Clone Sequence Records
BS08757.3prime Sequence
646 bp (599 high quality bases) assembled on 2006-01-11
> BS08757.3prime
ATGGTCTAGAAAGCTTTTACGCGCAGCACTTGCTGTAGCCCGGCGCCTTC
TCCTGGTTCCGGCGATCGATAATCACGCGCTCCTGATTCTCCGCCGACTC
GCGTCCTGATGTCTTGTCCAGAATGGCCTCGGCCAGCTCGCAGAAGGCCC
GCTCGATGTTTATGTTCGACTTGGCGGATGTTTCCATAAACCGAATGCCA
TGTTCACGGGCAATCGCTTCGCCGCGCTCCTTGTTGACCACCCTCTTGTC
CGTCATATCGCACTTGTTGCCGAGGATCATCTTCTCCACATCCTCGTTGG
CGTGCTCGTCTATATTCCGTAACCATTTGACTATGTTCTCGAAACTCTTC
TCGTTCGTTATGTCATAGACCAGCATTATGCCCATGGCGCCTCGATAGTA
CGAGGTGGTTATCGTGTGGAACCGCTCCTGGCCGGCGGTGTCCCATATTT
GCAGCTTGATCTTCTTGCCGCGCAGCTCGACTGTTTTGATTTTGAAATCG
ATGCCTATGGTCGATATGAACGTGGACGTGAATGCATCATCCGAGAACCG
GAACAATATGCACGTCTTGCCCACTCCTGAATCACCGATCAGCAACAGTT
TAAAGAGCAAAATCGTAGGTTTTCTTTGCCATGTCGACTGATAACT
BS08757.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17060-PA | 615 | Rab10-RA | 21..615 | 611..17 | 2975 | 100 | Minus |
CG9100-PA | 672 | Rab30-RA | 161..208 | 465..418 | 190 | 95.8 | Minus |
CG9100-PB | 672 | Rab30-RB | 161..208 | 465..418 | 190 | 95.8 | Minus |
CG9100-PC | 672 | Rab30-RC | 161..208 | 465..418 | 190 | 95.8 | Minus |
CG8287-PA | 624 | Rab8-RA | 162..206 | 467..423 | 150 | 93.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab10-RA | 2336 | CG17060-RA | 294..910 | 632..15 | 3065 | 99.8 | Minus |
Rab8-RC | 2043 | CG8287-RC | 581..1033 | 623..170 | 535 | 74.9 | Minus |
Rab8-RA | 2263 | CG8287-RA | 581..1033 | 623..170 | 535 | 74.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20252236..20252437 | 506..305 | 1010 | 100 | Minus |
X | 23542271 | X | 20253065..20253265 | 215..15 | 1005 | 100 | Minus |
X | 23542271 | X | 20251631..20251758 | 632..504 | 595 | 99.2 | Minus |
X | 23542271 | X | 20252506..20252597 | 306..215 | 460 | 100 | Minus |
3L | 28110227 | 3L | 19869109..19869308 | 245..444 | 250 | 75 | Plus |
2L | 23513712 | 2L | 7031898..7031949 | 418..469 | 215 | 94.2 | Plus |
3L | 28110227 | 3L | 19870380..19870477 | 504..601 | 190 | 79.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:07:38 has no hits.
BS08757.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:19 Download gff for
BS08757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-PA | 1..615 | 17..632 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:58 Download gff for
BS08757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17060-PA | 1..615 | 17..632 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:19:33 Download gff for
BS08757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 291..910 | 15..635 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:50 Download gff for
BS08757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 291..910 | 15..635 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:50 Download gff for
BS08757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20251628..20251757 | 505..635 | 98 | -> | Minus |
X | 20252238..20252437 | 305..504 | 100 | -> | Minus |
X | 20252508..20252597 | 215..304 | 100 | -> | Minus |
X | 20253066..20253265 | 15..214 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:19:33 Download gff for
BS08757.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20122702..20122831 | 505..635 | 98 | -> | Minus |
arm_X | 20123312..20123511 | 305..504 | 100 | -> | Minus |
arm_X | 20123582..20123671 | 215..304 | 100 | -> | Minus |
arm_X | 20124140..20124339 | 15..214 | 100 | | Minus |
BS08757.5prime Sequence
645 bp (644 high quality bases) assembled on 2006-01-11
> BS08757.5prime
GAAGTTATCAGTCGACATGGCAAAGAAAACCTACGATTTGCTCTTTAAAC
TGTTGCTGATCGGTGATTCAGGAGTGGGCAAGACGTGCATATTGTTCCGG
TTCTCGGATGATGCATTCACGTCCACGTTCATATCGACCATAGGCATCGA
TTTCAAAATCAAAACAGTCGAGCTGCGCGGCAAGAAGATCAAGCTGCAAA
TATGGGACACCGCCGGCCAGGAGCGGTTCCACACGATAACCACCTCGTAC
TATCGAGGCGCCATGGGCATAATGCTGGTCTATGACATAACGAACGAGAA
GAGTTTCGAGAACATAGTCAAATGGTTACGGAATATAGACGAGCACGCCA
ACGAGGATGTGGAGAAGATGATCCTCGGCAACAAGTGCGATATGACGGAC
AAGAGGGTGGTCAACAAGGAGCGCGGCGAAGCGATTGCCCGTGAACATGG
CATTCGGTTTATGGAAACATCCGCCAAGTCGAACATAAACATCGAGCGGG
CCTTCTGCGAGCTGGCCGAGGCCATTCTGGACAAGACATCAGGACGCGAG
TCGGCGGAGAATCAGGAGCGCGTGATTATCGATCGCCGGAACCAGGAGAA
GGCGCCGGGCTACAGCAAGTGCTGCGCGTAAAAGCTTTCTAGACC
BS08757.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17060-PA | 615 | Rab10-RA | 1..615 | 17..631 | 3075 | 100 | Plus |
CG9100-PA | 672 | Rab30-RA | 161..208 | 183..230 | 190 | 95.8 | Plus |
CG9100-PB | 672 | Rab30-RB | 161..208 | 183..230 | 190 | 95.8 | Plus |
CG9100-PC | 672 | Rab30-RC | 161..208 | 183..230 | 190 | 95.8 | Plus |
CG8287-PA | 624 | Rab8-RA | 162..206 | 181..225 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab10-RA | 2336 | CG17060-RA | 294..910 | 17..633 | 3085 | 100 | Plus |
Rab8-RC | 2043 | CG8287-RC | 581..1033 | 26..478 | 540 | 74.9 | Plus |
Rab8-RA | 2263 | CG8287-RA | 581..1033 | 26..478 | 540 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20252236..20252437 | 142..343 | 1010 | 100 | Plus |
X | 23542271 | X | 20253065..20253265 | 433..633 | 1005 | 100 | Plus |
X | 23542271 | X | 20251631..20251758 | 17..144 | 640 | 100 | Plus |
X | 23542271 | X | 20252506..20252597 | 342..433 | 460 | 100 | Plus |
3L | 28110227 | 3L | 19869109..19869308 | 403..204 | 250 | 75 | Minus |
3L | 28110227 | 3L | 19870380..19870498 | 144..26 | 220 | 79 | Minus |
2L | 23513712 | 2L | 7031898..7031949 | 230..179 | 215 | 94.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:37:54 has no hits.
BS08757.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:19 Download gff for
BS08757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-PA | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:00 Download gff for
BS08757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17060-PA | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:43 Download gff for
BS08757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 291..910 | 14..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:09:46 Download gff for
BS08757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 291..910 | 14..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:09:46 Download gff for
BS08757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20251628..20251757 | 14..143 | 99 | -> | Plus |
X | 20252238..20252437 | 144..343 | 100 | -> | Plus |
X | 20252508..20252597 | 344..433 | 100 | -> | Plus |
X | 20253066..20253265 | 434..633 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:43 Download gff for
BS08757.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20122702..20122831 | 14..143 | 99 | -> | Plus |
arm_X | 20123312..20123511 | 144..343 | 100 | -> | Plus |
arm_X | 20123582..20123671 | 344..433 | 100 | -> | Plus |
arm_X | 20124140..20124339 | 434..633 | 100 | | Plus |
BS08757.complete Sequence
647 bp (647 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636257
> BS08757.complete
GAAGTTATCAGTCGACATGGCAAAGAAAACCTACGATTTGCTCTTTAAAC
TGTTGCTGATCGGTGATTCAGGAGTGGGCAAGACGTGCATATTGTTCCGG
TTCTCGGATGATGCATTCACGTCCACGTTCATATCGACCATAGGCATCGA
TTTCAAAATCAAAACAGTCGAGCTGCGCGGCAAGAAGATCAAGCTGCAAA
TATGGGACACCGCCGGCCAGGAGCGGTTCCACACGATAACCACCTCGTAC
TATCGAGGCGCCATGGGCATAATGCTGGTCTATGACATAACGAACGAGAA
GAGTTTCGAGAACATAGTCAAATGGTTACGGAATATAGACGAGCACGCCA
ACGAGGATGTGGAGAAGATGATCCTCGGCAACAAGTGCGATATGACGGAC
AAGAGGGTGGTCAACAAGGAGCGCGGCGAAGCGATTGCCCGTGAACATGG
CATTCGGTTTATGGAAACATCCGCCAAGTCGAACATAAACATCGAGCGGG
CCTTCTGCGAGCTGGCCGAGGCCATTCTGGACAAGACATCAGGACGCGAG
TCGGCGGAGAATCAGGAGCGCGTGATTATCGATCGCCGGAACCAGGAGAA
GGCGCCGGGCTACAGCAAGTGCTGCGCGTAAAAGCTTTCTAGACCAT
BS08757.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab10-RA | 615 | CG17060-PA | 1..615 | 17..631 | 3075 | 100 | Plus |
Rab8-RC | 624 | CG8287-PC | 7..384 | 26..403 | 525 | 75.9 | Plus |
Rab8-RA | 624 | CG8287-PA | 7..384 | 26..403 | 525 | 75.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab10-RA | 2336 | CG17060-RA | 294..910 | 17..633 | 3085 | 100 | Plus |
Rab8-RC | 2043 | CG8287-RC | 581..958 | 26..403 | 525 | 75.9 | Plus |
Rab8-RA | 2263 | CG8287-RA | 581..958 | 26..403 | 525 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20252236..20252437 | 142..343 | 1010 | 100 | Plus |
X | 23542271 | X | 20253065..20253265 | 433..633 | 1005 | 100 | Plus |
X | 23542271 | X | 20251631..20251758 | 17..144 | 640 | 100 | Plus |
X | 23542271 | X | 20252506..20252597 | 342..433 | 460 | 100 | Plus |
3L | 28110227 | 3L | 19869109..19869308 | 403..204 | 250 | 75 | Minus |
3L | 28110227 | 3L | 19870380..19870498 | 144..26 | 220 | 79 | Minus |
2L | 23513712 | 2L | 7031898..7031949 | 230..179 | 215 | 94.2 | Minus |
3R | 32079331 | 3R | 24827498..24827577 | 270..191 | 205 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:01:00 has no hits.
BS08757.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:51 Download gff for
BS08757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 1..615 | 17..631 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:36 Download gff for
BS08757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 252..871 | 14..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:12 Download gff for
BS08757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 294..906 | 17..629 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:51 Download gff for
BS08757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 252..871 | 14..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:28 Download gff for
BS08757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab10-RA | 294..906 | 17..629 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:28 Download gff for
BS08757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20251631..20251757 | 17..143 | 100 | -> | Plus |
X | 20252238..20252437 | 144..343 | 100 | -> | Plus |
X | 20252508..20252597 | 344..433 | 100 | -> | Plus |
X | 20253066..20253261 | 434..629 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:12 Download gff for
BS08757.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20122705..20122831 | 17..143 | 100 | -> | Plus |
arm_X | 20123312..20123511 | 144..343 | 100 | -> | Plus |
arm_X | 20123582..20123671 | 344..433 | 100 | -> | Plus |
arm_X | 20124140..20124335 | 434..629 | 100 | | Plus |
BS08757.pep Sequence
Translation from 16 to 630
> BS08757.pep
MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKT
VELRGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENI
VKWLRNIDEHANEDVEKMILGNKCDMTDKRVVNKERGEAIAREHGIRFME
TSAKSNINIERAFCELAEAILDKTSGRESAENQERVIIDRRNQEKAPGYS
KCCA*
BS08757.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab10-PA | 204 | CG17060-PA | 1..204 | 1..204 | 1052 | 100 | Plus |
Rab8-PC | 207 | CG8287-PC | 3..181 | 4..182 | 706 | 76 | Plus |
Rab8-PA | 207 | CG8287-PA | 3..181 | 4..182 | 706 | 76 | Plus |
Rab1-PA | 205 | CG3320-PA | 8..193 | 6..190 | 551 | 57 | Plus |
Rab3-PA | 220 | CG7576-PA | 14..187 | 2..175 | 531 | 54 | Plus |