Clone BS08757 Report

Search the DGRC for BS08757

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptRab10-RA
Protein status:BS08757.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08757.3prime Sequence

646 bp (599 high quality bases) assembled on 2006-01-11

> BS08757.3prime
ATGGTCTAGAAAGCTTTTACGCGCAGCACTTGCTGTAGCCCGGCGCCTTC
TCCTGGTTCCGGCGATCGATAATCACGCGCTCCTGATTCTCCGCCGACTC
GCGTCCTGATGTCTTGTCCAGAATGGCCTCGGCCAGCTCGCAGAAGGCCC
GCTCGATGTTTATGTTCGACTTGGCGGATGTTTCCATAAACCGAATGCCA
TGTTCACGGGCAATCGCTTCGCCGCGCTCCTTGTTGACCACCCTCTTGTC
CGTCATATCGCACTTGTTGCCGAGGATCATCTTCTCCACATCCTCGTTGG
CGTGCTCGTCTATATTCCGTAACCATTTGACTATGTTCTCGAAACTCTTC
TCGTTCGTTATGTCATAGACCAGCATTATGCCCATGGCGCCTCGATAGTA
CGAGGTGGTTATCGTGTGGAACCGCTCCTGGCCGGCGGTGTCCCATATTT
GCAGCTTGATCTTCTTGCCGCGCAGCTCGACTGTTTTGATTTTGAAATCG
ATGCCTATGGTCGATATGAACGTGGACGTGAATGCATCATCCGAGAACCG
GAACAATATGCACGTCTTGCCCACTCCTGAATCACCGATCAGCAACAGTT
TAAAGAGCAAAATCGTAGGTTTTCTTTGCCATGTCGACTGATAACT

BS08757.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17060-PA 615 Rab10-RA 21..615 611..17 2975 100 Minus
CG9100-PA 672 Rab30-RA 161..208 465..418 190 95.8 Minus
CG9100-PB 672 Rab30-RB 161..208 465..418 190 95.8 Minus
CG9100-PC 672 Rab30-RC 161..208 465..418 190 95.8 Minus
CG8287-PA 624 Rab8-RA 162..206 467..423 150 93.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
Rab10-RA 2336 CG17060-RA 294..910 632..15 3065 99.8 Minus
Rab8-RC 2043 CG8287-RC 581..1033 623..170 535 74.9 Minus
Rab8-RA 2263 CG8287-RA 581..1033 623..170 535 74.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20252236..20252437 506..305 1010 100 Minus
X 23542271 X 20253065..20253265 215..15 1005 100 Minus
X 23542271 X 20251631..20251758 632..504 595 99.2 Minus
X 23542271 X 20252506..20252597 306..215 460 100 Minus
3L 28110227 3L 19869109..19869308 245..444 250 75 Plus
2L 23513712 2L 7031898..7031949 418..469 215 94.2 Plus
3L 28110227 3L 19870380..19870477 504..601 190 79.6 Plus
Blast to na_te.dros performed on 2015-02-10 18:07:38 has no hits.

BS08757.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:19 Download gff for BS08757.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab10-PA 1..615 17..632 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:51:58 Download gff for BS08757.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17060-PA 1..615 17..632 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:19:33 Download gff for BS08757.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 291..910 15..635 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:50 Download gff for BS08757.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 291..910 15..635 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:50 Download gff for BS08757.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20251628..20251757 505..635 98 -> Minus
X 20252238..20252437 305..504 100 -> Minus
X 20252508..20252597 215..304 100 -> Minus
X 20253066..20253265 15..214 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:19:33 Download gff for BS08757.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20122702..20122831 505..635 98 -> Minus
arm_X 20123312..20123511 305..504 100 -> Minus
arm_X 20123582..20123671 215..304 100 -> Minus
arm_X 20124140..20124339 15..214 100   Minus

BS08757.5prime Sequence

645 bp (644 high quality bases) assembled on 2006-01-11

> BS08757.5prime
GAAGTTATCAGTCGACATGGCAAAGAAAACCTACGATTTGCTCTTTAAAC
TGTTGCTGATCGGTGATTCAGGAGTGGGCAAGACGTGCATATTGTTCCGG
TTCTCGGATGATGCATTCACGTCCACGTTCATATCGACCATAGGCATCGA
TTTCAAAATCAAAACAGTCGAGCTGCGCGGCAAGAAGATCAAGCTGCAAA
TATGGGACACCGCCGGCCAGGAGCGGTTCCACACGATAACCACCTCGTAC
TATCGAGGCGCCATGGGCATAATGCTGGTCTATGACATAACGAACGAGAA
GAGTTTCGAGAACATAGTCAAATGGTTACGGAATATAGACGAGCACGCCA
ACGAGGATGTGGAGAAGATGATCCTCGGCAACAAGTGCGATATGACGGAC
AAGAGGGTGGTCAACAAGGAGCGCGGCGAAGCGATTGCCCGTGAACATGG
CATTCGGTTTATGGAAACATCCGCCAAGTCGAACATAAACATCGAGCGGG
CCTTCTGCGAGCTGGCCGAGGCCATTCTGGACAAGACATCAGGACGCGAG
TCGGCGGAGAATCAGGAGCGCGTGATTATCGATCGCCGGAACCAGGAGAA
GGCGCCGGGCTACAGCAAGTGCTGCGCGTAAAAGCTTTCTAGACC

BS08757.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17060-PA 615 Rab10-RA 1..615 17..631 3075 100 Plus
CG9100-PA 672 Rab30-RA 161..208 183..230 190 95.8 Plus
CG9100-PB 672 Rab30-RB 161..208 183..230 190 95.8 Plus
CG9100-PC 672 Rab30-RC 161..208 183..230 190 95.8 Plus
CG8287-PA 624 Rab8-RA 162..206 181..225 150 93.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Rab10-RA 2336 CG17060-RA 294..910 17..633 3085 100 Plus
Rab8-RC 2043 CG8287-RC 581..1033 26..478 540 74.9 Plus
Rab8-RA 2263 CG8287-RA 581..1033 26..478 540 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20252236..20252437 142..343 1010 100 Plus
X 23542271 X 20253065..20253265 433..633 1005 100 Plus
X 23542271 X 20251631..20251758 17..144 640 100 Plus
X 23542271 X 20252506..20252597 342..433 460 100 Plus
3L 28110227 3L 19869109..19869308 403..204 250 75 Minus
3L 28110227 3L 19870380..19870498 144..26 220 79 Minus
2L 23513712 2L 7031898..7031949 230..179 215 94.2 Minus
Blast to na_te.dros performed on 2015-02-10 02:37:54 has no hits.

BS08757.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:19 Download gff for BS08757.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab10-PA 1..615 17..631 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:00 Download gff for BS08757.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17060-PA 1..615 17..631 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:43 Download gff for BS08757.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 291..910 14..633 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:09:46 Download gff for BS08757.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 291..910 14..633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:09:46 Download gff for BS08757.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20251628..20251757 14..143 99 -> Plus
X 20252238..20252437 144..343 100 -> Plus
X 20252508..20252597 344..433 100 -> Plus
X 20253066..20253265 434..633 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:43 Download gff for BS08757.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20122702..20122831 14..143 99 -> Plus
arm_X 20123312..20123511 144..343 100 -> Plus
arm_X 20123582..20123671 344..433 100 -> Plus
arm_X 20124140..20124339 434..633 100   Plus

BS08757.complete Sequence

647 bp (647 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636257

> BS08757.complete
GAAGTTATCAGTCGACATGGCAAAGAAAACCTACGATTTGCTCTTTAAAC
TGTTGCTGATCGGTGATTCAGGAGTGGGCAAGACGTGCATATTGTTCCGG
TTCTCGGATGATGCATTCACGTCCACGTTCATATCGACCATAGGCATCGA
TTTCAAAATCAAAACAGTCGAGCTGCGCGGCAAGAAGATCAAGCTGCAAA
TATGGGACACCGCCGGCCAGGAGCGGTTCCACACGATAACCACCTCGTAC
TATCGAGGCGCCATGGGCATAATGCTGGTCTATGACATAACGAACGAGAA
GAGTTTCGAGAACATAGTCAAATGGTTACGGAATATAGACGAGCACGCCA
ACGAGGATGTGGAGAAGATGATCCTCGGCAACAAGTGCGATATGACGGAC
AAGAGGGTGGTCAACAAGGAGCGCGGCGAAGCGATTGCCCGTGAACATGG
CATTCGGTTTATGGAAACATCCGCCAAGTCGAACATAAACATCGAGCGGG
CCTTCTGCGAGCTGGCCGAGGCCATTCTGGACAAGACATCAGGACGCGAG
TCGGCGGAGAATCAGGAGCGCGTGATTATCGATCGCCGGAACCAGGAGAA
GGCGCCGGGCTACAGCAAGTGCTGCGCGTAAAAGCTTTCTAGACCAT

BS08757.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
Rab10-RA 615 CG17060-PA 1..615 17..631 3075 100 Plus
Rab8-RC 624 CG8287-PC 7..384 26..403 525 75.9 Plus
Rab8-RA 624 CG8287-PA 7..384 26..403 525 75.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:02
Subject Length Description Subject Range Query Range Score Percent Strand
Rab10-RA 2336 CG17060-RA 294..910 17..633 3085 100 Plus
Rab8-RC 2043 CG8287-RC 581..958 26..403 525 75.9 Plus
Rab8-RA 2263 CG8287-RA 581..958 26..403 525 75.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20252236..20252437 142..343 1010 100 Plus
X 23542271 X 20253065..20253265 433..633 1005 100 Plus
X 23542271 X 20251631..20251758 17..144 640 100 Plus
X 23542271 X 20252506..20252597 342..433 460 100 Plus
3L 28110227 3L 19869109..19869308 403..204 250 75 Minus
3L 28110227 3L 19870380..19870498 144..26 220 79 Minus
2L 23513712 2L 7031898..7031949 230..179 215 94.2 Minus
3R 32079331 3R 24827498..24827577 270..191 205 83.8 Minus
Blast to na_te.dros performed on 2014-11-27 17:01:00 has no hits.

BS08757.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:51 Download gff for BS08757.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 1..615 17..631 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:36 Download gff for BS08757.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 252..871 14..633 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:12 Download gff for BS08757.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 294..906 17..629 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:51 Download gff for BS08757.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 252..871 14..633 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:28 Download gff for BS08757.complete
Subject Subject Range Query Range Percent Splice Strand
Rab10-RA 294..906 17..629 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:28 Download gff for BS08757.complete
Subject Subject Range Query Range Percent Splice Strand
X 20251631..20251757 17..143 100 -> Plus
X 20252238..20252437 144..343 100 -> Plus
X 20252508..20252597 344..433 100 -> Plus
X 20253066..20253261 434..629 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:12 Download gff for BS08757.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20122705..20122831 17..143 100 -> Plus
arm_X 20123312..20123511 144..343 100 -> Plus
arm_X 20123582..20123671 344..433 100 -> Plus
arm_X 20124140..20124335 434..629 100   Plus

BS08757.pep Sequence

Translation from 16 to 630

> BS08757.pep
MAKKTYDLLFKLLLIGDSGVGKTCILFRFSDDAFTSTFISTIGIDFKIKT
VELRGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNEKSFENI
VKWLRNIDEHANEDVEKMILGNKCDMTDKRVVNKERGEAIAREHGIRFME
TSAKSNINIERAFCELAEAILDKTSGRESAENQERVIIDRRNQEKAPGYS
KCCA*

BS08757.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rab10-PA 204 CG17060-PA 1..204 1..204 1052 100 Plus
Rab8-PC 207 CG8287-PC 3..181 4..182 706 76 Plus
Rab8-PA 207 CG8287-PA 3..181 4..182 706 76 Plus
Rab1-PA 205 CG3320-PA 8..193 6..190 551 57 Plus
Rab3-PA 220 CG7576-PA 14..187 2..175 531 54 Plus