no hits.
BS08740.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:51 Download gff for
BS08740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs6st-PA | 464..1389 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:19 Download gff for
BS08740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4451-PA | 464..1389 | 17..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:44 Download gff for
BS08740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs6st-RA | 1055..1983 | 12..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:33:47 Download gff for
BS08740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs6st-RA | 1055..1983 | 12..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:33:47 Download gff for
BS08740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19930394..19930532 | 12..152 | 98 | <- | Plus |
3R | 19937254..19937438 | 153..337 | 100 | <- | Plus |
3R | 19937502..19938050 | 338..886 | 99 | <- | Plus |
3R | 19938124..19938179 | 887..942 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:44 Download gff for
BS08740.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15756116..15756254 | 12..152 | 98 | <- | Plus |
arm_3R | 15762976..15763160 | 153..337 | 100 | <- | Plus |
arm_3R | 15763224..15763772 | 338..886 | 99 | <- | Plus |
arm_3R | 15763846..15763901 | 887..942 | 100 | | Plus |
BS08740.5prime Sequence
843 bp (786 high quality bases) assembled on 2006-01-11
> BS08740.5prime
GAAGTTATCAGTCGACATGCCCGGGGATATGCATAAGAACGTATCTGTTC
AAGTCGATAGTGATTTTGCCTTATTGCTGCCCAGTGGTGTTTATGAAATC
AAGAAAATGGAACCGCGCTCCAAAATCCGAACAATCATTGTGTTTTGCCT
CTTCCTGGCCATCGCCGGCATCATCGGATTTGGATACTTTTGTCAAGATC
AGGTATGCGCCCTATCCAAACGTGCCGTCATACTGCAGTCTTCGGATATC
CTCGCTTATAATGAGCTCCCACTCCATCAGGCCAACAGCATTAATGGCAA
TGCGAACGGCAATAGCAATGGCAACGGCAACAGTGTGGGCGGAATCACGG
CCATGGCCTCCAAGTCCTCCGCACCGCAGAACATCATCGCCAATGCAGGG
TTGAGTTACGAGGATGTACTAAACGATGATTTCCAGTTCGACATGGATGG
CCATGACGTGATGGTCTTTCTGCACATCCAAAAGACGGGCGGCACCTCGT
TTGGCCGCCATTTGGTCAGGGATCTGGATTTAAAGCGTCCCTGTGAGTGC
CAGCGGCAAAGGAAGCGTTGCTACTGCTTCCGACCGCATCGCAATGAGAA
CTGGCTCTTTTCGCGCTACTCGACGGGCTGGAAATGCGGCCTCCATGCCG
ACTGGACCGAGCTGACCAGCTGCGTGGACGTGGAGCTCGACAAGAACGAA
GGGGAGACGGCCAAGCGGCGGTACTTTTACATTTCTCTGCTGCGACAACC
CATTGCTCGCTACATGTCCGAGTATCGGCATGTGCGGCGGGGCGCCACCT
GGAAGGGATCACGCCATTGGTGCCTGGGCCGCCAGGCCACCGC
BS08740.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4451-PA | 1389 | Hs6st-RA | 1..827 | 17..843 | 4135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs6st-RB | 3100 | CG4451-RB | 590..1418 | 15..843 | 4145 | 100 | Plus |
Hs6st-RA | 2657 | CG4451-RA | 590..1418 | 15..843 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19938124..19938459 | 535..200 | 1680 | 100 | Minus |
3R | 32079331 | 3R | 19937743..19938052 | 843..534 | 1550 | 100 | Minus |
3R | 32079331 | 3R | 20006232..20006422 | 205..15 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:34:26 has no hits.
BS08740.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:52 Download gff for
BS08740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs6st-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:20 Download gff for
BS08740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4451-PA | 1..827 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:09:41 Download gff for
BS08740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs6st-RA | 590..1418 | 15..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:35:33 Download gff for
BS08740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs6st-RA | 590..1418 | 15..843 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:35:33 Download gff for
BS08740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19937743..19938050 | 536..843 | 100 | <- | Minus |
3R | 19938124..19938456 | 203..535 | 100 | <- | Minus |
3R | 20006235..20006422 | 15..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:09:41 Download gff for
BS08740.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15763465..15763772 | 536..843 | 100 | <- | Minus |
arm_3R | 15763846..15764178 | 203..535 | 100 | <- | Minus |
arm_3R | 15831957..15832144 | 15..202 | 100 | | Minus |
BS08740.complete Sequence
1421 bp (1421 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636252
> BS08740.complete
GAAGTTATCAGTCGACATGCCCGGGGATATGCATAAGAACGTATCTGTTC
AAGTCGATAGTGATTTTGCCTTATTGCTGCCCAGTGGTGTTTATGAAATC
AAGAAAATGGAACCGCGCTCCAAAATCCGAACAATCATTGTGTTTTGCCT
CTTCCTGGCCATCGCCGGCATCATCGGATTTGGATACTTTTGTCAAGATC
AGGTATGCGCCCTATCCAAACGTGCCGTCATACTGCAGTCTTCGGATATC
CTCGCTTATAATGAGCTCCCACTCCATCAGGCCAACAGCATTAATGGCAA
TGCGAACGGCAATAGCAATGGCAACGGCAACAGTGTGGGCGGAATCACGG
CCATGGCCTCCAAGTCCTCCGCACCGCAGAACATCATCGCCAATGCAGGG
TTGAGTTACGAGGATGTACTAAACGATGATTTCCAGTTCGACATGGATGG
CCATGACGTGATGGTCTTTCTGCACATCCAAAAGACGGGCGGCACCTCGT
TTGGCCGCCATTTGGTCAGGGATCTGGATTTAAAGCGTCCCTGTGAGTGC
CAGCGGCAAAGGAAGCGTTGCTACTGCTTCCGACCGCATCGCAATGAGAA
CTGGCTCTTTTCGCGCTACTCGACGGGCTGGAAATGCGGCCTCCATGCCG
ACTGGACCGAGCTGACCAGCTGCGTGGACGTGGAGCTCGACAAGAACGAA
GGGGAGACGGCCAAGCGGCGGTACTTTTACATTTCTCTGCTGCGACAACC
CATTGCTCGCTACATGTCCGAGTATCGGCATGTGCGGCGGGGCGCCACCT
GGAAGGGATCACGCCATTGGTGCCTGGGCCGCCAGGCCACCGCCGCCGAG
CTGCCCGCTTGCTACAAGGGCAAGGACTGGCTGGACGTGGATCTTGACCA
GTTCGCCGGCTGCGAGTCCAATCTGGCGGCTAACCGCCAGACCCGCATGC
TGGCCGATCTCGCCCTCGTCGGCTGCTACAACAAGTCTTCGATGCCCGCT
CATGAGCGGGATCGCGTGATGCTGGCCAGCGCAAAGCGCAATCTGGCCGC
CATGGCCTACTTTGGACTGACTGAATATCAAAAGATGTCCCAGTACATTT
TCGAGGAGACTTTCAACCTGCGTTTCGCCATTCCCTTCGAGCAGCACAAC
ACCACAATCTCGGCGACTGCTGTCCAGAATCTTCGACCCGACCAGAAGCG
TCGCATCGAGAAGCTAAACAGTCTGGACATTGAGCTGTATGCCTTTGCCA
AGACTTTGCTCTTTCAGCGTTTCGAACATCTGAAGGCAAAGGACACAAAC
TTTGAGCAGCGCTACGCCAATCTGGGCAACATCTACTTCAAGCAGGGCGT
CACGGAATTCAACTGGGACAGCAACGTGGAGGATGGGCTCAGCACGGATC
ATTGAAAGCTTTCTAGACCAT
BS08740.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:26:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs6st-RB | 1389 | CG4451-PB | 1..1389 | 17..1405 | 6945 | 100 | Plus |
Hs6st-RA | 1389 | CG4451-PA | 1..1389 | 17..1405 | 6945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs6st-RB | 3100 | CG4451-RB | 590..1981 | 15..1406 | 6960 | 100 | Plus |
Hs6st-RA | 2657 | CG4451-RA | 590..1981 | 15..1406 | 6960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19937502..19938052 | 1084..534 | 2755 | 100 | Minus |
3R | 32079331 | 3R | 19938124..19938459 | 535..200 | 1680 | 100 | Minus |
3R | 32079331 | 3R | 20006232..20006422 | 205..15 | 955 | 100 | Minus |
3R | 32079331 | 3R | 19937254..19937440 | 1269..1083 | 935 | 100 | Minus |
3R | 32079331 | 3R | 19930396..19930533 | 1406..1269 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:26:58 has no hits.
BS08740.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:36 Download gff for
BS08740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs6st-RA | 1..1389 | 17..1405 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:29 Download gff for
BS08740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs6st-RA | 602..1989 | 17..1404 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:06 Download gff for
BS08740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs6st-RA | 592..1979 | 17..1404 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:36 Download gff for
BS08740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs6st-RA | 600..1993 | 15..1410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:30 Download gff for
BS08740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hs6st-RA | 592..1979 | 17..1404 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:30 Download gff for
BS08740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19930398..19930532 | 1270..1404 | 100 | <- | Minus |
3R | 19937254..19937438 | 1085..1269 | 100 | <- | Minus |
3R | 19937502..19938050 | 536..1084 | 100 | <- | Minus |
3R | 19938124..19938456 | 203..535 | 100 | <- | Minus |
3R | 20006235..20006420 | 17..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:06 Download gff for
BS08740.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15756120..15756254 | 1270..1404 | 100 | <- | Minus |
arm_3R | 15762976..15763160 | 1085..1269 | 100 | <- | Minus |
arm_3R | 15763224..15763772 | 536..1084 | 100 | <- | Minus |
arm_3R | 15763846..15764178 | 203..535 | 100 | <- | Minus |
arm_3R | 15831957..15832142 | 17..202 | 100 | | Minus |
BS08740.pep Sequence
Translation from 16 to 1404
> BS08740.pep
MPGDMHKNVSVQVDSDFALLLPSGVYEIKKMEPRSKIRTIIVFCLFLAIA
GIIGFGYFCQDQVCALSKRAVILQSSDILAYNELPLHQANSINGNANGNS
NGNGNSVGGITAMASKSSAPQNIIANAGLSYEDVLNDDFQFDMDGHDVMV
FLHIQKTGGTSFGRHLVRDLDLKRPCECQRQRKRCYCFRPHRNENWLFSR
YSTGWKCGLHADWTELTSCVDVELDKNEGETAKRRYFYISLLRQPIARYM
SEYRHVRRGATWKGSRHWCLGRQATAAELPACYKGKDWLDVDLDQFAGCE
SNLAANRQTRMLADLALVGCYNKSSMPAHERDRVMLASAKRNLAAMAYFG
LTEYQKMSQYIFEETFNLRFAIPFEQHNTTISATAVQNLRPDQKRRIEKL
NSLDIELYAFAKTLLFQRFEHLKAKDTNFEQRYANLGNIYFKQGVTEFNW
DSNVEDGLSTDH*
BS08740.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hs6st-PB | 462 | CG4451-PB | 1..462 | 1..462 | 2458 | 100 | Plus |
Hs6st-PA | 462 | CG4451-PA | 1..462 | 1..462 | 2458 | 100 | Plus |