Clone BS08760 Report

Search the DGRC for BS08760

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptPli-RA
Protein status:BS08760.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08760.3prime Sequence

1008 bp (853 high quality bases) assembled on 2006-01-11

> BS08760.3prime
ATGGTCTAGAAAGCTTTTAATCTAGATTATCCTGGAATATTAACTTTATG
TAGCCAGTCGCTCCATCCAAGGGCGTCGCACAGAAGGGACAGACGGCCTG
AAATCCGTTGGTACCGTGAGGTATCTCCACATTGGCCCAGTATTTGACAG
TTTTTTCAGTCGCCATGTGTCCGCATGGATTGAACGCGTACGTCGGGGCG
CCCACGTCCACATAGAAGGCTGGTTCCAAGCCCATGCACAGGGTGACCAC
CGGACCGAGTTCCAGGCACATCGGACAGCGGCGGGCGCCAGTGTTCTCAT
CCTGACCCCAATCGTGATGGCCCTGGACATGGCCACAGTTTAAGTACACG
TAAGGCTGGTTCACCTGATCCCCAATGTTAACTTTGCGTGGTATAACCAG
CGTGTTCAGGCCCACCGGGCACTGTGGACGACCGGCATTAATGGCATCGA
TAAGTTTCTCCAAATCGTGTTTGGTCGGCGAATGCTGCAAGCCCTCGGCG
GAACGCCAAAGCAAGGTTGCGCCGCAGAGATCAATAAGTGTGCCATCCTG
CAGAATGTTGCATTCGTCATAGATCGGCTGCCCCTTTTGCTGGGCTGAAC
GCGATTCGCGAAGGCTGAAAACGTCGCCGCCCACGGAGCACTCGCGCCAT
AGTCCGCACTTGGCATTGCCGCCACAGAAGGATCCTTTGGGGTGCATAAT
CAGCACACCGTTGGTGGTCAGGCCATCGATTTCCACATTGTCCTGCCACT
TGGTGGCCTTCTCCCCAAGGAATATATTTCTGCTCGAATCAAAGCCGGCA
GCGAATATTCTCGCCTTGGCAGGCTCACAGCGGTTGACCAGAATGCGGCA
GGCGAACCGAGAAATTGTGCTCTGCATAACCTTGGCATCCTTTTTATCGC
CTGGCAGCGTATCCATCACCACAAAGTCAATGGGTGACTCCGATGAGCGT
CCCACCTGAAACATGTCCCGTTTCCGTGTCCTCCTTGTACTCCACGATTA
CCGCCTGG

BS08760.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5212-PA 1275 Pli-RA 324..1275 968..17 4760 100 Minus
CG5212-PA 1275 Pli-RA 285..325 1008..968 205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
Pli-RB 2903 CG5212-RB 696..1687 1008..16 4940 99.9 Minus
Pli-RA 1844 CG5212-RA 768..1759 1008..16 4940 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23862449..23862644 763..958 980 100 Plus
3R 32079331 3R 23862194..23862383 575..764 950 100 Plus
3R 32079331 3R 23861577..23861755 144..322 895 100 Plus
3R 32079331 3R 23861814..23861969 321..476 780 100 Plus
3R 32079331 3R 23861378..23861505 16..143 640 100 Plus
3R 32079331 3R 23862031..23862130 476..575 500 100 Plus
3R 32079331 3R 23862976..23863034 949..1008 235 96.7 Plus
Blast to na_te.dros performed 2015-02-11 11:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
Fw2 3961 Fw2 FW2 3961bp 2385..2441 787..842 111 68.4 Plus

BS08760.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:23 Download gff for BS08760.3prime
Subject Subject Range Query Range Percent Splice Strand
Pli-PA 285..1275 17..1008 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:04 Download gff for BS08760.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5212-PA 285..1275 17..1008 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:49:39 Download gff for BS08760.3prime
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 768..1759 16..1008 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:48:14 Download gff for BS08760.3prime
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 768..1759 16..1008 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:48:14 Download gff for BS08760.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23862194..23862382 575..763 100 <- Plus
3R 23862450..23862641 764..955 100 <- Plus
3R 23862983..23863034 956..1008 98   Plus
3R 23861378..23861505 16..143 100 <- Plus
3R 23861577..23861754 144..321 100 <- Plus
3R 23861815..23861968 322..475 100 <- Plus
3R 23862031..23862129 476..574 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:49:39 Download gff for BS08760.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19687753..19687851 476..574 100 <- Plus
arm_3R 19687100..19687227 16..143 100 <- Plus
arm_3R 19687299..19687476 144..321 100 <- Plus
arm_3R 19687537..19687690 322..475 100 <- Plus
arm_3R 19687916..19688104 575..763 100 <- Plus
arm_3R 19688172..19688363 764..955 100 <- Plus
arm_3R 19688705..19688756 956..1008 98   Plus

BS08760.5prime Sequence

924 bp (826 high quality bases) assembled on 2006-01-11

> BS08760.5prime
GAAGTTATCAGTCGACATGGTGAAACGCACCGACGGCACTGAATCTCCCA
TACTGGCTGAAGACGGTGGCGATGGTCATGATAAACCGCGATTGCGCTAC
GGTGAACTAGTGATACTCGGCTACAATGGTTACTTGCCACAGGGAGATCG
CGGTCGACGACGCTCCAAGTTTGTGCTCCACAAGCGGACGGAGGCGAGTG
GCGTCAAGCGTTCCAAGCACTACATCGTCCAATCGCCACAGACTTCGAAG
GCCATTCTGGATGCCAATCAGCATTCAATCTCGTACACACTCTCACGCAA
CCAGGCGGTAATCGTGGAGTACAAGGAGGACACGGAAACGGACATGTTTC
AGGTGGGACGCTCATCGGAGTCACCCATTGACTTTGTGGTGATGGATACG
CTGCCAGGCGATAAAAAGGATGCCAAGGTTATGCAGAGCACAATTTCTCG
GTTCGCCTGCCGCATTCTGGTCAACCGCTGTGAGCCTGCCAAGGCGAGAA
TATTCGCTGCCGGCTTTGATTCGAGCAGAAATATATTCCTTGGGGAGAAG
GCCACCAAGTGGCAGGACAATGTGGAAATCGATGGCCTGACCACCAACGG
TGTGCTGATTATGCACCCCAAAGGATCCTTCTGTGGCGGCAATGCCAAGT
GCGGACTATGGCGCGAGTGCTCCGTGGGCGGCGACGTTTTCAGCCTTCGC
GAATCGCGTTCAGCCCAGCAAAAGGGGCAGCCGATCTATGACGAATGCAA
CATTCTGCAGGATGGCACACTTATTGATCTCTGCGGCGCAACCTTGCTTT
GGCGTTCCGCCGAGGGCTTGCAGCATTCGCCGACCAAACACGATTTGGAG
AAACTTATCGATGCCATAAATGCCGGTCGTCCACAGTGCCCGGTGGGCCT
GAACACGCTGGTTATACCACGCAA

BS08760.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5212-PA 1275 Pli-RA 1..908 17..924 4515 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
Pli-RB 2903 CG5212-RB 412..1319 17..924 4525 99.9 Plus
Pli-RA 1844 CG5212-RA 484..1391 17..924 4525 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:34:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23862976..23863215 359..120 1185 99.6 Minus
3R 32079331 3R 23862449..23862644 545..350 980 100 Minus
3R 32079331 3R 23862194..23862383 733..544 950 100 Minus
3R 32079331 3R 23862031..23862130 832..733 500 100 Minus
3R 32079331 3R 23865563..23865656 120..27 470 100 Minus
3R 32079331 3R 23861877..23861969 924..832 450 98.9 Minus
Blast to na_te.dros performed 2015-02-11 10:34:39
Subject Length Description Subject Range Query Range Score Percent Strand
Fw2 3961 Fw2 FW2 3961bp 2385..2441 521..466 111 68.4 Minus

BS08760.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:24 Download gff for BS08760.5prime
Subject Subject Range Query Range Percent Splice Strand
Pli-PA 1..906 17..922 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:06 Download gff for BS08760.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5212-PA 1..906 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:58:23 Download gff for BS08760.5prime
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 477..1389 9..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:36:09 Download gff for BS08760.5prime
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 477..1389 9..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:36:09 Download gff for BS08760.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23861879..23861968 833..922 98 <- Minus
3R 23862031..23862129 734..832 100 <- Minus
3R 23862194..23862382 545..733 100 <- Minus
3R 23862450..23862641 353..544 100 <- Minus
3R 23862983..23863214 121..352 100 <- Minus
3R 23865563..23865660 21..120 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:58:23 Download gff for BS08760.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19691285..19691382 21..120 97   Minus
arm_3R 19687601..19687690 833..922 98 <- Minus
arm_3R 19687753..19687851 734..832 100 <- Minus
arm_3R 19687916..19688104 545..733 100 <- Minus
arm_3R 19688172..19688363 353..544 100 <- Minus
arm_3R 19688705..19688936 121..352 100 <- Minus

BS08760.complete Sequence

1307 bp (1307 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636258

> BS08760.complete
GAAGTTATCAGTCGACATGGTGAAACGCACCGACGGCACTGAATCTCCCA
TACTGGCTGAAGACGGTGGCGATGGTCATGATAAACCGCGATTGCGCTAC
GGTGAACTAGTGATACTCGGCTACAATGGTTACTTGCCACAGGGAGATCG
CGGTCGACGACGCTCCAAGTTTGTGCTCCACAAGCGGACGGAGGCGAGTG
GCGTCAAGCGTTCCAAGCACTACATCGTCCAATCGCCACAGACTTCGAAG
GCCATTCTGGATGCCAATCAGCATTCAATCTCGTACACACTCTCACGCAA
CCAGGCGGTAATCGTGGAGTACAAGGAGGACACGGAAACGGACATGTTTC
AGGTGGGACGCTCATCGGAGTCACCCATTGACTTTGTGGTGATGGATACG
CTGCCAGGCGATAAAAAGGATGCCAAGGTTATGCAGAGCACAATTTCTCG
GTTCGCCTGCCGCATTCTGGTCAACCGCTGTGAGCCTGCCAAGGCGAGAA
TATTCGCTGCCGGCTTTGATTCGAGCAGAAATATATTCCTTGGGGAGAAG
GCCACCAAGTGGCAGGACAATGTGGAAATCGATGGCCTGACCACCAACGG
TGTGCTGATTATGCACCCCAAAGGATCCTTCTGTGGCGGCAATGCCAAGT
GCGGACTATGGCGCGAGTGCTCCGTGGGCGGCGACGTTTTCAGCCTTCGC
GAATCGCGTTCAGCCCAGCAAAAGGGGCAGCCGATCTATGACGAATGCAA
CATTCTGCAGGATGGCACACTTATTGATCTCTGCGGCGCAACCTTGCTTT
GGCGTTCCGCCGAGGGCTTGCAGCATTCGCCGACCAAACACGATTTGGAG
AAACTTATCGATGCCATTAATGCCGGTCGTCCACAGTGCCCGGTGGGCCT
GAACACGCTGGTTATACCACGCAAAGTTAACATTGGGGATCAGGTGAACC
AGCCTTACGTGTACTTAAACTGTGGCCATGTCCAGGGCCATCACGATTGG
GGTCAGGATGAGAACACTGGCGCCCGCCGCTGTCCGATGTGCCTGGAACT
CGGTCCGGTGGTCACCCTGTGCATGGGCTTGGAACCAGCCTTCTATGTGG
ACGTGGGCGCCCCGACGTACGCGTTCAATCCATGCGGACACATGGCGACT
GAAAAAACTGTCAAATACTGGGCCAATGTGGAGATACCTCACGGTACCAA
CGGATTTCAGGCCGTCTGTCCCTTCTGTGCGACGCCCTTGGATGGAGCGA
CTGGCTACATAAAGTTAATATTCCAGGATAATCTAGATTAAAAGCTTTCT
AGACCAT

BS08760.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pli-RB 1275 CG5212-PB 1..1275 17..1291 6375 100 Plus
Pli-RA 1275 CG5212-PA 1..1275 17..1291 6375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
Pli-RB 2903 CG5212-RB 412..1687 17..1292 6380 100 Plus
Pli-RA 1844 CG5212-RA 484..1759 17..1292 6380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23862976..23863215 359..120 1185 99.6 Minus
3R 32079331 3R 23862449..23862644 545..350 980 100 Minus
3R 32079331 3R 23862194..23862383 733..544 950 100 Minus
3R 32079331 3R 23861577..23861755 1164..986 895 100 Minus
3R 32079331 3R 23861814..23861969 987..832 780 100 Minus
3R 32079331 3R 23861378..23861505 1292..1165 640 100 Minus
3R 32079331 3R 23862031..23862130 832..733 500 100 Minus
3R 32079331 3R 23865563..23865656 120..27 470 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:28:28 has no hits.

BS08760.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:29 Download gff for BS08760.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RC 1..1275 17..1291 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:49 Download gff for BS08760.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RC 423..1705 9..1292 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:54 Download gff for BS08760.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 484..1756 17..1289 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:29 Download gff for BS08760.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RC 423..1705 9..1292 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:06 Download gff for BS08760.complete
Subject Subject Range Query Range Percent Splice Strand
Pli-RA 484..1756 17..1289 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:06 Download gff for BS08760.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23862031..23862129 734..832 100 <- Minus
3R 23862194..23862382 545..733 100 <- Minus
3R 23862450..23862641 353..544 100 <- Minus
3R 23862983..23863214 121..352 100 <- Minus
3R 23865563..23865660 21..120 97   Minus
3R 23861381..23861505 1165..1289 100 <- Minus
3R 23861577..23861754 987..1164 100 <- Minus
3R 23861815..23861968 833..986 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:54 Download gff for BS08760.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19687103..19687227 1165..1289 100 <- Minus
arm_3R 19687299..19687476 987..1164 100 <- Minus
arm_3R 19687537..19687690 833..986 100 <- Minus
arm_3R 19687753..19687851 734..832 100 <- Minus
arm_3R 19687916..19688104 545..733 100 <- Minus
arm_3R 19688172..19688363 353..544 100 <- Minus
arm_3R 19688705..19688936 121..352 100 <- Minus
arm_3R 19691285..19691382 21..120 97   Minus

BS08760.pep Sequence

Translation from 16 to 1290

> BS08760.pep
MVKRTDGTESPILAEDGGDGHDKPRLRYGELVILGYNGYLPQGDRGRRRS
KFVLHKRTEASGVKRSKHYIVQSPQTSKAILDANQHSISYTLSRNQAVIV
EYKEDTETDMFQVGRSSESPIDFVVMDTLPGDKKDAKVMQSTISRFACRI
LVNRCEPAKARIFAAGFDSSRNIFLGEKATKWQDNVEIDGLTTNGVLIMH
PKGSFCGGNAKCGLWRECSVGGDVFSLRESRSAQQKGQPIYDECNILQDG
TLIDLCGATLLWRSAEGLQHSPTKHDLEKLIDAINAGRPQCPVGLNTLVI
PRKVNIGDQVNQPYVYLNCGHVQGHHDWGQDENTGARRCPMCLELGPVVT
LCMGLEPAFYVDVGAPTYAFNPCGHMATEKTVKYWANVEIPHGTNGFQAV
CPFCATPLDGATGYIKLIFQDNLD*

BS08760.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
Pli-PB 424 CG5212-PB 1..424 1..424 2283 100 Plus
Pli-PA 424 CG5212-PA 1..424 1..424 2283 100 Plus