Clone Sequence Records
BS08753.3prime Sequence
861 bp (821 high quality bases) assembled on 2006-01-11
> BS08753.3prime
ATGGTCTAGAAAGCTTCTAGGAGCTGTCCGGATAGACGGTTCCTATCAGG
CGCATACCGTTCCATTTCCATTCGTGGGAGACAATCGTGGCGGAGGCATG
ACCCAACTGGATGTGGCAGGGTTCCTCCTTCGCCGTGGCCAGGAAGCAGG
CGGTGTACAGGGCCATGTCCAGTTCGGGCGAGATGCCCACAAAGAAGCCG
TTGACTGGCTTATTGATGTTGTGAAACGTGTAGCGAACGCTGAGAACCAT
TTGGTTGTGCTTTCCCATTTCCTTGTGGTTCAGCCAGCCCTTGTAGTCCA
CATTGCCACGTTGCTCCTGATCTGCAAAGTACAGCCAGTTATGCAAGCCC
AGGACCTTCTGGTCCCGAATCTCCGCCATGAAGACGTGCTCGAAACTGGA
ACTGCCCACAATGCCACGACCTCTGGAGTAGGGAGTGAACCACAGCTCCT
GCAGCAGACGCAGCTGATCGTCATATTCTACGCTCACAATATCCTTGTGT
ACCAAAAAACGCATGGTCAGCTTCATCACACGCGTACCCATCACGGCCCT
AAGGAAATCATATTGCTCCTGGACGTGCTCCGGCGTTGGATGCTCCTGCA
CAGCCACGTCCAACTCGTAGTTGTCAAAGAGCCTCATTAGCAGAGCGGTG
GTGGAGTTAGCATCCCTGGCCAGCAGATCCTGGTGCAATTCAAAGAGGTT
TCTAGGGGCGCGATCGTCATGAGCACCTGAAGTGGTCTTCCCCTGGAGAT
TCACCTTGTAGAGGTATGGACTGACCTCGGTCTCCTCCGCGTACAGATTC
TTCGAGAGGGTCAAGACGTCATCCGGCGTTTTGGGCAGCGGCTTGCTGTG
GAAGTACTCGT
BS08753.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3303-PA | 969 | CG3303-RA | 125..969 | 861..17 | 4225 | 100 | Minus |
CG31292-PA | 291 | CG31292-RA | 125..287 | 861..699 | 815 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:59:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3303-RA | 1645 | CG3303-RA | 320..1165 | 861..16 | 4230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:59:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15909642..15909887 | 261..16 | 1230 | 100 | Minus |
3R | 32079331 | 3R | 15909347..15909580 | 493..260 | 1170 | 100 | Minus |
3R | 32079331 | 3R | 15909085..15909290 | 698..493 | 1030 | 100 | Minus |
3R | 32079331 | 3R | 15906586..15906746 | 859..699 | 805 | 100 | Minus |
3R | 32079331 | 3R | 15908778..15908938 | 859..699 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:59:32 has no hits.
BS08753.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:10 Download gff for
BS08753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-PA | 125..969 | 17..861 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:45 Download gff for
BS08753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-PA | 125..969 | 17..861 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:11:11 Download gff for
BS08753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 284..1135 | 9..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:32:53 Download gff for
BS08753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 320..1171 | 9..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:32:53 Download gff for
BS08753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15908777..15908938 | 699..861 | 99 | -> | Minus |
3R | 15909085..15909290 | 493..698 | 100 | -> | Minus |
3R | 15909348..15909580 | 260..492 | 100 | -> | Minus |
3R | 15909644..15909893 | 9..259 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:11:11 Download gff for
BS08753.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11734499..11734660 | 699..861 | 99 | -> | Minus |
arm_3R | 11734807..11735012 | 493..698 | 100 | -> | Minus |
arm_3R | 11735070..11735302 | 260..492 | 100 | -> | Minus |
arm_3R | 11735366..11735615 | 9..259 | 98 | | Minus |
BS08753.5prime Sequence
904 bp (725 high quality bases) assembled on 2006-01-11
> BS08753.5prime
GAAGTTATCAGTCGACATGGACGCAGTGCAGCAGCAAACAAACAGCACTA
GCAACATCGACAGCGCCAAATGCCAGAAGCTAAAGAGATTTGTGATCGTA
GGCTTGCTGATCACCATTGGCATTTTGAGCTGGCACTTCTACGAGTACTT
CCACAGCAAGCCGCTGCCCAAAACGCCGGATGACGTCTTGACCCTCTCGA
AGAATCTGTACGCGGAGGAGACCGAGGTCAGTCCATACCTCTACAAGGTG
AATCTCCAGGGGAAGACCACTTCAGGTGCTCATGACGATCGCGCCCCTAG
AAACCTCTTTGAATTGCACCAGGATCTGCTGGCCAGGGATGCTAACTCCA
CCACCGCTCTGCTAATGAGGCTCTTTGACAACTACGAGTTGGACGTGGCT
GTGCAGGAGCATCCAACGCCGGAGCACGTCCAGGAGCAATATGATTTCCT
TAGGGCCGTGATGGGTACGCGTGTGATGAAGCTGACCATGCGTTTTTTGG
TACACAAGGATATTGTGAGCGTAGAATATGACGATCAGCTGCGTCTGCTG
CAGGAGCTGTGGTTCACTCCCTACTCCAGAGGTCGTGGCATTGTGGGCAG
TTCCAGTTTCGAGCACGTCTTCATGGCGGAGATTCGGGACCAGAAGGTCC
TGGGCTTGCATAACTGGCTGTACTTTGCAGATCAGGAGCAACGTGGCAAT
GTGGACTACAAGGGCTGGCTGAACCACAAGGAAATGGGAAAGCACAACCA
AATGGTTCTCAGCGTTCGCTACACGTTTCACAACATCAATAAGCCAGTCA
ACGGCTTCTTTGTGGGCATCTCGCCCGAACTGGACATGGCCCTGTACACC
GCCTGCTTCCTGGCCACGGCGAAGGAGGAACCCTGCCACATCCCAGTGGG
TCAT
BS08753.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3303-PA | 969 | CG3303-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
CG31292-PA | 291 | CG31292-RA | 1..287 | 17..303 | 1435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3303-RA | 1645 | CG3303-RA | 196..1083 | 17..904 | 4395 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15909347..15909580 | 509..742 | 1170 | 100 | Plus |
3R | 32079331 | 3R | 15909085..15909290 | 304..509 | 1030 | 100 | Plus |
3R | 32079331 | 3R | 15906586..15906746 | 143..303 | 805 | 100 | Plus |
3R | 32079331 | 3R | 15908778..15908938 | 143..303 | 805 | 100 | Plus |
3R | 32079331 | 3R | 15909642..15909805 | 741..904 | 775 | 98.2 | Plus |
3R | 32079331 | 3R | 15906401..15906527 | 17..143 | 635 | 100 | Plus |
3R | 32079331 | 3R | 15908593..15908719 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:33:29 has no hits.
BS08753.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:11 Download gff for
BS08753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:46 Download gff for
BS08753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:15:14 Download gff for
BS08753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 148..1047 | 2..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:37 Download gff for
BS08753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 184..1083 | 2..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:37 Download gff for
BS08753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15909644..15909805 | 743..904 | 98 | | Plus |
3R | 15908581..15908719 | 2..143 | 96 | -> | Plus |
3R | 15908779..15908938 | 144..303 | 100 | -> | Plus |
3R | 15909085..15909290 | 304..509 | 100 | -> | Plus |
3R | 15909348..15909580 | 510..742 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:15:14 Download gff for
BS08753.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11734303..11734441 | 2..143 | 96 | -> | Plus |
arm_3R | 11734501..11734660 | 144..303 | 100 | -> | Plus |
arm_3R | 11734807..11735012 | 304..509 | 100 | -> | Plus |
arm_3R | 11735070..11735302 | 510..742 | 100 | -> | Plus |
arm_3R | 11735366..11735527 | 743..904 | 98 | | Plus |
BS08753.complete Sequence
1001 bp (1001 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636256
> BS08753.complete
GAAGTTATCAGTCGACATGGACGCAGTGCAGCAGCAAACAAACAGCACTA
GCAACATCGACAGCGCCAAATGCCAGAAGCTAAAGAGATTTGTGATCGTA
GGCTTGCTGATCACCATTGGCATTTTGAGCTGGCACTTCTACGAGTACTT
CCACAGCAAGCCGCTGCCCAAAACGCCGGATGACGTCTTGACCCTCTCGA
AGAATCTGTACGCGGAGGAGACCGAGGTCAGTCCATACCTCTACAAGGTG
AATCTCCAGGGGAAGACCACTTCAGGTGCTCATGACGATCGCGCCCCTAG
AAACCTCTTTGAATTGCACCAGGATCTGCTGGCCAGGGATGCTAACTCCA
CCACCGCTCTGCTAATGAGGCTCTTTGACAACTACGAGTTGGACGTGGCT
GTGCAGGAGCATCCAACGCCGGAGCACGTCCAGGAGCAATATGATTTCCT
TAGGGCCGTGATGGGTACGCGTGTGATGAAGCTGACCATGCGTTTTTTGG
TACACAAGGATATTGTGAGCGTAGAATATGACGATCAGCTGCGTCTGCTG
CAGGAGCTGTGGTTCACTCCCTACTCCAGAGGTCGTGGCATTGTGGGCAG
TTCCAGTTTCGAGCACGTCTTCATGGCGGAGATTCGGGACCAGAAGGTCC
TGGGCTTGCATAACTGGCTGTACTTTGCAGATCAGGAGCAACGTGGCAAT
GTGGACTACAAGGGCTGGCTGAACCACAAGGAAATGGGAAAGCACAACCA
AATGGTTCTCAGCGTTCGCTACACGTTTCACAACATCAATAAGCCAGTCA
ACGGCTTCTTTGTGGGCATCTCGCCCGAACTGGACATGGCCCTGTACACC
GCCTGCTTCCTGGCCACGGCGAAGGAGGAACCCTGCCACATCCAGTTGGG
TCATGCCTCCGCCACGATTGTCTCCCACGAATGGAAATGGAACGGTATGC
GCCTGATAGGAACCGTCTATCCGGACAGCTCCTAGAAGCTTTCTAGACCA
T
BS08753.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3303-RA | 969 | CG3303-PA | 1..969 | 17..985 | 4845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3303-RA | 1645 | CG3303-RA | 196..1165 | 17..986 | 4850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15909642..15909887 | 741..986 | 1230 | 100 | Plus |
3R | 32079331 | 3R | 15909347..15909580 | 509..742 | 1170 | 100 | Plus |
3R | 32079331 | 3R | 15909085..15909290 | 304..509 | 1030 | 100 | Plus |
3R | 32079331 | 3R | 15906586..15906746 | 143..303 | 805 | 100 | Plus |
3R | 32079331 | 3R | 15908778..15908938 | 143..303 | 805 | 100 | Plus |
3R | 32079331 | 3R | 15906401..15906527 | 17..143 | 635 | 100 | Plus |
3R | 32079331 | 3R | 15908593..15908719 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:12:47 has no hits.
BS08753.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:28 Download gff for
BS08753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 1..969 | 17..985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:08 Download gff for
BS08753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 148..1135 | 2..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:43 Download gff for
BS08753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 160..1128 | 17..985 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:28 Download gff for
BS08753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 148..1135 | 2..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:01 Download gff for
BS08753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 196..1164 | 17..985 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:01 Download gff for
BS08753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15909348..15909580 | 510..742 | 100 | -> | Plus |
3R | 15909644..15909886 | 743..985 | 100 | | Plus |
3R | 15908593..15908719 | 17..143 | 100 | -> | Plus |
3R | 15908779..15908938 | 144..303 | 100 | -> | Plus |
3R | 15909085..15909290 | 304..509 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:43 Download gff for
BS08753.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11734315..11734441 | 17..143 | 100 | -> | Plus |
arm_3R | 11734501..11734660 | 144..303 | 100 | -> | Plus |
arm_3R | 11734807..11735012 | 304..509 | 100 | -> | Plus |
arm_3R | 11735070..11735302 | 510..742 | 100 | -> | Plus |
arm_3R | 11735366..11735608 | 743..985 | 100 | | Plus |
BS08753.pep Sequence
Translation from 16 to 984
> BS08753.pep
MDAVQQQTNSTSNIDSAKCQKLKRFVIVGLLITIGILSWHFYEYFHSKPL
PKTPDDVLTLSKNLYAEETEVSPYLYKVNLQGKTTSGAHDDRAPRNLFEL
HQDLLARDANSTTALLMRLFDNYELDVAVQEHPTPEHVQEQYDFLRAVMG
TRVMKLTMRFLVHKDIVSVEYDDQLRLLQELWFTPYSRGRGIVGSSSFEH
VFMAEIRDQKVLGLHNWLYFADQEQRGNVDYKGWLNHKEMGKHNQMVLSV
RYTFHNINKPVNGFFVGISPELDMALYTACFLATAKEEPCHIQLGHASAT
IVSHEWKWNGMRLIGTVYPDSS*
BS08753.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3303-PA | 322 | CG3303-PA | 1..322 | 1..322 | 1711 | 100 | Plus |
CG2145-PB | 592 | CG2145-PB | 329..591 | 53..320 | 561 | 42.8 | Plus |
CG2145-PA | 592 | CG2145-PA | 329..591 | 53..320 | 561 | 42.8 | Plus |