Clone Sequence Records
BS08760.3prime Sequence
1008 bp (853 high quality bases) assembled on 2006-01-11
> BS08760.3prime
ATGGTCTAGAAAGCTTTTAATCTAGATTATCCTGGAATATTAACTTTATG
TAGCCAGTCGCTCCATCCAAGGGCGTCGCACAGAAGGGACAGACGGCCTG
AAATCCGTTGGTACCGTGAGGTATCTCCACATTGGCCCAGTATTTGACAG
TTTTTTCAGTCGCCATGTGTCCGCATGGATTGAACGCGTACGTCGGGGCG
CCCACGTCCACATAGAAGGCTGGTTCCAAGCCCATGCACAGGGTGACCAC
CGGACCGAGTTCCAGGCACATCGGACAGCGGCGGGCGCCAGTGTTCTCAT
CCTGACCCCAATCGTGATGGCCCTGGACATGGCCACAGTTTAAGTACACG
TAAGGCTGGTTCACCTGATCCCCAATGTTAACTTTGCGTGGTATAACCAG
CGTGTTCAGGCCCACCGGGCACTGTGGACGACCGGCATTAATGGCATCGA
TAAGTTTCTCCAAATCGTGTTTGGTCGGCGAATGCTGCAAGCCCTCGGCG
GAACGCCAAAGCAAGGTTGCGCCGCAGAGATCAATAAGTGTGCCATCCTG
CAGAATGTTGCATTCGTCATAGATCGGCTGCCCCTTTTGCTGGGCTGAAC
GCGATTCGCGAAGGCTGAAAACGTCGCCGCCCACGGAGCACTCGCGCCAT
AGTCCGCACTTGGCATTGCCGCCACAGAAGGATCCTTTGGGGTGCATAAT
CAGCACACCGTTGGTGGTCAGGCCATCGATTTCCACATTGTCCTGCCACT
TGGTGGCCTTCTCCCCAAGGAATATATTTCTGCTCGAATCAAAGCCGGCA
GCGAATATTCTCGCCTTGGCAGGCTCACAGCGGTTGACCAGAATGCGGCA
GGCGAACCGAGAAATTGTGCTCTGCATAACCTTGGCATCCTTTTTATCGC
CTGGCAGCGTATCCATCACCACAAAGTCAATGGGTGACTCCGATGAGCGT
CCCACCTGAAACATGTCCCGTTTCCGTGTCCTCCTTGTACTCCACGATTA
CCGCCTGG
BS08760.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5212-PA | 1275 | Pli-RA | 324..1275 | 968..17 | 4760 | 100 | Minus |
CG5212-PA | 1275 | Pli-RA | 285..325 | 1008..968 | 205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pli-RB | 2903 | CG5212-RB | 696..1687 | 1008..16 | 4940 | 99.9 | Minus |
Pli-RA | 1844 | CG5212-RA | 768..1759 | 1008..16 | 4940 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:15:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23862449..23862644 | 763..958 | 980 | 100 | Plus |
3R | 32079331 | 3R | 23862194..23862383 | 575..764 | 950 | 100 | Plus |
3R | 32079331 | 3R | 23861577..23861755 | 144..322 | 895 | 100 | Plus |
3R | 32079331 | 3R | 23861814..23861969 | 321..476 | 780 | 100 | Plus |
3R | 32079331 | 3R | 23861378..23861505 | 16..143 | 640 | 100 | Plus |
3R | 32079331 | 3R | 23862031..23862130 | 476..575 | 500 | 100 | Plus |
3R | 32079331 | 3R | 23862976..23863034 | 949..1008 | 235 | 96.7 | Plus |
Blast to na_te.dros performed 2015-02-11 11:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fw2 | 3961 | Fw2 FW2 3961bp | 2385..2441 | 787..842 | 111 | 68.4 | Plus |
BS08760.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:23 Download gff for
BS08760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-PA | 285..1275 | 17..1008 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:04 Download gff for
BS08760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5212-PA | 285..1275 | 17..1008 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:49:39 Download gff for
BS08760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RA | 768..1759 | 16..1008 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:48:14 Download gff for
BS08760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RA | 768..1759 | 16..1008 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:48:14 Download gff for
BS08760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23862194..23862382 | 575..763 | 100 | <- | Plus |
3R | 23862450..23862641 | 764..955 | 100 | <- | Plus |
3R | 23862983..23863034 | 956..1008 | 98 | | Plus |
3R | 23861378..23861505 | 16..143 | 100 | <- | Plus |
3R | 23861577..23861754 | 144..321 | 100 | <- | Plus |
3R | 23861815..23861968 | 322..475 | 100 | <- | Plus |
3R | 23862031..23862129 | 476..574 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:49:39 Download gff for
BS08760.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19687753..19687851 | 476..574 | 100 | <- | Plus |
arm_3R | 19687100..19687227 | 16..143 | 100 | <- | Plus |
arm_3R | 19687299..19687476 | 144..321 | 100 | <- | Plus |
arm_3R | 19687537..19687690 | 322..475 | 100 | <- | Plus |
arm_3R | 19687916..19688104 | 575..763 | 100 | <- | Plus |
arm_3R | 19688172..19688363 | 764..955 | 100 | <- | Plus |
arm_3R | 19688705..19688756 | 956..1008 | 98 | | Plus |
BS08760.5prime Sequence
924 bp (826 high quality bases) assembled on 2006-01-11
> BS08760.5prime
GAAGTTATCAGTCGACATGGTGAAACGCACCGACGGCACTGAATCTCCCA
TACTGGCTGAAGACGGTGGCGATGGTCATGATAAACCGCGATTGCGCTAC
GGTGAACTAGTGATACTCGGCTACAATGGTTACTTGCCACAGGGAGATCG
CGGTCGACGACGCTCCAAGTTTGTGCTCCACAAGCGGACGGAGGCGAGTG
GCGTCAAGCGTTCCAAGCACTACATCGTCCAATCGCCACAGACTTCGAAG
GCCATTCTGGATGCCAATCAGCATTCAATCTCGTACACACTCTCACGCAA
CCAGGCGGTAATCGTGGAGTACAAGGAGGACACGGAAACGGACATGTTTC
AGGTGGGACGCTCATCGGAGTCACCCATTGACTTTGTGGTGATGGATACG
CTGCCAGGCGATAAAAAGGATGCCAAGGTTATGCAGAGCACAATTTCTCG
GTTCGCCTGCCGCATTCTGGTCAACCGCTGTGAGCCTGCCAAGGCGAGAA
TATTCGCTGCCGGCTTTGATTCGAGCAGAAATATATTCCTTGGGGAGAAG
GCCACCAAGTGGCAGGACAATGTGGAAATCGATGGCCTGACCACCAACGG
TGTGCTGATTATGCACCCCAAAGGATCCTTCTGTGGCGGCAATGCCAAGT
GCGGACTATGGCGCGAGTGCTCCGTGGGCGGCGACGTTTTCAGCCTTCGC
GAATCGCGTTCAGCCCAGCAAAAGGGGCAGCCGATCTATGACGAATGCAA
CATTCTGCAGGATGGCACACTTATTGATCTCTGCGGCGCAACCTTGCTTT
GGCGTTCCGCCGAGGGCTTGCAGCATTCGCCGACCAAACACGATTTGGAG
AAACTTATCGATGCCATAAATGCCGGTCGTCCACAGTGCCCGGTGGGCCT
GAACACGCTGGTTATACCACGCAA
BS08760.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5212-PA | 1275 | Pli-RA | 1..908 | 17..924 | 4515 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pli-RB | 2903 | CG5212-RB | 412..1319 | 17..924 | 4525 | 99.9 | Plus |
Pli-RA | 1844 | CG5212-RA | 484..1391 | 17..924 | 4525 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:34:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23862976..23863215 | 359..120 | 1185 | 99.6 | Minus |
3R | 32079331 | 3R | 23862449..23862644 | 545..350 | 980 | 100 | Minus |
3R | 32079331 | 3R | 23862194..23862383 | 733..544 | 950 | 100 | Minus |
3R | 32079331 | 3R | 23862031..23862130 | 832..733 | 500 | 100 | Minus |
3R | 32079331 | 3R | 23865563..23865656 | 120..27 | 470 | 100 | Minus |
3R | 32079331 | 3R | 23861877..23861969 | 924..832 | 450 | 98.9 | Minus |
Blast to na_te.dros performed 2015-02-11 10:34:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fw2 | 3961 | Fw2 FW2 3961bp | 2385..2441 | 521..466 | 111 | 68.4 | Minus |
BS08760.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:24 Download gff for
BS08760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:06 Download gff for
BS08760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5212-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:58:23 Download gff for
BS08760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RA | 477..1389 | 9..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:09 Download gff for
BS08760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RA | 477..1389 | 9..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:09 Download gff for
BS08760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23861879..23861968 | 833..922 | 98 | <- | Minus |
3R | 23862031..23862129 | 734..832 | 100 | <- | Minus |
3R | 23862194..23862382 | 545..733 | 100 | <- | Minus |
3R | 23862450..23862641 | 353..544 | 100 | <- | Minus |
3R | 23862983..23863214 | 121..352 | 100 | <- | Minus |
3R | 23865563..23865660 | 21..120 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:58:23 Download gff for
BS08760.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19691285..19691382 | 21..120 | 97 | | Minus |
arm_3R | 19687601..19687690 | 833..922 | 98 | <- | Minus |
arm_3R | 19687753..19687851 | 734..832 | 100 | <- | Minus |
arm_3R | 19687916..19688104 | 545..733 | 100 | <- | Minus |
arm_3R | 19688172..19688363 | 353..544 | 100 | <- | Minus |
arm_3R | 19688705..19688936 | 121..352 | 100 | <- | Minus |
BS08760.complete Sequence
1307 bp (1307 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636258
> BS08760.complete
GAAGTTATCAGTCGACATGGTGAAACGCACCGACGGCACTGAATCTCCCA
TACTGGCTGAAGACGGTGGCGATGGTCATGATAAACCGCGATTGCGCTAC
GGTGAACTAGTGATACTCGGCTACAATGGTTACTTGCCACAGGGAGATCG
CGGTCGACGACGCTCCAAGTTTGTGCTCCACAAGCGGACGGAGGCGAGTG
GCGTCAAGCGTTCCAAGCACTACATCGTCCAATCGCCACAGACTTCGAAG
GCCATTCTGGATGCCAATCAGCATTCAATCTCGTACACACTCTCACGCAA
CCAGGCGGTAATCGTGGAGTACAAGGAGGACACGGAAACGGACATGTTTC
AGGTGGGACGCTCATCGGAGTCACCCATTGACTTTGTGGTGATGGATACG
CTGCCAGGCGATAAAAAGGATGCCAAGGTTATGCAGAGCACAATTTCTCG
GTTCGCCTGCCGCATTCTGGTCAACCGCTGTGAGCCTGCCAAGGCGAGAA
TATTCGCTGCCGGCTTTGATTCGAGCAGAAATATATTCCTTGGGGAGAAG
GCCACCAAGTGGCAGGACAATGTGGAAATCGATGGCCTGACCACCAACGG
TGTGCTGATTATGCACCCCAAAGGATCCTTCTGTGGCGGCAATGCCAAGT
GCGGACTATGGCGCGAGTGCTCCGTGGGCGGCGACGTTTTCAGCCTTCGC
GAATCGCGTTCAGCCCAGCAAAAGGGGCAGCCGATCTATGACGAATGCAA
CATTCTGCAGGATGGCACACTTATTGATCTCTGCGGCGCAACCTTGCTTT
GGCGTTCCGCCGAGGGCTTGCAGCATTCGCCGACCAAACACGATTTGGAG
AAACTTATCGATGCCATTAATGCCGGTCGTCCACAGTGCCCGGTGGGCCT
GAACACGCTGGTTATACCACGCAAAGTTAACATTGGGGATCAGGTGAACC
AGCCTTACGTGTACTTAAACTGTGGCCATGTCCAGGGCCATCACGATTGG
GGTCAGGATGAGAACACTGGCGCCCGCCGCTGTCCGATGTGCCTGGAACT
CGGTCCGGTGGTCACCCTGTGCATGGGCTTGGAACCAGCCTTCTATGTGG
ACGTGGGCGCCCCGACGTACGCGTTCAATCCATGCGGACACATGGCGACT
GAAAAAACTGTCAAATACTGGGCCAATGTGGAGATACCTCACGGTACCAA
CGGATTTCAGGCCGTCTGTCCCTTCTGTGCGACGCCCTTGGATGGAGCGA
CTGGCTACATAAAGTTAATATTCCAGGATAATCTAGATTAAAAGCTTTCT
AGACCAT
BS08760.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pli-RB | 1275 | CG5212-PB | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Pli-RA | 1275 | CG5212-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pli-RB | 2903 | CG5212-RB | 412..1687 | 17..1292 | 6380 | 100 | Plus |
Pli-RA | 1844 | CG5212-RA | 484..1759 | 17..1292 | 6380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23862976..23863215 | 359..120 | 1185 | 99.6 | Minus |
3R | 32079331 | 3R | 23862449..23862644 | 545..350 | 980 | 100 | Minus |
3R | 32079331 | 3R | 23862194..23862383 | 733..544 | 950 | 100 | Minus |
3R | 32079331 | 3R | 23861577..23861755 | 1164..986 | 895 | 100 | Minus |
3R | 32079331 | 3R | 23861814..23861969 | 987..832 | 780 | 100 | Minus |
3R | 32079331 | 3R | 23861378..23861505 | 1292..1165 | 640 | 100 | Minus |
3R | 32079331 | 3R | 23862031..23862130 | 832..733 | 500 | 100 | Minus |
3R | 32079331 | 3R | 23865563..23865656 | 120..27 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:28:28 has no hits.
BS08760.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:29 Download gff for
BS08760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RC | 1..1275 | 17..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:49 Download gff for
BS08760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RC | 423..1705 | 9..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:54 Download gff for
BS08760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RA | 484..1756 | 17..1289 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:29 Download gff for
BS08760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RC | 423..1705 | 9..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:06 Download gff for
BS08760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pli-RA | 484..1756 | 17..1289 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:06 Download gff for
BS08760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23862031..23862129 | 734..832 | 100 | <- | Minus |
3R | 23862194..23862382 | 545..733 | 100 | <- | Minus |
3R | 23862450..23862641 | 353..544 | 100 | <- | Minus |
3R | 23862983..23863214 | 121..352 | 100 | <- | Minus |
3R | 23865563..23865660 | 21..120 | 97 | | Minus |
3R | 23861381..23861505 | 1165..1289 | 100 | <- | Minus |
3R | 23861577..23861754 | 987..1164 | 100 | <- | Minus |
3R | 23861815..23861968 | 833..986 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:54 Download gff for
BS08760.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19687103..19687227 | 1165..1289 | 100 | <- | Minus |
arm_3R | 19687299..19687476 | 987..1164 | 100 | <- | Minus |
arm_3R | 19687537..19687690 | 833..986 | 100 | <- | Minus |
arm_3R | 19687753..19687851 | 734..832 | 100 | <- | Minus |
arm_3R | 19687916..19688104 | 545..733 | 100 | <- | Minus |
arm_3R | 19688172..19688363 | 353..544 | 100 | <- | Minus |
arm_3R | 19688705..19688936 | 121..352 | 100 | <- | Minus |
arm_3R | 19691285..19691382 | 21..120 | 97 | | Minus |
BS08760.pep Sequence
Translation from 16 to 1290
> BS08760.pep
MVKRTDGTESPILAEDGGDGHDKPRLRYGELVILGYNGYLPQGDRGRRRS
KFVLHKRTEASGVKRSKHYIVQSPQTSKAILDANQHSISYTLSRNQAVIV
EYKEDTETDMFQVGRSSESPIDFVVMDTLPGDKKDAKVMQSTISRFACRI
LVNRCEPAKARIFAAGFDSSRNIFLGEKATKWQDNVEIDGLTTNGVLIMH
PKGSFCGGNAKCGLWRECSVGGDVFSLRESRSAQQKGQPIYDECNILQDG
TLIDLCGATLLWRSAEGLQHSPTKHDLEKLIDAINAGRPQCPVGLNTLVI
PRKVNIGDQVNQPYVYLNCGHVQGHHDWGQDENTGARRCPMCLELGPVVT
LCMGLEPAFYVDVGAPTYAFNPCGHMATEKTVKYWANVEIPHGTNGFQAV
CPFCATPLDGATGYIKLIFQDNLD*
BS08760.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pli-PB | 424 | CG5212-PB | 1..424 | 1..424 | 2283 | 100 | Plus |
Pli-PA | 424 | CG5212-PA | 1..424 | 1..424 | 2283 | 100 | Plus |