Clone BS08746 Report

Search the DGRC for BS08746

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG10625-RA
Protein status:BS08746.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08746.3prime Sequence

837 bp (831 high quality bases) assembled on 2006-01-11

> BS08746.3prime
ATGGTCTAGAAAGCTTTCAATAGTGATAGCCGGGACCTTTGGCCGGTTGG
TTTGGTGGCAGATAGCCGGGTGTCTCCTTGTCCGAGTAACGAGGATCGTT
GGGAGAGGGTCCTGGTGGGCCGGGACGAGTGGGGCCTGGTGGACCGGGCC
GAGTGGGGCCTGGTGGGCCAGGACGAGTGGGGCCTGGTGGTCCTGGTGGT
CCGGGACGAGTGGGGCCTGGTGGTCCTGGTGGTCCGGGACGAGTGGGGCC
TGTTGGTCCGGGGGGTCCGGGAGGTCCGTAGGGCCCAGGACGAGTGGGTC
CAGGTGGGCCGGGTGGTCCCGGTGGTCCCGGTGGTCCGAAAGGTCCAGGC
TTAGTGGGTCCCTTGGGTCCGGGAGGTCCAGGTGGTCCGGGTGGTCCAGG
TGGGCCGGGGGGTCCGTTGGGTCCATTGGGTCCCTTGGGGCCGCCGGGTC
CTTTAGGTCCGCCTGGGCCGCCGGGGCCTACGCCGCCGCCGTCTCCCTTG
CCGCCATTTCCGCCGAATCCTCCCTCGGGTCCAACAACGTGGACATATGG
GGGTGCCGGTGGTCCAGTGGGGCCTTCAACGTGAACATATTTGCCCGAAT
CATCGTGATAATACCGACCATCGTTAATACCGTTATAGCGTCCGCCATTG
CCATTATATTTACCGTTATTTGTGTCAATGTTTGACGAATAGTACTGACG
GTTCGTTGTCTTTTGGTCGTCAATGTCGAGAATTAGACGACGGTTCTGCT
CATCGAACTTAGCAGAGTAGACGCATTGCAAGAAAATGCATGCGACGGCC
ATGCACAGAGCTGCACGCGCCATGTCGACTGATAACT

BS08746.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10625-PA 807 CG10625-RA 1..807 823..17 4035 100 Minus
CG10625-PD 807 CG10625-RD 1..807 823..17 4035 100 Minus
CG10625-PC 2049 CG10625-RC 1397..2049 669..17 3265 100 Minus
CG10625-PB 2049 CG10625-RB 1397..2049 669..17 3265 100 Minus
CG10625-PC 2049 CG10625-RC 1..156 823..668 780 100 Minus
CG10625-PB 2049 CG10625-RB 1..156 823..668 780 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG10625-RD 2428 CG10625-RD 353..1159 823..17 4035 100 Minus
CG10625-RA 2212 CG10625-RA 137..943 823..17 4035 100 Minus
CG10625-RJ 3171 CG10625-RJ 353..1133 823..43 3905 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5540619..5540887 111..379 1345 100 Plus
3L 28110227 3L 5541078..5541268 441..631 955 100 Plus
3L 28110227 3L 5544968..5545102 666..800 660 99.3 Plus
3L 28110227 3L 5540635..5540780 103..239 380 85.6 Plus
3L 28110227 3L 5540619..5540747 135..272 370 86.2 Plus
3L 28110227 3L 5540491..5540563 43..115 365 100 Plus
3L 28110227 3L 5541332..5541372 629..669 205 100 Plus
Blast to na_te.dros performed on 2015-02-08 14:07:44 has no hits.

BS08746.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:00 Download gff for BS08746.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-PD 1..807 17..823 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:30 Download gff for BS08746.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-PD 1..807 17..823 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:42 Download gff for BS08746.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 137..947 14..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:33:46 Download gff for BS08746.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 137..947 14..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:33:46 Download gff for BS08746.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5540219..5540248 14..42 96 <- Plus
3L 5540491..5540559 43..111 100 <- Plus
3L 5540620..5540886 112..378 100 <- Plus
3L 5540952..5541014 379..441 100 <- Plus
3L 5541079..5541267 442..630 100 <- Plus
3L 5541334..5541372 631..669 100 <- Plus
3L 5544972..5545101 670..799 100 <- Plus
3L 5550784..5550807 800..823 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:42 Download gff for BS08746.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5533319..5533348 14..42 96 <- Plus
arm_3L 5533591..5533659 43..111 100 <- Plus
arm_3L 5533720..5533986 112..378 100 <- Plus
arm_3L 5534052..5534114 379..441 100 <- Plus
arm_3L 5534179..5534367 442..630 100 <- Plus
arm_3L 5534434..5534472 631..669 100 <- Plus
arm_3L 5538072..5538201 670..799 100 <- Plus
arm_3L 5543884..5543907 800..823 100   Plus

BS08746.5prime Sequence

837 bp (819 high quality bases) assembled on 2006-01-11

> BS08746.5prime
GAAGTTATCAGTCGACATGGCGCGTGCAGCTCTGTGCATGGCCGTCGCAT
GCATTTTCTTGCAATGCGTCTACTCTGCTAAGTTCGATGAGCAGAACCGT
CGTCTAATTCTCGACATTGACGACCAAAAGACAACGAACCGTCAGTACTA
TTCGTCAAACATTGACACAAATAACGGTAAATATAATGGCAATGGCGGAC
GCTATAACGGTATTAACGATGGTCGGTATTATCACGATGATTCGGGCAAA
TATGTTCACGTTGAAGGCCCCACTGGACCACCGGCACCCCCATATGTCCA
CGTTGTTGGACCCGAGGGAGGATTCGGCGGAAATGGCGGCAAGGGAGACG
GCGGCGGCGTAGGCCCCGGCGGCCCAGGCGGACCTAAAGGACCCGGCGGC
CCCAAGGGACCCAATGGACCCAACGGACCCCCCGGCCCACCTGGACCACC
CGGACCACCTGGACCTCCCGGACCCAAGGGACCCACTAAGCCTGGACCTT
TCGGACCACCGGGACCACCGGGACCACCCGGCCCACCTGGACCCACTCGT
CCTGGGCCCTACGGACCTCCCGGACCCCCCGGACCAACAGGCCCCACTCG
TCCCGGACCACCAGGACCACCAGGCCCCACTCGTCCCGGACCACCAGGAC
CACCAGGCCCCACTCGTCCTGGCCCACCAGGCCCCACTCGGCCCGGTCCA
CCAGGCCCCACTCGTCCCGGCCCACCAGGACCCTCTCCCAACGATCCTCG
TTACTCGGACAAGGAGACACCCGGCTATCTGCCACCAAACCAACCGGCCA
AAGGTCCCGGCTATCACTATTGAAAGCTTTCTAGACC

BS08746.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10625-PA 807 CG10625-RA 1..807 17..823 4035 100 Plus
CG10625-PD 807 CG10625-RD 1..807 17..823 4035 100 Plus
CG10625-PC 2049 CG10625-RC 1397..2049 171..823 3265 100 Plus
CG10625-PB 2049 CG10625-RB 1397..2049 171..823 3265 100 Plus
CG10625-PC 2049 CG10625-RC 1..156 17..172 780 100 Plus
CG10625-PB 2049 CG10625-RB 1..156 17..172 780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10625-RD 2428 CG10625-RD 353..1159 17..823 4035 100 Plus
CG10625-RA 2212 CG10625-RA 137..943 17..823 4035 100 Plus
CG10625-RJ 3171 CG10625-RJ 353..1133 17..797 3905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5540619..5540887 729..461 1345 100 Minus
3L 28110227 3L 5541078..5541268 399..209 955 100 Minus
3L 28110227 3L 5544968..5545102 174..40 660 99.3 Minus
3L 28110227 3L 5540635..5540780 737..601 380 85.6 Minus
3L 28110227 3L 5540619..5540747 705..568 370 86.2 Minus
3L 28110227 3L 5540491..5540563 797..725 365 100 Minus
3L 28110227 3L 5541332..5541372 211..171 205 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:35:16 has no hits.

BS08746.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:01 Download gff for BS08746.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-PD 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:31 Download gff for BS08746.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-PD 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:58:30 Download gff for BS08746.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 137..947 17..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:33 Download gff for BS08746.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 137..947 17..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:33 Download gff for BS08746.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5540219..5540248 798..826 96 <- Minus
3L 5540491..5540559 729..797 100 <- Minus
3L 5540620..5540886 462..728 100 <- Minus
3L 5540952..5541014 399..461 100 <- Minus
3L 5541079..5541267 210..398 100 <- Minus
3L 5541334..5541372 171..209 100 <- Minus
3L 5544972..5545101 41..170 100 <- Minus
3L 5550784..5550807 17..40 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:58:30 Download gff for BS08746.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5533319..5533348 798..826 96 <- Minus
arm_3L 5533591..5533659 729..797 100 <- Minus
arm_3L 5533720..5533986 462..728 100 <- Minus
arm_3L 5534052..5534114 399..461 100 <- Minus
arm_3L 5534179..5534367 210..398 100 <- Minus
arm_3L 5534434..5534472 171..209 100 <- Minus
arm_3L 5538072..5538201 41..170 100 <- Minus
arm_3L 5543884..5543907 17..40 100   Minus

BS08746.complete Sequence

839 bp (839 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636254

> BS08746.complete
GAAGTTATCAGTCGACATGGCGCGTGCAGCTCTGTGCATGGCCGTCGCAT
GCATTTTCTTGCAATGCGTCTACTCTGCTAAGTTCGATGAGCAGAACCGT
CGTCTAATTCTCGACATTGACGACCAAAAGACAACGAACCGTCAGTACTA
TTCGTCAAACATTGACACAAATAACGGTAAATATAATGGCAATGGCGGAC
GCTATAACGGTATTAACGATGGTCGGTATTATCACGATGATTCGGGCAAA
TATGTTCACGTTGAAGGCCCCACTGGACCACCGGCACCCCCATATGTCCA
CGTTGTTGGACCCGAGGGAGGATTCGGCGGAAATGGCGGCAAGGGAGACG
GCGGCGGCGTAGGCCCCGGCGGCCCAGGCGGACCTAAAGGACCCGGCGGC
CCCAAGGGACCCAATGGACCCAACGGACCCCCCGGCCCACCTGGACCACC
CGGACCACCTGGACCTCCCGGACCCAAGGGACCCACTAAGCCTGGACCTT
TCGGACCACCGGGACCACCGGGACCACCCGGCCCACCTGGACCCACTCGT
CCTGGGCCCTACGGACCTCCCGGACCCCCCGGACCAACAGGCCCCACTCG
TCCCGGACCACCAGGACCACCAGGCCCCACTCGTCCCGGACCACCAGGAC
CACCAGGCCCCACTCGTCCTGGCCCACCAGGCCCCACTCGGCCCGGTCCA
CCAGGCCCCACTCGTCCCGGCCCACCAGGACCCTCTCCCAACGATCCTCG
TTACTCGGACAAGGAGACACCCGGCTATCTGCCACCAAACCAACCGGCCA
AAGGTCCCGGCTATCACTATTGAAAGCTTTCTAGACCAT

BS08746.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10625-RD 807 CG10625-PD 1..807 17..823 4035 100 Plus
CG10625-RA 807 CG10625-PA 1..807 17..823 4035 100 Plus
CG10625-RJ 2259 CG10625-PJ 1..781 17..797 3905 100 Plus
CG10625-RD 807 CG10625-PD 552..697 601..737 380 85.6 Plus
CG10625-RD 807 CG10625-PD 585..721 568..713 380 85.6 Plus
CG10625-RA 807 CG10625-PA 552..697 601..737 380 85.6 Plus
CG10625-RA 807 CG10625-PA 585..721 568..713 380 85.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10625-RD 2428 CG10625-RD 353..1159 17..823 4035 100 Plus
CG10625-RA 2212 CG10625-RA 137..943 17..823 4035 100 Plus
CG10625-RJ 3171 CG10625-RJ 353..1133 17..797 3905 100 Plus
CG10625-RD 2428 CG10625-RD 904..1049 601..737 380 85.6 Plus
CG10625-RD 2428 CG10625-RD 937..1073 568..713 380 85.6 Plus
CG10625-RA 2212 CG10625-RA 721..857 568..713 380 85.6 Plus
CG10625-RA 2212 CG10625-RA 688..833 601..737 380 85.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5540619..5540887 729..461 1345 100 Minus
3L 28110227 3L 5541078..5541268 399..209 955 100 Minus
3L 28110227 3L 5544968..5545102 174..40 660 99.3 Minus
3L 28110227 3L 5540635..5540780 737..601 380 85.6 Minus
3L 28110227 3L 5540619..5540747 705..568 370 86.2 Minus
3L 28110227 3L 5540491..5540563 797..725 365 100 Minus
3L 28110227 3L 5541332..5541372 211..171 205 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:13:59 has no hits.

BS08746.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:39 Download gff for BS08746.complete
Subject Subject Range Query Range Percent Splice Strand
CG10625-RB 1..158 17..175 98 <- Plus
CG10625-RB 1402..2049 176..823 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:32 Download gff for BS08746.complete
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 135..940 17..822 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:44 Download gff for BS08746.complete
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 137..942 17..822 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:39 Download gff for BS08746.complete
Subject Subject Range Query Range Percent Splice Strand
CG10625-RB 135..292 17..175 98 <- Plus
CG10625-RB 1536..2187 176..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:00 Download gff for BS08746.complete
Subject Subject Range Query Range Percent Splice Strand
CG10625-RA 137..942 17..822 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:00 Download gff for BS08746.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5550784..5550807 17..40 100   Minus
3L 5541079..5541267 210..398 100 <- Minus
3L 5541334..5541372 171..209 100 <- Minus
3L 5540224..5540248 798..822 100 <- Minus
3L 5540491..5540559 729..797 100 <- Minus
3L 5540620..5540886 462..728 100 <- Minus
3L 5540952..5541014 399..461 100 <- Minus
3L 5544972..5545101 41..170 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:44 Download gff for BS08746.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5533324..5533348 798..822 100 <- Minus
arm_3L 5533591..5533659 729..797 100 <- Minus
arm_3L 5533720..5533986 462..728 100 <- Minus
arm_3L 5534052..5534114 399..461 100 <- Minus
arm_3L 5534179..5534367 210..398 100 <- Minus
arm_3L 5534434..5534472 171..209 100 <- Minus
arm_3L 5538072..5538201 41..170 100 <- Minus
arm_3L 5543884..5543907 17..40 100   Minus

BS08746.pep Sequence

Translation from 16 to 822

> BS08746.pep
MARAALCMAVACIFLQCVYSAKFDEQNRRLILDIDDQKTTNRQYYSSNID
TNNGKYNGNGGRYNGINDGRYYHDDSGKYVHVEGPTGPPAPPYVHVVGPE
GGFGGNGGKGDGGGVGPGGPGGPKGPGGPKGPNGPNGPPGPPGPPGPPGP
PGPKGPTKPGPFGPPGPPGPPGPPGPTRPGPYGPPGPPGPTGPTRPGPPG
PPGPTRPGPPGPPGPTRPGPPGPTRPGPPGPTRPGPPGPSPNDPRYSDKE
TPGYLPPNQPAKGPGYHY*

BS08746.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10625-PD 268 CG10625-PD 1..268 1..268 1602 100 Plus
CG10625-PA 268 CG10625-PA 1..268 1..268 1602 100 Plus
CG10625-PJ 752 CG10625-PJ 1..262 1..262 1557 99.6 Plus
CG10625-PI 766 CG10625-PI 1..262 1..262 1557 99.6 Plus
CG10625-PB 682 CG10625-PB 466..682 52..268 1333 99.5 Plus
CG10625-PJ 752 CG10625-PJ 84..172 169..265 157 44.9 Plus
CG10625-PI 766 CG10625-PI 84..172 169..265 157 44.9 Plus