Clone Sequence Records
BS08745.3prime Sequence
877 bp (864 high quality bases) assembled on 2006-01-11
> BS08745.3prime
ATGGTCTAGAAAGCTTTTATGTTGTCCCCTGCTGTAGTGGCTCCGAGTGG
AAGCTCCAGGCCACCGCCCACCGAGTCGTGTGTCCCTGATGGAATTCAGT
GGTGCTGACATTCGCCACCTGCAGCTCCTTGAGGTAATCCAGTATTCTTG
GAACGTTGGCCTTGACGCCCAGCATCGTGGTGAAGATTCGCACACGCTCC
TTGTTCTCCAGACTCTCGTCTATAATGCGTTGCACAAACTGTACCTCGCC
ACCCACGCAGGTGAGTTCCTCCTGGCTTCCAGTTCTGGCATTATTGGGTG
CTGGTCGTCTCTCTGGATTCCTGGTATTGCCGCCTAAGGGATTTGGTAAG
TTCGAGTCGAAGAAGGGTGGATTGCACAGGCAAAATTGATACTGCAACTG
TTGCTGATCCTGCTCAAAATAGCTCTTAAAGATGTTCGTGTTGTCTGGTT
GAGCATAGACTTCTATAAGGCTTTCCATGTGATTTCTCTTTACATTCTCC
TTGGCGTATTCTATGTTTTGCGGTTTCGATTCCAAAGCCAACATGTGCCA
ACCATTTTTCTTGGCCCCAAGGAGTGAATAAATGCAGGAGGAGCCGCAGC
CTATATCTATACCACGTATGTTCTGCAAATTTAGAGGTTCCATTAGATCC
TCCAACCACAAAATGTAATTCAAACGTAGTGCTAATGTGGGCACCAAACT
TCCGGGTGCAAAATCCACATCTAAATCGTAATATTCCTTCAACAGCATTT
TGGTCAACTCACGAAGGGTCTTTTCATTGCGAAAGTTCACAGAAACCTTG
CCATTGAGCTCCAACTGGCACTGCTGCCGAAAATCTTTGTATTTTATAGC
CATTTTGGTATAGTCGGGCTGCGTGCG
BS08745.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7544-PA | 918 | CG7544-RA | 58..918 | 877..17 | 4305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7544-RB | 1592 | CG7544-RB | 164..1026 | 877..15 | 4315 | 100 | Minus |
CG7544-RA | 1585 | CG7544-RA | 164..1026 | 877..15 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15148410..15148823 | 602..189 | 2070 | 100 | Minus |
2R | 25286936 | 2R | 15148149..15148361 | 812..600 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 15148883..15149057 | 189..15 | 875 | 100 | Minus |
2R | 25286936 | 2R | 15148023..15148089 | 877..811 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:53:33 has no hits.
BS08745.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:58 Download gff for
BS08745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-PA | 58..918 | 17..877 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:27 Download gff for
BS08745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-PA | 58..918 | 17..877 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:27:11 Download gff for
BS08745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 164..1028 | 11..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:16:28 Download gff for
BS08745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 164..1028 | 11..877 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:16:28 Download gff for
BS08745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15148023..15148088 | 812..877 | 100 | -> | Minus |
2R | 15148150..15148360 | 601..811 | 100 | -> | Minus |
2R | 15148412..15148823 | 189..600 | 100 | -> | Minus |
2R | 15148884..15149059 | 11..188 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:27:11 Download gff for
BS08745.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11035528..11035593 | 812..877 | 100 | -> | Minus |
arm_2R | 11035655..11035865 | 601..811 | 100 | -> | Minus |
arm_2R | 11035917..11036328 | 189..600 | 100 | -> | Minus |
arm_2R | 11036389..11036564 | 11..188 | 98 | | Minus |
BS08745.5prime Sequence
863 bp (829 high quality bases) assembled on 2006-01-11
> BS08745.5prime
GAAGTTATCAGTCGACATGGTAAAAACTAAGGGAAACCAAAAGATAGTCG
GCATGCATCCACGTAATGTGTTACGCACGCAGCCCGACTATACCAAAATG
GCTATAAAATACAAAGATTTTCGGCAGCAGTGCCAGTTGGAGCTCAATGG
CAAGGTTTCTGTGAACTTTCGCAATGAAAAGACCCTTCGTGAGTTGACCA
AAATGCTGTTGAAGGAATATTACGATTTAGATGTGGATTTTGCACCCGGA
AGTTTGGTGCCCACATTAGCACTACGTTTGAATTACATTTTGTGGTTGGA
GGATCTAATGGAACCTCTAAATTTGCAGAACATACGTGGTATAGATATAG
GCTGCGGCTCCTCCTGCATTTATTCACTCCTTGGGGCCAAGAAAAATGGT
TGGCACATGTTGGCTTTGGAATCGAAACCGCAAAACATAGAATACGCCAA
GGAGAATGTAAAGAGAAATCACATGGAAAGCCTTATAGAAGTCTATGCTC
AACCAGACAACACGAACATCTTTAAGAGCTATTTTGAGCAGGATCAGCAA
CAGTTGCAGTATCAATTTTGCCTGTGCAATCCACCCTTCTTCGACTCGAA
CTTACCAAATCCCTTAGGCGGCAATACCAGGAATCCAGAGAGACGACCAG
CACCCAATAATGCCAGAACTGGAAGCCAGGAGGAACTCACCTGCGTGGGT
GGCGAGGTACAGTTTGTGCAACGCATTATAGACGAGAGTCTGGAGAACAA
GGAGCGTGTGCGAATCTTCACCACGATGCTGGGCGTCAAGGCCAACGTTC
CAAGAATACTGGATTACCTCAAGGAGCTGCAGGTGGCGAATGTCAGCACC
ACTGAATTCCATC
BS08745.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7544-PA | 918 | CG7544-RA | 1..847 | 17..863 | 4235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7544-RB | 1592 | CG7544-RB | 107..953 | 17..863 | 4235 | 100 | Plus |
CG7544-RA | 1585 | CG7544-RA | 107..953 | 17..863 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15148410..15148823 | 349..762 | 2070 | 100 | Plus |
2R | 25286936 | 2R | 15148149..15148361 | 139..351 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 15147966..15148089 | 17..140 | 620 | 100 | Plus |
2R | 25286936 | 2R | 15148883..15148984 | 762..863 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:49:17 has no hits.
BS08745.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:48:59 Download gff for
BS08745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:28 Download gff for
BS08745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-PA | 1..847 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:17:43 Download gff for
BS08745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 107..953 | 17..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:06:14 Download gff for
BS08745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 107..953 | 17..863 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:06:14 Download gff for
BS08745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15148884..15148984 | 763..863 | 100 | | Plus |
2R | 15147966..15148088 | 17..139 | 100 | -> | Plus |
2R | 15148150..15148360 | 140..350 | 100 | -> | Plus |
2R | 15148412..15148823 | 351..762 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:17:43 Download gff for
BS08745.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11035655..11035865 | 140..350 | 100 | -> | Plus |
arm_2R | 11035471..11035593 | 17..139 | 100 | -> | Plus |
arm_2R | 11035917..11036328 | 351..762 | 100 | -> | Plus |
arm_2R | 11036389..11036489 | 763..863 | 100 | | Plus |
BS08745.complete Sequence
950 bp (950 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636253
> BS08745.complete
GAAGTTATCAGTCGACATGGTAAAAACTAAGGGAAACCAAAAGATAGTCG
GCATGCATCCACGTAATGTGTTACGCACGCAGCCCGACTATACCAAAATG
GCTATAAAATACAAAGATTTTCGGCAGCAGTGCCAGTTGGAGCTCAATGG
CAAGGTTTCTGTGAACTTTCGCAATGAAAAGACCCTTCGTGAGTTGACCA
AAATGCTGTTGAAGGAATATTACGATTTAGATGTGGATTTTGCACCCGGA
AGTTTGGTGCCCACATTAGCACTACGTTTGAATTACATTTTGTGGTTGGA
GGATCTAATGGAACCTCTAAATTTGCAGAACATACGTGGTATAGATATAG
GCTGCGGCTCCTCCTGCATTTATTCACTCCTTGGGGCCAAGAAAAATGGT
TGGCACATGTTGGCTTTGGAATCGAAACCGCAAAACATAGAATACGCCAA
GGAGAATGTAAAGAGAAATCACATGGAAAGCCTTATAGAAGTCTATGCTC
AACCAGACAACACGAACATCTTTAAGAGCTATTTTGAGCAGGATCAGCAA
CAGTTGCAGTATCAATTTTGCCTGTGCAATCCACCCTTCTTCGACTCGAA
CTTACCAAATCCCTTAGGCGGCAATACCAGGAATCCAGAGAGACGACCAG
CACCCAATAATGCCAGAACTGGAAGCCAGGAGGAACTCACCTGCGTGGGT
GGCGAGGTACAGTTTGTGCAACGCATTATAGACGAGAGTCTGGAGAACAA
GGAGCGTGTGCGAATCTTCACCACGATGCTGGGCGTCAAGGCCAACGTTC
CAAGAATACTGGATTACCTCAAGGAGCTGCAGGTGGCGAATGTCAGCACC
ACTGAATTCCATCAGGGACACACGACTCGGTGGGCGGTGGCCTGGAGCTT
CCACTCGGAGCCACTACAGCAGGGGACAACATAAAAGCTTTCTAGACCAT
BS08745.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:40:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7544-RB | 918 | CG7544-PB | 1..918 | 17..934 | 4590 | 100 | Plus |
CG7544-RA | 918 | CG7544-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7544-RB | 1592 | CG7544-RB | 107..1026 | 17..936 | 4600 | 100 | Plus |
CG7544-RA | 1585 | CG7544-RA | 107..1026 | 17..936 | 4600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15148410..15148823 | 349..762 | 2070 | 100 | Plus |
2R | 25286936 | 2R | 15148149..15148361 | 139..351 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 15148883..15149057 | 762..936 | 875 | 100 | Plus |
2R | 25286936 | 2R | 15147966..15148089 | 17..140 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:40:47 has no hits.
BS08745.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:37 Download gff for
BS08745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 1..918 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:08 Download gff for
BS08745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RB | 90..1011 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:12:55 Download gff for
BS08745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 107..1022 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:38 Download gff for
BS08745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 90..1011 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:36 Download gff for
BS08745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 107..1022 | 17..932 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:36 Download gff for
BS08745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15147966..15148088 | 17..139 | 100 | -> | Plus |
2R | 15148150..15148360 | 140..350 | 100 | -> | Plus |
2R | 15148412..15148823 | 351..762 | 100 | -> | Plus |
2R | 15148884..15149053 | 763..932 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:12:55 Download gff for
BS08745.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11035471..11035593 | 17..139 | 100 | -> | Plus |
arm_2R | 11035655..11035865 | 140..350 | 100 | -> | Plus |
arm_2R | 11035917..11036328 | 351..762 | 100 | -> | Plus |
arm_2R | 11036389..11036558 | 763..932 | 100 | | Plus |
BS08745.pep Sequence
Translation from 16 to 933
> BS08745.pep
MVKTKGNQKIVGMHPRNVLRTQPDYTKMAIKYKDFRQQCQLELNGKVSVN
FRNEKTLRELTKMLLKEYYDLDVDFAPGSLVPTLALRLNYILWLEDLMEP
LNLQNIRGIDIGCGSSCIYSLLGAKKNGWHMLALESKPQNIEYAKENVKR
NHMESLIEVYAQPDNTNIFKSYFEQDQQQLQYQFCLCNPPFFDSNLPNPL
GGNTRNPERRPAPNNARTGSQEELTCVGGEVQFVQRIIDESLENKERVRI
FTTMLGVKANVPRILDYLKELQVANVSTTEFHQGHTTRWAVAWSFHSEPL
QQGTT*
BS08745.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7544-PB | 305 | CG7544-PB | 1..305 | 1..305 | 1618 | 100 | Plus |
CG7544-PA | 305 | CG7544-PA | 1..305 | 1..305 | 1618 | 100 | Plus |