Clone BS08753 Report

Search the DGRC for BS08753

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG3303-RA
Protein status:BS08753.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08753.3prime Sequence

861 bp (821 high quality bases) assembled on 2006-01-11

> BS08753.3prime
ATGGTCTAGAAAGCTTCTAGGAGCTGTCCGGATAGACGGTTCCTATCAGG
CGCATACCGTTCCATTTCCATTCGTGGGAGACAATCGTGGCGGAGGCATG
ACCCAACTGGATGTGGCAGGGTTCCTCCTTCGCCGTGGCCAGGAAGCAGG
CGGTGTACAGGGCCATGTCCAGTTCGGGCGAGATGCCCACAAAGAAGCCG
TTGACTGGCTTATTGATGTTGTGAAACGTGTAGCGAACGCTGAGAACCAT
TTGGTTGTGCTTTCCCATTTCCTTGTGGTTCAGCCAGCCCTTGTAGTCCA
CATTGCCACGTTGCTCCTGATCTGCAAAGTACAGCCAGTTATGCAAGCCC
AGGACCTTCTGGTCCCGAATCTCCGCCATGAAGACGTGCTCGAAACTGGA
ACTGCCCACAATGCCACGACCTCTGGAGTAGGGAGTGAACCACAGCTCCT
GCAGCAGACGCAGCTGATCGTCATATTCTACGCTCACAATATCCTTGTGT
ACCAAAAAACGCATGGTCAGCTTCATCACACGCGTACCCATCACGGCCCT
AAGGAAATCATATTGCTCCTGGACGTGCTCCGGCGTTGGATGCTCCTGCA
CAGCCACGTCCAACTCGTAGTTGTCAAAGAGCCTCATTAGCAGAGCGGTG
GTGGAGTTAGCATCCCTGGCCAGCAGATCCTGGTGCAATTCAAAGAGGTT
TCTAGGGGCGCGATCGTCATGAGCACCTGAAGTGGTCTTCCCCTGGAGAT
TCACCTTGTAGAGGTATGGACTGACCTCGGTCTCCTCCGCGTACAGATTC
TTCGAGAGGGTCAAGACGTCATCCGGCGTTTTGGGCAGCGGCTTGCTGTG
GAAGTACTCGT

BS08753.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3303-PA 969 CG3303-RA 125..969 861..17 4225 100 Minus
CG31292-PA 291 CG31292-RA 125..287 861..699 815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3303-RA 1645 CG3303-RA 320..1165 861..16 4230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15909642..15909887 261..16 1230 100 Minus
3R 32079331 3R 15909347..15909580 493..260 1170 100 Minus
3R 32079331 3R 15909085..15909290 698..493 1030 100 Minus
3R 32079331 3R 15906586..15906746 859..699 805 100 Minus
3R 32079331 3R 15908778..15908938 859..699 805 100 Minus
Blast to na_te.dros performed on 2015-01-31 14:59:32 has no hits.

BS08753.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:10 Download gff for BS08753.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-PA 125..969 17..861 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:45 Download gff for BS08753.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-PA 125..969 17..861 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:11:11 Download gff for BS08753.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 284..1135 9..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:32:53 Download gff for BS08753.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 320..1171 9..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:32:53 Download gff for BS08753.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15908777..15908938 699..861 99 -> Minus
3R 15909085..15909290 493..698 100 -> Minus
3R 15909348..15909580 260..492 100 -> Minus
3R 15909644..15909893 9..259 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:11:11 Download gff for BS08753.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11734499..11734660 699..861 99 -> Minus
arm_3R 11734807..11735012 493..698 100 -> Minus
arm_3R 11735070..11735302 260..492 100 -> Minus
arm_3R 11735366..11735615 9..259 98   Minus

BS08753.5prime Sequence

904 bp (725 high quality bases) assembled on 2006-01-11

> BS08753.5prime
GAAGTTATCAGTCGACATGGACGCAGTGCAGCAGCAAACAAACAGCACTA
GCAACATCGACAGCGCCAAATGCCAGAAGCTAAAGAGATTTGTGATCGTA
GGCTTGCTGATCACCATTGGCATTTTGAGCTGGCACTTCTACGAGTACTT
CCACAGCAAGCCGCTGCCCAAAACGCCGGATGACGTCTTGACCCTCTCGA
AGAATCTGTACGCGGAGGAGACCGAGGTCAGTCCATACCTCTACAAGGTG
AATCTCCAGGGGAAGACCACTTCAGGTGCTCATGACGATCGCGCCCCTAG
AAACCTCTTTGAATTGCACCAGGATCTGCTGGCCAGGGATGCTAACTCCA
CCACCGCTCTGCTAATGAGGCTCTTTGACAACTACGAGTTGGACGTGGCT
GTGCAGGAGCATCCAACGCCGGAGCACGTCCAGGAGCAATATGATTTCCT
TAGGGCCGTGATGGGTACGCGTGTGATGAAGCTGACCATGCGTTTTTTGG
TACACAAGGATATTGTGAGCGTAGAATATGACGATCAGCTGCGTCTGCTG
CAGGAGCTGTGGTTCACTCCCTACTCCAGAGGTCGTGGCATTGTGGGCAG
TTCCAGTTTCGAGCACGTCTTCATGGCGGAGATTCGGGACCAGAAGGTCC
TGGGCTTGCATAACTGGCTGTACTTTGCAGATCAGGAGCAACGTGGCAAT
GTGGACTACAAGGGCTGGCTGAACCACAAGGAAATGGGAAAGCACAACCA
AATGGTTCTCAGCGTTCGCTACACGTTTCACAACATCAATAAGCCAGTCA
ACGGCTTCTTTGTGGGCATCTCGCCCGAACTGGACATGGCCCTGTACACC
GCCTGCTTCCTGGCCACGGCGAAGGAGGAACCCTGCCACATCCCAGTGGG
TCAT

BS08753.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3303-PA 969 CG3303-RA 1..877 17..893 4385 100 Plus
CG31292-PA 291 CG31292-RA 1..287 17..303 1435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3303-RA 1645 CG3303-RA 196..1083 17..904 4395 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15909347..15909580 509..742 1170 100 Plus
3R 32079331 3R 15909085..15909290 304..509 1030 100 Plus
3R 32079331 3R 15906586..15906746 143..303 805 100 Plus
3R 32079331 3R 15908778..15908938 143..303 805 100 Plus
3R 32079331 3R 15909642..15909805 741..904 775 98.2 Plus
3R 32079331 3R 15906401..15906527 17..143 635 100 Plus
3R 32079331 3R 15908593..15908719 17..143 635 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:33:29 has no hits.

BS08753.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:11 Download gff for BS08753.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:46 Download gff for BS08753.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:15:14 Download gff for BS08753.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 148..1047 2..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:37 Download gff for BS08753.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 184..1083 2..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:37 Download gff for BS08753.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15909644..15909805 743..904 98   Plus
3R 15908581..15908719 2..143 96 -> Plus
3R 15908779..15908938 144..303 100 -> Plus
3R 15909085..15909290 304..509 100 -> Plus
3R 15909348..15909580 510..742 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:15:14 Download gff for BS08753.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11734303..11734441 2..143 96 -> Plus
arm_3R 11734501..11734660 144..303 100 -> Plus
arm_3R 11734807..11735012 304..509 100 -> Plus
arm_3R 11735070..11735302 510..742 100 -> Plus
arm_3R 11735366..11735527 743..904 98   Plus

BS08753.complete Sequence

1001 bp (1001 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636256

> BS08753.complete
GAAGTTATCAGTCGACATGGACGCAGTGCAGCAGCAAACAAACAGCACTA
GCAACATCGACAGCGCCAAATGCCAGAAGCTAAAGAGATTTGTGATCGTA
GGCTTGCTGATCACCATTGGCATTTTGAGCTGGCACTTCTACGAGTACTT
CCACAGCAAGCCGCTGCCCAAAACGCCGGATGACGTCTTGACCCTCTCGA
AGAATCTGTACGCGGAGGAGACCGAGGTCAGTCCATACCTCTACAAGGTG
AATCTCCAGGGGAAGACCACTTCAGGTGCTCATGACGATCGCGCCCCTAG
AAACCTCTTTGAATTGCACCAGGATCTGCTGGCCAGGGATGCTAACTCCA
CCACCGCTCTGCTAATGAGGCTCTTTGACAACTACGAGTTGGACGTGGCT
GTGCAGGAGCATCCAACGCCGGAGCACGTCCAGGAGCAATATGATTTCCT
TAGGGCCGTGATGGGTACGCGTGTGATGAAGCTGACCATGCGTTTTTTGG
TACACAAGGATATTGTGAGCGTAGAATATGACGATCAGCTGCGTCTGCTG
CAGGAGCTGTGGTTCACTCCCTACTCCAGAGGTCGTGGCATTGTGGGCAG
TTCCAGTTTCGAGCACGTCTTCATGGCGGAGATTCGGGACCAGAAGGTCC
TGGGCTTGCATAACTGGCTGTACTTTGCAGATCAGGAGCAACGTGGCAAT
GTGGACTACAAGGGCTGGCTGAACCACAAGGAAATGGGAAAGCACAACCA
AATGGTTCTCAGCGTTCGCTACACGTTTCACAACATCAATAAGCCAGTCA
ACGGCTTCTTTGTGGGCATCTCGCCCGAACTGGACATGGCCCTGTACACC
GCCTGCTTCCTGGCCACGGCGAAGGAGGAACCCTGCCACATCCAGTTGGG
TCATGCCTCCGCCACGATTGTCTCCCACGAATGGAAATGGAACGGTATGC
GCCTGATAGGAACCGTCTATCCGGACAGCTCCTAGAAGCTTTCTAGACCA
T

BS08753.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3303-RA 969 CG3303-PA 1..969 17..985 4845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3303-RA 1645 CG3303-RA 196..1165 17..986 4850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15909642..15909887 741..986 1230 100 Plus
3R 32079331 3R 15909347..15909580 509..742 1170 100 Plus
3R 32079331 3R 15909085..15909290 304..509 1030 100 Plus
3R 32079331 3R 15906586..15906746 143..303 805 100 Plus
3R 32079331 3R 15908778..15908938 143..303 805 100 Plus
3R 32079331 3R 15906401..15906527 17..143 635 100 Plus
3R 32079331 3R 15908593..15908719 17..143 635 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:12:47 has no hits.

BS08753.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:28 Download gff for BS08753.complete
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 1..969 17..985 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:08 Download gff for BS08753.complete
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 148..1135 2..993 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:43 Download gff for BS08753.complete
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 160..1128 17..985 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:28 Download gff for BS08753.complete
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 148..1135 2..993 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:01 Download gff for BS08753.complete
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 196..1164 17..985 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:01 Download gff for BS08753.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15909348..15909580 510..742 100 -> Plus
3R 15909644..15909886 743..985 100   Plus
3R 15908593..15908719 17..143 100 -> Plus
3R 15908779..15908938 144..303 100 -> Plus
3R 15909085..15909290 304..509 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:43 Download gff for BS08753.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11734315..11734441 17..143 100 -> Plus
arm_3R 11734501..11734660 144..303 100 -> Plus
arm_3R 11734807..11735012 304..509 100 -> Plus
arm_3R 11735070..11735302 510..742 100 -> Plus
arm_3R 11735366..11735608 743..985 100   Plus

BS08753.pep Sequence

Translation from 16 to 984

> BS08753.pep
MDAVQQQTNSTSNIDSAKCQKLKRFVIVGLLITIGILSWHFYEYFHSKPL
PKTPDDVLTLSKNLYAEETEVSPYLYKVNLQGKTTSGAHDDRAPRNLFEL
HQDLLARDANSTTALLMRLFDNYELDVAVQEHPTPEHVQEQYDFLRAVMG
TRVMKLTMRFLVHKDIVSVEYDDQLRLLQELWFTPYSRGRGIVGSSSFEH
VFMAEIRDQKVLGLHNWLYFADQEQRGNVDYKGWLNHKEMGKHNQMVLSV
RYTFHNINKPVNGFFVGISPELDMALYTACFLATAKEEPCHIQLGHASAT
IVSHEWKWNGMRLIGTVYPDSS*

BS08753.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3303-PA 322 CG3303-PA 1..322 1..322 1711 100 Plus
CG2145-PB 592 CG2145-PB 329..591 53..320 561 42.8 Plus
CG2145-PA 592 CG2145-PA 329..591 53..320 561 42.8 Plus