Clone Sequence Records
BS08746.3prime Sequence
837 bp (831 high quality bases) assembled on 2006-01-11
> BS08746.3prime
ATGGTCTAGAAAGCTTTCAATAGTGATAGCCGGGACCTTTGGCCGGTTGG
TTTGGTGGCAGATAGCCGGGTGTCTCCTTGTCCGAGTAACGAGGATCGTT
GGGAGAGGGTCCTGGTGGGCCGGGACGAGTGGGGCCTGGTGGACCGGGCC
GAGTGGGGCCTGGTGGGCCAGGACGAGTGGGGCCTGGTGGTCCTGGTGGT
CCGGGACGAGTGGGGCCTGGTGGTCCTGGTGGTCCGGGACGAGTGGGGCC
TGTTGGTCCGGGGGGTCCGGGAGGTCCGTAGGGCCCAGGACGAGTGGGTC
CAGGTGGGCCGGGTGGTCCCGGTGGTCCCGGTGGTCCGAAAGGTCCAGGC
TTAGTGGGTCCCTTGGGTCCGGGAGGTCCAGGTGGTCCGGGTGGTCCAGG
TGGGCCGGGGGGTCCGTTGGGTCCATTGGGTCCCTTGGGGCCGCCGGGTC
CTTTAGGTCCGCCTGGGCCGCCGGGGCCTACGCCGCCGCCGTCTCCCTTG
CCGCCATTTCCGCCGAATCCTCCCTCGGGTCCAACAACGTGGACATATGG
GGGTGCCGGTGGTCCAGTGGGGCCTTCAACGTGAACATATTTGCCCGAAT
CATCGTGATAATACCGACCATCGTTAATACCGTTATAGCGTCCGCCATTG
CCATTATATTTACCGTTATTTGTGTCAATGTTTGACGAATAGTACTGACG
GTTCGTTGTCTTTTGGTCGTCAATGTCGAGAATTAGACGACGGTTCTGCT
CATCGAACTTAGCAGAGTAGACGCATTGCAAGAAAATGCATGCGACGGCC
ATGCACAGAGCTGCACGCGCCATGTCGACTGATAACT
BS08746.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10625-PA | 807 | CG10625-RA | 1..807 | 823..17 | 4035 | 100 | Minus |
CG10625-PD | 807 | CG10625-RD | 1..807 | 823..17 | 4035 | 100 | Minus |
CG10625-PC | 2049 | CG10625-RC | 1397..2049 | 669..17 | 3265 | 100 | Minus |
CG10625-PB | 2049 | CG10625-RB | 1397..2049 | 669..17 | 3265 | 100 | Minus |
CG10625-PC | 2049 | CG10625-RC | 1..156 | 823..668 | 780 | 100 | Minus |
CG10625-PB | 2049 | CG10625-RB | 1..156 | 823..668 | 780 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10625-RD | 2428 | CG10625-RD | 353..1159 | 823..17 | 4035 | 100 | Minus |
CG10625-RA | 2212 | CG10625-RA | 137..943 | 823..17 | 4035 | 100 | Minus |
CG10625-RJ | 3171 | CG10625-RJ | 353..1133 | 823..43 | 3905 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:07:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5540619..5540887 | 111..379 | 1345 | 100 | Plus |
3L | 28110227 | 3L | 5541078..5541268 | 441..631 | 955 | 100 | Plus |
3L | 28110227 | 3L | 5544968..5545102 | 666..800 | 660 | 99.3 | Plus |
3L | 28110227 | 3L | 5540635..5540780 | 103..239 | 380 | 85.6 | Plus |
3L | 28110227 | 3L | 5540619..5540747 | 135..272 | 370 | 86.2 | Plus |
3L | 28110227 | 3L | 5540491..5540563 | 43..115 | 365 | 100 | Plus |
3L | 28110227 | 3L | 5541332..5541372 | 629..669 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 14:07:44 has no hits.
BS08746.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:00 Download gff for
BS08746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-PD | 1..807 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:30 Download gff for
BS08746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-PD | 1..807 | 17..823 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:42 Download gff for
BS08746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 137..947 | 14..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:33:46 Download gff for
BS08746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 137..947 | 14..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:33:46 Download gff for
BS08746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5540219..5540248 | 14..42 | 96 | <- | Plus |
3L | 5540491..5540559 | 43..111 | 100 | <- | Plus |
3L | 5540620..5540886 | 112..378 | 100 | <- | Plus |
3L | 5540952..5541014 | 379..441 | 100 | <- | Plus |
3L | 5541079..5541267 | 442..630 | 100 | <- | Plus |
3L | 5541334..5541372 | 631..669 | 100 | <- | Plus |
3L | 5544972..5545101 | 670..799 | 100 | <- | Plus |
3L | 5550784..5550807 | 800..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:42 Download gff for
BS08746.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5533319..5533348 | 14..42 | 96 | <- | Plus |
arm_3L | 5533591..5533659 | 43..111 | 100 | <- | Plus |
arm_3L | 5533720..5533986 | 112..378 | 100 | <- | Plus |
arm_3L | 5534052..5534114 | 379..441 | 100 | <- | Plus |
arm_3L | 5534179..5534367 | 442..630 | 100 | <- | Plus |
arm_3L | 5534434..5534472 | 631..669 | 100 | <- | Plus |
arm_3L | 5538072..5538201 | 670..799 | 100 | <- | Plus |
arm_3L | 5543884..5543907 | 800..823 | 100 | | Plus |
BS08746.5prime Sequence
837 bp (819 high quality bases) assembled on 2006-01-11
> BS08746.5prime
GAAGTTATCAGTCGACATGGCGCGTGCAGCTCTGTGCATGGCCGTCGCAT
GCATTTTCTTGCAATGCGTCTACTCTGCTAAGTTCGATGAGCAGAACCGT
CGTCTAATTCTCGACATTGACGACCAAAAGACAACGAACCGTCAGTACTA
TTCGTCAAACATTGACACAAATAACGGTAAATATAATGGCAATGGCGGAC
GCTATAACGGTATTAACGATGGTCGGTATTATCACGATGATTCGGGCAAA
TATGTTCACGTTGAAGGCCCCACTGGACCACCGGCACCCCCATATGTCCA
CGTTGTTGGACCCGAGGGAGGATTCGGCGGAAATGGCGGCAAGGGAGACG
GCGGCGGCGTAGGCCCCGGCGGCCCAGGCGGACCTAAAGGACCCGGCGGC
CCCAAGGGACCCAATGGACCCAACGGACCCCCCGGCCCACCTGGACCACC
CGGACCACCTGGACCTCCCGGACCCAAGGGACCCACTAAGCCTGGACCTT
TCGGACCACCGGGACCACCGGGACCACCCGGCCCACCTGGACCCACTCGT
CCTGGGCCCTACGGACCTCCCGGACCCCCCGGACCAACAGGCCCCACTCG
TCCCGGACCACCAGGACCACCAGGCCCCACTCGTCCCGGACCACCAGGAC
CACCAGGCCCCACTCGTCCTGGCCCACCAGGCCCCACTCGGCCCGGTCCA
CCAGGCCCCACTCGTCCCGGCCCACCAGGACCCTCTCCCAACGATCCTCG
TTACTCGGACAAGGAGACACCCGGCTATCTGCCACCAAACCAACCGGCCA
AAGGTCCCGGCTATCACTATTGAAAGCTTTCTAGACC
BS08746.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10625-PA | 807 | CG10625-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
CG10625-PD | 807 | CG10625-RD | 1..807 | 17..823 | 4035 | 100 | Plus |
CG10625-PC | 2049 | CG10625-RC | 1397..2049 | 171..823 | 3265 | 100 | Plus |
CG10625-PB | 2049 | CG10625-RB | 1397..2049 | 171..823 | 3265 | 100 | Plus |
CG10625-PC | 2049 | CG10625-RC | 1..156 | 17..172 | 780 | 100 | Plus |
CG10625-PB | 2049 | CG10625-RB | 1..156 | 17..172 | 780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:35:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10625-RD | 2428 | CG10625-RD | 353..1159 | 17..823 | 4035 | 100 | Plus |
CG10625-RA | 2212 | CG10625-RA | 137..943 | 17..823 | 4035 | 100 | Plus |
CG10625-RJ | 3171 | CG10625-RJ | 353..1133 | 17..797 | 3905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5540619..5540887 | 729..461 | 1345 | 100 | Minus |
3L | 28110227 | 3L | 5541078..5541268 | 399..209 | 955 | 100 | Minus |
3L | 28110227 | 3L | 5544968..5545102 | 174..40 | 660 | 99.3 | Minus |
3L | 28110227 | 3L | 5540635..5540780 | 737..601 | 380 | 85.6 | Minus |
3L | 28110227 | 3L | 5540619..5540747 | 705..568 | 370 | 86.2 | Minus |
3L | 28110227 | 3L | 5540491..5540563 | 797..725 | 365 | 100 | Minus |
3L | 28110227 | 3L | 5541332..5541372 | 211..171 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:35:16 has no hits.
BS08746.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:01 Download gff for
BS08746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-PD | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:31 Download gff for
BS08746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-PD | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:58:30 Download gff for
BS08746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 137..947 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:33 Download gff for
BS08746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 137..947 | 17..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:33 Download gff for
BS08746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5540219..5540248 | 798..826 | 96 | <- | Minus |
3L | 5540491..5540559 | 729..797 | 100 | <- | Minus |
3L | 5540620..5540886 | 462..728 | 100 | <- | Minus |
3L | 5540952..5541014 | 399..461 | 100 | <- | Minus |
3L | 5541079..5541267 | 210..398 | 100 | <- | Minus |
3L | 5541334..5541372 | 171..209 | 100 | <- | Minus |
3L | 5544972..5545101 | 41..170 | 100 | <- | Minus |
3L | 5550784..5550807 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:58:30 Download gff for
BS08746.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5533319..5533348 | 798..826 | 96 | <- | Minus |
arm_3L | 5533591..5533659 | 729..797 | 100 | <- | Minus |
arm_3L | 5533720..5533986 | 462..728 | 100 | <- | Minus |
arm_3L | 5534052..5534114 | 399..461 | 100 | <- | Minus |
arm_3L | 5534179..5534367 | 210..398 | 100 | <- | Minus |
arm_3L | 5534434..5534472 | 171..209 | 100 | <- | Minus |
arm_3L | 5538072..5538201 | 41..170 | 100 | <- | Minus |
arm_3L | 5543884..5543907 | 17..40 | 100 | | Minus |
BS08746.complete Sequence
839 bp (839 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636254
> BS08746.complete
GAAGTTATCAGTCGACATGGCGCGTGCAGCTCTGTGCATGGCCGTCGCAT
GCATTTTCTTGCAATGCGTCTACTCTGCTAAGTTCGATGAGCAGAACCGT
CGTCTAATTCTCGACATTGACGACCAAAAGACAACGAACCGTCAGTACTA
TTCGTCAAACATTGACACAAATAACGGTAAATATAATGGCAATGGCGGAC
GCTATAACGGTATTAACGATGGTCGGTATTATCACGATGATTCGGGCAAA
TATGTTCACGTTGAAGGCCCCACTGGACCACCGGCACCCCCATATGTCCA
CGTTGTTGGACCCGAGGGAGGATTCGGCGGAAATGGCGGCAAGGGAGACG
GCGGCGGCGTAGGCCCCGGCGGCCCAGGCGGACCTAAAGGACCCGGCGGC
CCCAAGGGACCCAATGGACCCAACGGACCCCCCGGCCCACCTGGACCACC
CGGACCACCTGGACCTCCCGGACCCAAGGGACCCACTAAGCCTGGACCTT
TCGGACCACCGGGACCACCGGGACCACCCGGCCCACCTGGACCCACTCGT
CCTGGGCCCTACGGACCTCCCGGACCCCCCGGACCAACAGGCCCCACTCG
TCCCGGACCACCAGGACCACCAGGCCCCACTCGTCCCGGACCACCAGGAC
CACCAGGCCCCACTCGTCCTGGCCCACCAGGCCCCACTCGGCCCGGTCCA
CCAGGCCCCACTCGTCCCGGCCCACCAGGACCCTCTCCCAACGATCCTCG
TTACTCGGACAAGGAGACACCCGGCTATCTGCCACCAAACCAACCGGCCA
AAGGTCCCGGCTATCACTATTGAAAGCTTTCTAGACCAT
BS08746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10625-RD | 807 | CG10625-PD | 1..807 | 17..823 | 4035 | 100 | Plus |
CG10625-RA | 807 | CG10625-PA | 1..807 | 17..823 | 4035 | 100 | Plus |
CG10625-RJ | 2259 | CG10625-PJ | 1..781 | 17..797 | 3905 | 100 | Plus |
CG10625-RD | 807 | CG10625-PD | 552..697 | 601..737 | 380 | 85.6 | Plus |
CG10625-RD | 807 | CG10625-PD | 585..721 | 568..713 | 380 | 85.6 | Plus |
CG10625-RA | 807 | CG10625-PA | 552..697 | 601..737 | 380 | 85.6 | Plus |
CG10625-RA | 807 | CG10625-PA | 585..721 | 568..713 | 380 | 85.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10625-RD | 2428 | CG10625-RD | 353..1159 | 17..823 | 4035 | 100 | Plus |
CG10625-RA | 2212 | CG10625-RA | 137..943 | 17..823 | 4035 | 100 | Plus |
CG10625-RJ | 3171 | CG10625-RJ | 353..1133 | 17..797 | 3905 | 100 | Plus |
CG10625-RD | 2428 | CG10625-RD | 904..1049 | 601..737 | 380 | 85.6 | Plus |
CG10625-RD | 2428 | CG10625-RD | 937..1073 | 568..713 | 380 | 85.6 | Plus |
CG10625-RA | 2212 | CG10625-RA | 721..857 | 568..713 | 380 | 85.6 | Plus |
CG10625-RA | 2212 | CG10625-RA | 688..833 | 601..737 | 380 | 85.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5540619..5540887 | 729..461 | 1345 | 100 | Minus |
3L | 28110227 | 3L | 5541078..5541268 | 399..209 | 955 | 100 | Minus |
3L | 28110227 | 3L | 5544968..5545102 | 174..40 | 660 | 99.3 | Minus |
3L | 28110227 | 3L | 5540635..5540780 | 737..601 | 380 | 85.6 | Minus |
3L | 28110227 | 3L | 5540619..5540747 | 705..568 | 370 | 86.2 | Minus |
3L | 28110227 | 3L | 5540491..5540563 | 797..725 | 365 | 100 | Minus |
3L | 28110227 | 3L | 5541332..5541372 | 211..171 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:13:59 has no hits.
BS08746.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:39 Download gff for
BS08746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RB | 1..158 | 17..175 | 98 | <- | Plus |
CG10625-RB | 1402..2049 | 176..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:32 Download gff for
BS08746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 135..940 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:44 Download gff for
BS08746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 137..942 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:39 Download gff for
BS08746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RB | 135..292 | 17..175 | 98 | <- | Plus |
CG10625-RB | 1536..2187 | 176..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:00 Download gff for
BS08746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10625-RA | 137..942 | 17..822 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:00 Download gff for
BS08746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5550784..5550807 | 17..40 | 100 | | Minus |
3L | 5541079..5541267 | 210..398 | 100 | <- | Minus |
3L | 5541334..5541372 | 171..209 | 100 | <- | Minus |
3L | 5540224..5540248 | 798..822 | 100 | <- | Minus |
3L | 5540491..5540559 | 729..797 | 100 | <- | Minus |
3L | 5540620..5540886 | 462..728 | 100 | <- | Minus |
3L | 5540952..5541014 | 399..461 | 100 | <- | Minus |
3L | 5544972..5545101 | 41..170 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:44 Download gff for
BS08746.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5533324..5533348 | 798..822 | 100 | <- | Minus |
arm_3L | 5533591..5533659 | 729..797 | 100 | <- | Minus |
arm_3L | 5533720..5533986 | 462..728 | 100 | <- | Minus |
arm_3L | 5534052..5534114 | 399..461 | 100 | <- | Minus |
arm_3L | 5534179..5534367 | 210..398 | 100 | <- | Minus |
arm_3L | 5534434..5534472 | 171..209 | 100 | <- | Minus |
arm_3L | 5538072..5538201 | 41..170 | 100 | <- | Minus |
arm_3L | 5543884..5543907 | 17..40 | 100 | | Minus |
BS08746.pep Sequence
Translation from 16 to 822
> BS08746.pep
MARAALCMAVACIFLQCVYSAKFDEQNRRLILDIDDQKTTNRQYYSSNID
TNNGKYNGNGGRYNGINDGRYYHDDSGKYVHVEGPTGPPAPPYVHVVGPE
GGFGGNGGKGDGGGVGPGGPGGPKGPGGPKGPNGPNGPPGPPGPPGPPGP
PGPKGPTKPGPFGPPGPPGPPGPPGPTRPGPYGPPGPPGPTGPTRPGPPG
PPGPTRPGPPGPPGPTRPGPPGPTRPGPPGPTRPGPPGPSPNDPRYSDKE
TPGYLPPNQPAKGPGYHY*
BS08746.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10625-PD | 268 | CG10625-PD | 1..268 | 1..268 | 1602 | 100 | Plus |
CG10625-PA | 268 | CG10625-PA | 1..268 | 1..268 | 1602 | 100 | Plus |
CG10625-PJ | 752 | CG10625-PJ | 1..262 | 1..262 | 1557 | 99.6 | Plus |
CG10625-PI | 766 | CG10625-PI | 1..262 | 1..262 | 1557 | 99.6 | Plus |
CG10625-PB | 682 | CG10625-PB | 466..682 | 52..268 | 1333 | 99.5 | Plus |
CG10625-PJ | 752 | CG10625-PJ | 84..172 | 169..265 | 157 | 44.9 | Plus |
CG10625-PI | 766 | CG10625-PI | 84..172 | 169..265 | 157 | 44.9 | Plus |