Clone BS08749 Report

Search the DGRC for BS08749

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptJhI-21-RA
Protein status:BS08749.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08749.3prime Sequence

879 bp (790 high quality bases) assembled on 2006-01-11

> BS08749.3prime
ATGGTCTAGAAAGCTTCTAGTTAATAGCCTCATTCGATTCGATAATGGTG
GTATTGAAGATGGCCCGGCAAATCTCCACTACGGAATTGGACAATCGGCC
GTAGCACTTGGGCTTCTTTTTTCGGGCGATGAAGGCGTAGTAGAACGGAA
TGCCAGCCAGGGTTATGCCGATGCCAATGAGCAGATTTTGTGGCTCCTCC
AAATTGGGCAGCAGTACGAGTGTCACGCAGCTTACCATGAAGGTGATGGG
CAGCGCAAGATGGACTTTAATGGGTCGGGGCAAGTCGGGCCTCTTATGCC
GGAGCCACAACATTCCGGCTATGCTGGCCACCACTGAGAGCCAGAGCACC
GAGCTGAAGTAGTTGATCAACTGGTACACGTTATCCGTGAGCAGCATGAG
CAGCGACATAAGACACGTGAAAATCAGGGAGGGAATGGGCGTCTGTTGTT
TCACGTGGAACAGCTGGAAAAACTTGGGCAAATGCCCCTCCTGAGCCCCA
GTAGCGAAAAGGCGCGCCGATGTGAAGAGCACCCCGTTGACGCCACCAAA
TGTGCTTAGCGCCACGAAAATGGGCACCATGAAGGCCAGCGGTCCGAACA
CTCGGTTTCCAAAGGTCACCGCCACGGCCAGCGAACTGAGCATCTCCGGC
TTGTTTACCACGGCGAAATAGGCCAAGTTGACCAGAACATAGATGCTCGT
GACCAGGGGCATGGCTATCCAAATGGCGCGCGGCAGATTCTTGTATGGAT
CCTGTAGCTCCTCCGTCACAAAGTTTAAGTAGTTCCAGCCACCAAAGGCA
AACAGACCGGAGTAGAAGGCGTAGCCAATGTTGCGGGCCGTGTAGATACC
CTCCCACGGATTTCTGAAGTTCTCCAGCT

BS08749.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12317-PA 1503 JhI-21-RA 641..1503 879..17 4315 100 Minus
CG12317-PB 1503 JhI-21-RB 641..1503 879..17 4315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-21-RC 2149 CG12317-RC 812..1674 879..17 4315 100 Minus
JhI-21-RE 2182 CG12317-RE 845..1707 879..17 4315 100 Minus
JhI-21-RD 2119 CG12317-RD 782..1644 879..17 4315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12052764..12053088 416..740 1625 100 Plus
2L 23513712 2L 12052230..12052505 17..292 1380 100 Plus
2L 23513712 2L 12053656..12053795 740..879 700 100 Plus
2L 23513712 2L 12052559..12052685 290..416 635 100 Plus
3R 32079331 3R 27110176..27110337 659..820 255 77.2 Plus
Blast to na_te.dros performed on 2015-02-10 19:05:40 has no hits.

BS08749.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:06 Download gff for BS08749.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12317-PA 641..1503 17..879 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:39 Download gff for BS08749.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12317-PB 641..1503 17..879 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:56:42 Download gff for BS08749.3prime
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RB 762..1626 13..879 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:15 Download gff for BS08749.3prime
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RD 782..1646 13..879 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:15 Download gff for BS08749.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12052228..12052503 13..290 99 <- Plus
2L 12052560..12052684 291..415 100 <- Plus
2L 12052764..12053088 416..740 100 <- Plus
2L 12053657..12053795 741..879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:56:42 Download gff for BS08749.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12052228..12052503 13..290 99 <- Plus
arm_2L 12052560..12052684 291..415 100 <- Plus
arm_2L 12052764..12053088 416..740 100 <- Plus
arm_2L 12053657..12053795 741..879 100   Plus

BS08749.5prime Sequence

919 bp (772 high quality bases) assembled on 2006-01-11

> BS08749.5prime
GAAGTTATCAGTCGACATGACGGACCGATATGCCAATGGAGTGACCACCA
GCCTGGTCGAGCCCACAAATGGATGCGCCGCGCCGGGTAATCCAAATCCC
GCTGATGGCGAGGAGAAGATTGTCCTCAAGCGGAAGCTAACACTCATCAA
TGGAGTGGCCATCATAGTGGGCACCATCATTGGATCGGGCATCTTCATTG
CTCCCACGGGAGTCTTTATTTACACCGAATCCGTGGGAAGCTCCCTTTTG
ATTTGGCTGACTTGCGGCATTTTATCGACGATCGGAGCTCTGTGCTACGC
GGAACTGGGCACATGCATCACAAGATCTGGCGGGGATTACGCCTACCTGC
TGGTGTCCTTTGGACCGCTGGTGGGATTCCTTCGCCTCTGGATCGCACTG
CTCATCATCCGGCCAACCACGCAGACCATTGTGGCTCTATCTTTTGCCCA
TTATGCGGTCAAGCCATTCTTTCCGGAATGCGATCCCCCACAGAATGCGG
TGAAACTGCTGGCTGCCATATGTCTAACTCTGCTCACCACAATCAATTGC
CTGTCGGTGAAGGTGTCCATGAAAGTGCAGGATGTGTTCACGGTGGGCAA
GCTGCTGGCCCTCATCATGATTATCCTGTCCGGACTGTACTACATGGCCA
CTGGCGAGCTGGAGAACTTCAGAAATCCGTGGGAGGGTATCTACACGGCC
CGCAACATTGGCTACGCCTTCTACTCCGGTCTGTTTGCCTTTGGTGGCTG
GAACTACTTAAACTTTGTGACGGAGGAGCTACAGGATCCATACAAGAATC
TGCCGCGCGCCATTTGGATAGCCATGCCCCTGGTCACGAGCATCTATGTT
CTGGTCAACTTGGCCTATTTCGCCGTGGTAAACAAGCGGAGATGCTCAGT
TCGCTGGCCGTGGCGGTGA

BS08749.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12317-PA 1503 JhI-21-RA 1..871 17..887 4355 100 Plus
CG12317-PB 1503 JhI-21-RB 1..871 17..887 4355 100 Plus
CG12317-PA 1503 JhI-21-RA 872..904 887..919 165 100 Plus
CG12317-PB 1503 JhI-21-RB 872..904 887..919 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-21-RC 2149 CG12317-RC 171..1075 16..919 4500 99.9 Plus
JhI-21-RE 2182 CG12317-RE 204..1108 16..919 4500 99.9 Plus
JhI-21-RD 2119 CG12317-RD 141..1045 16..919 4500 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12053656..12053924 796..528 1345 100 Minus
2L 23513712 2L 12055085..12055297 228..16 1065 100 Minus
2L 23513712 2L 12054303..12054498 424..229 980 100 Minus
2L 23513712 2L 12052964..12053088 919..796 575 99.2 Minus
2L 23513712 2L 12053982..12054086 527..423 525 100 Minus
3R 32079331 3R 27110176..27110337 877..716 255 77.2 Minus
Blast to na_te.dros performed on 2015-02-11 13:23:56 has no hits.

BS08749.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:07 Download gff for BS08749.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12317-PA 1..903 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:41 Download gff for BS08749.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12317-PB 1..903 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:23:07 Download gff for BS08749.5prime
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RB 114..1024 9..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:21 Download gff for BS08749.5prime
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RD 134..1044 9..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:21 Download gff for BS08749.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12052965..12053088 796..918 99 <- Minus
2L 12053657..12053924 528..795 100 <- Minus
2L 12053982..12054084 425..527 100 <- Minus
2L 12054303..12054498 229..424 100 <- Minus
2L 12055085..12055304 9..228 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:23:07 Download gff for BS08749.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12052965..12053088 796..918 99 <- Minus
arm_2L 12053657..12053924 528..795 100 <- Minus
arm_2L 12053982..12054084 425..527 100 <- Minus
arm_2L 12054303..12054498 229..424 100 <- Minus
arm_2L 12055085..12055304 9..228 98   Minus

BS08749.complete Sequence

1535 bp (1535 high quality bases) assembled on 2006-01-25

> BS08749.complete
GAAGTTATCAGTCGACATGACGGACCGATATGCCAATGGAGTGACCACCA
GCCTGGTCGAGCCCACAAATGGATGCGCCGCGCCGGGTAATCCAAATCCC
GCTGATGGCGAGGAGAAGATTGTCCTCAAGCGGAAGCTAACACTCATCAA
TGGAGTGGCCATCATAGTGGGCACCATCATTGGATCGGGCATCTTCATTG
CTCCCACGGGAGTCTTTATTTACACCGAATCCGTGGGAAGCTCCCTTTTG
ATTTGGCTGACTTGCGGCATTTTATCGACGATCGGAGCTCTGTGCTACGC
GGAACTGGGCACATGCATCACAAGATCTGGCGGGGATTACGCCTACCTGC
TGGTGTCCTTTGGACCGCTGGTGGGATTCCTTCGCCTCTGGATCGCACTG
CTCATCATCCGGCCAACCACGCAGACCATTGTGGCTCTATCTTTTGCCCA
TTATGCGGTCAAGCCATTCTTTCCGGAATGCGATCCCCCACAGAATGCGG
TGAAACTGCTGGCTGCCATATGTCTAACTCTGCTCACCACAATCAATTGC
CTGTCGGTGAAGGTGTCCATGAAAGTGCAGGATGTGTTCACGGTGGGCAA
GCTGCTGGCCCTCATCATGATTATCCTGTCCGGACTGTACTACATGGCCA
CTGGCGAGCTGGAGAACTTCAGAAATCCGTGGGAGGGTATCTACACGGCC
CGCAACATTGGCTACGCCTTCTACTCCGGTCTGTTTGCCTTTGGTGGCTG
GAACTACTTAAACTTTGTGACGGAGGAGCTACAGGATCCATACAAGAATC
TGCCGCGCGCCATTTGGATAGCCATGCCCCTGGTCACGAGCATCTATGTT
CTGGTCAACTTGGCCTATTTCGCCGTGGTAAACAAGCCGGAGATGCTCAG
TTCGCTGGCCGTGGCGGTGACCTTTGGAAACCGAGTGTTCGGACCGCTGG
CCTTCATGGTGCCCATTTTCGTGGCGCTAAGCACATTTGGTGGCGTCAAC
GGGGTGCTCTTCACATCGGCGCGCCTTTTCGCTACTGGGGCTCAGGAGGG
GCATTTGCCCAAGTTTTTCCAGCTGTTCCACGTGAAACAACAGACGCCCA
TTCCCTCCCTGATTTTCACGTGTCTTATGTCGCTGCTCATGCTGCTCACG
GATAACGTGTACCAGTTGATCAACTACTTCAGCTCGGTGCTCTGGCTCTC
AGTGGTGGCCAGCATAGCCGGAATGTTGTGGCTCCGGCATAAGAGGCCCG
ACTTGCCCCGACCCATTAAAGTCCATCTTGCGCTGCCCATCACCTTCATG
GTAAGCTGCGTGACACTCGTACTGCTGCCCAATTTGGAGGAGCCACAAAA
TCTGCTCATTGGCATCGGCATAACCCTGGCTGGCATTCCGTTCTACTACG
CCTTCATCGCCCGAAAAAAGAAGCCCAAGTGCTACGGCCGATTGTCCAAT
TCCGTAGTGGAGATTTGCCGGGCCATCTTCAATACCACCATTATCGAATC
GAATGAGGCTATTAACTAGAAGCTTTCTAGACCAT

BS08749.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-21-RC 1503 CG12317-PC 1..1503 17..1519 7515 100 Plus
JhI-21-RE 1503 CG12317-PE 1..1503 17..1519 7515 100 Plus
JhI-21-RD 1503 CG12317-PD 1..1503 17..1519 7515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-21-RC 2149 CG12317-RC 171..1674 16..1519 7520 100 Plus
JhI-21-RE 2182 CG12317-RE 204..1707 16..1519 7520 100 Plus
JhI-21-RD 2119 CG12317-RD 141..1644 16..1519 7520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12052764..12053088 1120..796 1625 100 Minus
2L 23513712 2L 12052230..12052505 1519..1244 1380 100 Minus
2L 23513712 2L 12053656..12053924 796..528 1345 100 Minus
2L 23513712 2L 12055085..12055297 228..16 1065 100 Minus
2L 23513712 2L 12054303..12054498 424..229 980 100 Minus
2L 23513712 2L 12052559..12052685 1246..1120 635 100 Minus
2L 23513712 2L 12053982..12054086 527..423 525 100 Minus
3R 32079331 3R 27110176..27110337 877..716 255 77.2 Minus
Blast to na_te.dros performed on 2014-11-27 10:32:37 has no hits.

BS08749.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:41 Download gff for BS08749.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RB 1..1503 17..1519 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:39:12 Download gff for BS08749.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RB 111..1623 9..1523 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:51 Download gff for BS08749.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RB 122..1624 17..1519 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:41 Download gff for BS08749.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RB 111..1623 9..1523 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:38 Download gff for BS08749.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-21-RD 142..1644 17..1519 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:38 Download gff for BS08749.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12052560..12052684 1121..1245 100 <- Minus
2L 12052230..12052503 1246..1519 100 <- Minus
2L 12052764..12053088 796..1120 100 <- Minus
2L 12053657..12053924 528..795 100 <- Minus
2L 12053982..12054084 425..527 100 <- Minus
2L 12054303..12054498 229..424 100 <- Minus
2L 12055085..12055296 17..228 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:51 Download gff for BS08749.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12055085..12055296 17..228 100   Minus
arm_2L 12053657..12053924 528..795 100 <- Minus
arm_2L 12053982..12054084 425..527 100 <- Minus
arm_2L 12054303..12054498 229..424 100 <- Minus
arm_2L 12052230..12052503 1246..1519 100 <- Minus
arm_2L 12052560..12052684 1121..1245 100 <- Minus
arm_2L 12052764..12053088 796..1120 100 <- Minus

BS08749.pep Sequence

Translation from 16 to 1518

> BS08749.pep
MTDRYANGVTTSLVEPTNGCAAPGNPNPADGEEKIVLKRKLTLINGVAII
VGTIIGSGIFIAPTGVFIYTESVGSSLLIWLTCGILSTIGALCYAELGTC
ITRSGGDYAYLLVSFGPLVGFLRLWIALLIIRPTTQTIVALSFAHYAVKP
FFPECDPPQNAVKLLAAICLTLLTTINCLSVKVSMKVQDVFTVGKLLALI
MIILSGLYYMATGELENFRNPWEGIYTARNIGYAFYSGLFAFGGWNYLNF
VTEELQDPYKNLPRAIWIAMPLVTSIYVLVNLAYFAVVNKPEMLSSLAVA
VTFGNRVFGPLAFMVPIFVALSTFGGVNGVLFTSARLFATGAQEGHLPKF
FQLFHVKQQTPIPSLIFTCLMSLLMLLTDNVYQLINYFSSVLWLSVVASI
AGMLWLRHKRPDLPRPIKVHLALPITFMVSCVTLVLLPNLEEPQNLLIGI
GITLAGIPFYYAFIARKKKPKCYGRLSNSVVEICRAIFNTTIIESNEAIN
*

BS08749.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-21-PC 500 CG12317-PC 1..500 1..500 2579 100 Plus
JhI-21-PE 500 CG12317-PE 1..500 1..500 2579 100 Plus
JhI-21-PD 500 CG12317-PD 1..500 1..500 2579 100 Plus
JhI-21-PB 500 CG12317-PB 1..500 1..500 2579 100 Plus
JhI-21-PA 500 CG12317-PA 1..500 1..500 2579 100 Plus