Clone Sequence Records
BS08751.3prime Sequence
864 bp (742 high quality bases) assembled on 2006-01-11
> BS08751.3prime
ATGGTCTAGAAAGCTTCTAATCATCGATAGTGTACTCGGGCATCTTCTCG
TACTTTTGCTTGGTGGCCTCATGGGTGGTGTCCACAAGCAACACCGTGTG
CGAGTAACCCATAGTCACTTGAGGTATTTTAATGTTGTCCAACTTTGGCA
CCTCCTTGGGCACCGTCGACGACTTCTGGAACTCCCCAATGCCCAGCTCG
CCAAACGTGGGCGATGCGCCCCAAGCGATCAGTGTGTCGTCGGCCGAAAT
CATAATCGATGTATTGGCACAGCCAATGTCGGTAATGTTCCAGCCGGAAA
GATCCTGCACTGGCTTGGGGTACATATTTGCCTCGCCCGTCTTCTTATTC
TGTCCGAACAAAAACAGCAGGCCCAGCTCGTTGACGATCAGACTGAAAGT
GGAGCCGCAAAAGACGCTGCGCCCACCCCGACCCTGAGTATCGAAAAACT
TCATTAAACGCGGCACCATTTCGTCCTTGGGCTCTGCGTGTCCGAGACGC
CCGAAACCGCCAAAGCCCCAGCTATAAACGCGCTTCTTGGAGTCGATGGC
GACCGTGTGATTATTGCCGCAAGCAAAGTCAACTATCTGCACGCCATCGA
CTGGCGTTACATGACCCTCCTTGCTCTTCTCTATGTACAAAACGACCTTT
TTGGGCGACGTCTCGAAATGGAATGACAATTTGTTGGCGTTGACAAAGTA
CTTGGCGTCAGTATTGTGTCCCAACTGACCGTACTCCGGCAGCCCAAATG
TGTGCAGGCTACCTTTAATGTCCAGAATAACAGAGAACTCAGCTCCGCAA
CCGATGCGAATGATCGGCGGACCTCGGTAGTTAATTGGCGTGGGCGAATA
AATGTTAGCATGCG
BS08751.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9135-PA | 1464 | CG9135-RA | 617..1464 | 864..17 | 4240 | 100 | Minus |
CG9135-PB | 1464 | CG9135-RB | 617..1464 | 864..17 | 4240 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9135-RD | 1871 | CG9135-RD | 800..1647 | 864..17 | 4240 | 100 | Minus |
CG9135-RC | 2227 | CG9135-RC | 761..1608 | 864..17 | 4240 | 100 | Minus |
CG9135-RB | 1978 | CG9135-RB | 907..1754 | 864..17 | 4240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6052721..6053258 | 554..17 | 2690 | 100 | Minus |
2L | 23513712 | 2L | 6052351..6052663 | 864..552 | 1565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:16:52 has no hits.
BS08751.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:08 Download gff for
BS08751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-PA | 617..1464 | 17..864 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:42 Download gff for
BS08751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-PB | 617..1464 | 17..864 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:29:11 Download gff for
BS08751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RA | 761..1614 | 11..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:41 Download gff for
BS08751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RB | 907..1760 | 11..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:41 Download gff for
BS08751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6052722..6053264 | 11..553 | 99 | | Minus |
2L | 6052351..6052661 | 554..864 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:29:11 Download gff for
BS08751.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6052351..6052661 | 554..864 | 100 | -> | Minus |
arm_2L | 6052722..6053264 | 11..553 | 99 | | Minus |
BS08751.5prime Sequence
908 bp (808 high quality bases) assembled on 2006-01-11
> BS08751.5prime
GAAGTTATCAGTCGACATGTCGGCCAAGCGAAAGGCAGGTGGCAATGGAG
CCGGACCCAACAAGCGGCGACCCAAAAAGAAGGAGTCGGACTACGAGGAC
GAGTTCAGCGACGAGTCCGACGACGATGGCGTGCAGCAGCAGGCAGCGGC
CGCCAACCAGATGGAGGTTCTCATTCCCCACGACGACCTCGACCCGCCTA
GCAAGCTTCCCGAGGACTTGCTGGCCACGCTAGAGAAGACTCCAGGTCAG
ATGCTGATCGCCGGCATGGTGACCTGGGACCTGACTGGCAAGCGGGACCG
CAAGAACGTCACGAAGGTGCGGCCGAATCTGTACAGCTTCCATCGGTTCA
CAGAAGAGAAGTACCGATATGTGGCCAGCGGACCCAGTGCCGCACACACC
ATTCTTATCAACATGGACCGCAAGGCGCTCGGTTTCGGGCGTAATCCCAG
CGGCCAGCTGGGCCTCAGCCAAGACATCAAGTTGGCGGAGAAGCCCACCA
TTATTCCGGCCCTCGAACAGCTGAACATAGTGCAAGCTGCTGTCGGCCGG
CACCACACTCTGTTTCTCACTGACACGGGAACCGTATACGCCTGCGGCGA
AAACAAGTCCGGCCAGTGCGGTGTGGGAAATACGCATGCTAACATTTATT
CGCCCACGCCAATTAACTACCGAGGTCCGCCGATCATTCGCATCGGTTGC
GGAGCTGAGTTCTCTGTTATTCTGGACATTAAAGGTAGCCTGCACACATT
TGGGCTGCCGGAGTACGGTCAGTTGGGACACAATACTGACGCCNAGTACT
TTGTCAACGCCAACAAATTGTCATTCCATTTCGAGACGTCGCCCAAAAAG
GTCGTTTTGTACATAGAGAAGAGCAAGGAGGGTCATGTAACGCCAGTCGA
TGGCGTGC
BS08751.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9135-PA | 1464 | CG9135-RA | 1..892 | 17..908 | 4441 | 99.8 | Plus |
CG9135-PB | 1464 | CG9135-RB | 1..892 | 17..908 | 4441 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9135-RD | 1871 | CG9135-RD | 184..1075 | 17..908 | 4449 | 99.9 | Plus |
CG9135-RC | 2227 | CG9135-RC | 145..1036 | 17..908 | 4449 | 99.9 | Plus |
CG9135-RB | 1978 | CG9135-RB | 291..1182 | 17..908 | 4449 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6052078..6052626 | 360..908 | 2734 | 99.8 | Plus |
2L | 23513712 | 2L | 6051678..6052022 | 17..361 | 1725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:40:04 has no hits.
BS08751.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:09 Download gff for
BS08751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:43 Download gff for
BS08751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-PB | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:49:45 Download gff for
BS08751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RA | 140..1036 | 10..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:34:51 Download gff for
BS08751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RB | 286..1182 | 10..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:34:51 Download gff for
BS08751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6051673..6052022 | 10..361 | 98 | -> | Plus |
2L | 6052080..6052626 | 362..908 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:49:45 Download gff for
BS08751.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6051673..6052022 | 10..361 | 98 | -> | Plus |
arm_2L | 6052080..6052626 | 362..908 | 99 | | Plus |
BS08751.complete Sequence
1496 bp (1496 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636255
> BS08751.complete
GAAGTTATCAGTCGACATGTCGGCCAAGCGAAAGGCAGGTGGCAATGGAG
CCGGACCCAACAAGCGGCGACCCAAAAAGAAGGAGTCGGACTACGAGGAC
GAGTTCAGCGACGAGTCCGACGACGATGGCGTGCAGCAGCAGGCAGCGGC
CGCCAACCAGATGGAGGTTCTCATTCCCCACGACGACCTCGACCCGCCTA
GCAAGCTTCCCGAGGACTTGCTGGCCACGCTAGAGAAGACTCCAGGTCAG
ATGCTGATCGCCGGCATGGTGACCTGGGACCTGACTGGCAAGCGGGACCG
CAAGAACGTCACGAAGGTGCGGCCGAATCTGTACAGCTTCCATCGGTTCA
CAGAAGAGAAGTACCGATATGTGGCCAGCGGACCCAGTGCCGCACACACC
ATTCTTATCAACATGGACCGCAAGGCGCTCGGTTTCGGGCGTAATCCCAG
CGGCCAGCTGGGCCTCAGCCAAGACATCAAGTTGGCGGAGAAGCCCACCA
TTATTCCGGCCCTCGAACAGCTGAACATAGTGCAAGCTGCTGTCGGCCGG
CACCACACTCTGTTTCTCACTGACACGGGAACCGTATACGCCTGCGGCGA
AAACAAGTCCGGCCAGTGCGGTGTGGGAAATACGCATGCTAACATTTATT
CGCCCACGCCAATTAACTACCGAGGTCCGCCGATCATTCGCATCGGTTGC
GGAGCTGAGTTCTCTGTTATTCTGGACATTAAAGGTAGCCTGCACACATT
TGGGCTGCCGGAGTACGGTCAGTTGGGACACAATACTGACGCCAAGTACT
TTGTCAACGCCAACAAATTGTCATTCCATTTCGAGACGTCGCCCAAAAAG
GTCGTTTTGTACATAGAGAAGAGCAAGGAGGGTCATGTAACGCCAGTCGA
TGGCGTGCAGATAGTTGACTTTGCTTGCGGCAATAATCACACGGTCGCCA
TCGACTCCAAGAAGCGCGTTTATAGCTGGGGCTTTGGCGGTTTCGGGCGT
CTCGGACACGCAGAGCCCAAGGACGAAATGGTGCCGCGTTTAATGAAGTT
TTTCGATACTCAGGGTCGGGGTGGGCGCAGCGTCTTTTGCGGCTCCACTT
TCAGTCTGATCGTCAACGAGCTGGGCCTGCTGTTTTTGTTCGGACAGAAT
AAGAAGACGGGCGAGGCAAATATGTACCCCAAGCCAGTGCAGGATCTTTC
CGGCTGGAACATTACCGACATTGGCTGTGCCAATACATCGATTATGATTT
CGGCCGACGACACACTGATCGCTTGGGGCGCATCGCCCACGTTTGGCGAG
CTGGGCATTGGGGAGTTCCAGAAGTCGTCGACGGTGCCCAAGGAGGTGCC
AAAGTTGGACAACATTAAAATACCTCAAGTGACTATGGGTTACTCGCACA
CGGTGTTGCTTGTGGACACCACCCATGAGGCCACCAAGCAAAAGTACGAG
AAGATGCCCGAGTACACTATCGATGATTAGAAGCTTTCTAGACCAT
BS08751.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9135-RD | 1464 | CG9135-PD | 1..1464 | 17..1480 | 7320 | 100 | Plus |
CG9135-RC | 1464 | CG9135-PC | 1..1464 | 17..1480 | 7320 | 100 | Plus |
CG9135-RB | 1464 | CG9135-PB | 1..1464 | 17..1480 | 7320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9135-RD | 1871 | CG9135-RD | 184..1647 | 17..1480 | 7320 | 100 | Plus |
CG9135-RC | 2227 | CG9135-RC | 145..1608 | 17..1480 | 7320 | 100 | Plus |
CG9135-RB | 1978 | CG9135-RB | 291..1754 | 17..1480 | 7320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6052078..6052663 | 360..945 | 2930 | 100 | Plus |
2L | 23513712 | 2L | 6052721..6053258 | 943..1480 | 2690 | 100 | Plus |
2L | 23513712 | 2L | 6051678..6052022 | 17..361 | 1725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:12:50 has no hits.
BS08751.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:27 Download gff for
BS08751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RB | 1..1464 | 17..1480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:45 Download gff for
BS08751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RB | 296..1770 | 10..1486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:55 Download gff for
BS08751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RA | 145..1608 | 17..1480 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:27 Download gff for
BS08751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RB | 296..1770 | 10..1486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:18 Download gff for
BS08751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RB | 291..1754 | 17..1480 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:18 Download gff for
BS08751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6051678..6052022 | 17..361 | 100 | -> | Plus |
2L | 6052080..6052661 | 362..943 | 100 | -> | Plus |
2L | 6052722..6053258 | 944..1480 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:55 Download gff for
BS08751.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6051678..6052022 | 17..361 | 100 | -> | Plus |
arm_2L | 6052080..6052661 | 362..943 | 100 | -> | Plus |
arm_2L | 6052722..6053258 | 944..1480 | 100 | | Plus |
BS08751.pep Sequence
Translation from 16 to 1479
> BS08751.pep
MSAKRKAGGNGAGPNKRRPKKKESDYEDEFSDESDDDGVQQQAAAANQME
VLIPHDDLDPPSKLPEDLLATLEKTPGQMLIAGMVTWDLTGKRDRKNVTK
VRPNLYSFHRFTEEKYRYVASGPSAAHTILINMDRKALGFGRNPSGQLGL
SQDIKLAEKPTIIPALEQLNIVQAAVGRHHTLFLTDTGTVYACGENKSGQ
CGVGNTHANIYSPTPINYRGPPIIRIGCGAEFSVILDIKGSLHTFGLPEY
GQLGHNTDAKYFVNANKLSFHFETSPKKVVLYIEKSKEGHVTPVDGVQIV
DFACGNNHTVAIDSKKRVYSWGFGGFGRLGHAEPKDEMVPRLMKFFDTQG
RGGRSVFCGSTFSLIVNELGLLFLFGQNKKTGEANMYPKPVQDLSGWNIT
DIGCANTSIMISADDTLIAWGASPTFGELGIGEFQKSSTVPKEVPKLDNI
KIPQVTMGYSHTVLLVDTTHEATKQKYEKMPEYTIDD*
BS08751.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9135-PD | 487 | CG9135-PD | 1..487 | 1..487 | 2579 | 100 | Plus |
CG9135-PC | 487 | CG9135-PC | 1..487 | 1..487 | 2579 | 100 | Plus |
CG9135-PB | 487 | CG9135-PB | 1..487 | 1..487 | 2579 | 100 | Plus |
CG9135-PA | 487 | CG9135-PA | 1..487 | 1..487 | 2579 | 100 | Plus |
CG9153-PA | 1058 | CG9153-PA | 10..318 | 140..466 | 304 | 30.5 | Plus |