Clone BS08745 Report

Search the DGRC for BS08745

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG7544-RA
Protein status:BS08745.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08745.3prime Sequence

877 bp (864 high quality bases) assembled on 2006-01-11

> BS08745.3prime
ATGGTCTAGAAAGCTTTTATGTTGTCCCCTGCTGTAGTGGCTCCGAGTGG
AAGCTCCAGGCCACCGCCCACCGAGTCGTGTGTCCCTGATGGAATTCAGT
GGTGCTGACATTCGCCACCTGCAGCTCCTTGAGGTAATCCAGTATTCTTG
GAACGTTGGCCTTGACGCCCAGCATCGTGGTGAAGATTCGCACACGCTCC
TTGTTCTCCAGACTCTCGTCTATAATGCGTTGCACAAACTGTACCTCGCC
ACCCACGCAGGTGAGTTCCTCCTGGCTTCCAGTTCTGGCATTATTGGGTG
CTGGTCGTCTCTCTGGATTCCTGGTATTGCCGCCTAAGGGATTTGGTAAG
TTCGAGTCGAAGAAGGGTGGATTGCACAGGCAAAATTGATACTGCAACTG
TTGCTGATCCTGCTCAAAATAGCTCTTAAAGATGTTCGTGTTGTCTGGTT
GAGCATAGACTTCTATAAGGCTTTCCATGTGATTTCTCTTTACATTCTCC
TTGGCGTATTCTATGTTTTGCGGTTTCGATTCCAAAGCCAACATGTGCCA
ACCATTTTTCTTGGCCCCAAGGAGTGAATAAATGCAGGAGGAGCCGCAGC
CTATATCTATACCACGTATGTTCTGCAAATTTAGAGGTTCCATTAGATCC
TCCAACCACAAAATGTAATTCAAACGTAGTGCTAATGTGGGCACCAAACT
TCCGGGTGCAAAATCCACATCTAAATCGTAATATTCCTTCAACAGCATTT
TGGTCAACTCACGAAGGGTCTTTTCATTGCGAAAGTTCACAGAAACCTTG
CCATTGAGCTCCAACTGGCACTGCTGCCGAAAATCTTTGTATTTTATAGC
CATTTTGGTATAGTCGGGCTGCGTGCG

BS08745.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7544-PA 918 CG7544-RA 58..918 877..17 4305 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7544-RB 1592 CG7544-RB 164..1026 877..15 4315 100 Minus
CG7544-RA 1585 CG7544-RA 164..1026 877..15 4315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15148410..15148823 602..189 2070 100 Minus
2R 25286936 2R 15148149..15148361 812..600 1065 100 Minus
2R 25286936 2R 15148883..15149057 189..15 875 100 Minus
2R 25286936 2R 15148023..15148089 877..811 335 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:53:33 has no hits.

BS08745.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:58 Download gff for BS08745.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7544-PA 58..918 17..877 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:27 Download gff for BS08745.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7544-PA 58..918 17..877 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:27:11 Download gff for BS08745.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 164..1028 11..877 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:28 Download gff for BS08745.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 164..1028 11..877 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:28 Download gff for BS08745.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15148023..15148088 812..877 100 -> Minus
2R 15148150..15148360 601..811 100 -> Minus
2R 15148412..15148823 189..600 100 -> Minus
2R 15148884..15149059 11..188 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:27:11 Download gff for BS08745.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11035528..11035593 812..877 100 -> Minus
arm_2R 11035655..11035865 601..811 100 -> Minus
arm_2R 11035917..11036328 189..600 100 -> Minus
arm_2R 11036389..11036564 11..188 98   Minus

BS08745.5prime Sequence

863 bp (829 high quality bases) assembled on 2006-01-11

> BS08745.5prime
GAAGTTATCAGTCGACATGGTAAAAACTAAGGGAAACCAAAAGATAGTCG
GCATGCATCCACGTAATGTGTTACGCACGCAGCCCGACTATACCAAAATG
GCTATAAAATACAAAGATTTTCGGCAGCAGTGCCAGTTGGAGCTCAATGG
CAAGGTTTCTGTGAACTTTCGCAATGAAAAGACCCTTCGTGAGTTGACCA
AAATGCTGTTGAAGGAATATTACGATTTAGATGTGGATTTTGCACCCGGA
AGTTTGGTGCCCACATTAGCACTACGTTTGAATTACATTTTGTGGTTGGA
GGATCTAATGGAACCTCTAAATTTGCAGAACATACGTGGTATAGATATAG
GCTGCGGCTCCTCCTGCATTTATTCACTCCTTGGGGCCAAGAAAAATGGT
TGGCACATGTTGGCTTTGGAATCGAAACCGCAAAACATAGAATACGCCAA
GGAGAATGTAAAGAGAAATCACATGGAAAGCCTTATAGAAGTCTATGCTC
AACCAGACAACACGAACATCTTTAAGAGCTATTTTGAGCAGGATCAGCAA
CAGTTGCAGTATCAATTTTGCCTGTGCAATCCACCCTTCTTCGACTCGAA
CTTACCAAATCCCTTAGGCGGCAATACCAGGAATCCAGAGAGACGACCAG
CACCCAATAATGCCAGAACTGGAAGCCAGGAGGAACTCACCTGCGTGGGT
GGCGAGGTACAGTTTGTGCAACGCATTATAGACGAGAGTCTGGAGAACAA
GGAGCGTGTGCGAATCTTCACCACGATGCTGGGCGTCAAGGCCAACGTTC
CAAGAATACTGGATTACCTCAAGGAGCTGCAGGTGGCGAATGTCAGCACC
ACTGAATTCCATC

BS08745.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7544-PA 918 CG7544-RA 1..847 17..863 4235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7544-RB 1592 CG7544-RB 107..953 17..863 4235 100 Plus
CG7544-RA 1585 CG7544-RA 107..953 17..863 4235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15148410..15148823 349..762 2070 100 Plus
2R 25286936 2R 15148149..15148361 139..351 1065 100 Plus
2R 25286936 2R 15147966..15148089 17..140 620 100 Plus
2R 25286936 2R 15148883..15148984 762..863 510 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:49:17 has no hits.

BS08745.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:59 Download gff for BS08745.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7544-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:28 Download gff for BS08745.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7544-PA 1..847 17..863 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:17:43 Download gff for BS08745.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 107..953 17..863 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:06:14 Download gff for BS08745.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 107..953 17..863 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:06:14 Download gff for BS08745.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15148884..15148984 763..863 100   Plus
2R 15147966..15148088 17..139 100 -> Plus
2R 15148150..15148360 140..350 100 -> Plus
2R 15148412..15148823 351..762 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:17:43 Download gff for BS08745.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11035655..11035865 140..350 100 -> Plus
arm_2R 11035471..11035593 17..139 100 -> Plus
arm_2R 11035917..11036328 351..762 100 -> Plus
arm_2R 11036389..11036489 763..863 100   Plus

BS08745.complete Sequence

950 bp (950 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636253

> BS08745.complete
GAAGTTATCAGTCGACATGGTAAAAACTAAGGGAAACCAAAAGATAGTCG
GCATGCATCCACGTAATGTGTTACGCACGCAGCCCGACTATACCAAAATG
GCTATAAAATACAAAGATTTTCGGCAGCAGTGCCAGTTGGAGCTCAATGG
CAAGGTTTCTGTGAACTTTCGCAATGAAAAGACCCTTCGTGAGTTGACCA
AAATGCTGTTGAAGGAATATTACGATTTAGATGTGGATTTTGCACCCGGA
AGTTTGGTGCCCACATTAGCACTACGTTTGAATTACATTTTGTGGTTGGA
GGATCTAATGGAACCTCTAAATTTGCAGAACATACGTGGTATAGATATAG
GCTGCGGCTCCTCCTGCATTTATTCACTCCTTGGGGCCAAGAAAAATGGT
TGGCACATGTTGGCTTTGGAATCGAAACCGCAAAACATAGAATACGCCAA
GGAGAATGTAAAGAGAAATCACATGGAAAGCCTTATAGAAGTCTATGCTC
AACCAGACAACACGAACATCTTTAAGAGCTATTTTGAGCAGGATCAGCAA
CAGTTGCAGTATCAATTTTGCCTGTGCAATCCACCCTTCTTCGACTCGAA
CTTACCAAATCCCTTAGGCGGCAATACCAGGAATCCAGAGAGACGACCAG
CACCCAATAATGCCAGAACTGGAAGCCAGGAGGAACTCACCTGCGTGGGT
GGCGAGGTACAGTTTGTGCAACGCATTATAGACGAGAGTCTGGAGAACAA
GGAGCGTGTGCGAATCTTCACCACGATGCTGGGCGTCAAGGCCAACGTTC
CAAGAATACTGGATTACCTCAAGGAGCTGCAGGTGGCGAATGTCAGCACC
ACTGAATTCCATCAGGGACACACGACTCGGTGGGCGGTGGCCTGGAGCTT
CCACTCGGAGCCACTACAGCAGGGGACAACATAAAAGCTTTCTAGACCAT

BS08745.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:40:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7544-RB 918 CG7544-PB 1..918 17..934 4590 100 Plus
CG7544-RA 918 CG7544-PA 1..918 17..934 4590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7544-RB 1592 CG7544-RB 107..1026 17..936 4600 100 Plus
CG7544-RA 1585 CG7544-RA 107..1026 17..936 4600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:40:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15148410..15148823 349..762 2070 100 Plus
2R 25286936 2R 15148149..15148361 139..351 1065 100 Plus
2R 25286936 2R 15148883..15149057 762..936 875 100 Plus
2R 25286936 2R 15147966..15148089 17..140 620 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:40:47 has no hits.

BS08745.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:37 Download gff for BS08745.complete
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 1..918 17..934 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:08 Download gff for BS08745.complete
Subject Subject Range Query Range Percent Splice Strand
CG7544-RB 90..1011 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:55 Download gff for BS08745.complete
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 107..1022 17..932 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:38 Download gff for BS08745.complete
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 90..1011 17..940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:36 Download gff for BS08745.complete
Subject Subject Range Query Range Percent Splice Strand
CG7544-RA 107..1022 17..932 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:36 Download gff for BS08745.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15147966..15148088 17..139 100 -> Plus
2R 15148150..15148360 140..350 100 -> Plus
2R 15148412..15148823 351..762 100 -> Plus
2R 15148884..15149053 763..932 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:55 Download gff for BS08745.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11035471..11035593 17..139 100 -> Plus
arm_2R 11035655..11035865 140..350 100 -> Plus
arm_2R 11035917..11036328 351..762 100 -> Plus
arm_2R 11036389..11036558 763..932 100   Plus

BS08745.pep Sequence

Translation from 16 to 933

> BS08745.pep
MVKTKGNQKIVGMHPRNVLRTQPDYTKMAIKYKDFRQQCQLELNGKVSVN
FRNEKTLRELTKMLLKEYYDLDVDFAPGSLVPTLALRLNYILWLEDLMEP
LNLQNIRGIDIGCGSSCIYSLLGAKKNGWHMLALESKPQNIEYAKENVKR
NHMESLIEVYAQPDNTNIFKSYFEQDQQQLQYQFCLCNPPFFDSNLPNPL
GGNTRNPERRPAPNNARTGSQEELTCVGGEVQFVQRIIDESLENKERVRI
FTTMLGVKANVPRILDYLKELQVANVSTTEFHQGHTTRWAVAWSFHSEPL
QQGTT*

BS08745.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7544-PB 305 CG7544-PB 1..305 1..305 1618 100 Plus
CG7544-PA 305 CG7544-PA 1..305 1..305 1618 100 Plus