Clone BS08764 Report

Search the DGRC for BS08764

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG9104-RA
Protein status:BS08764.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08764.3prime Sequence

886 bp (795 high quality bases) assembled on 2006-01-11

> BS08764.3prime
ATGGTCTAGAAAGCTTTCACTTCCAGATCACAGTCACATTCGTGTCCTTC
TCGATATCCCGCTCGATGGTGCAGGGCGAGAGGCCCGTCTTGCAGCAGAT
CTCGTCAAAGCTGATCAGCCCGGTGTACATCTTCTGCCGCCCGGAAGGCA
CTGAGCCCGTAAACACCGGGTACTTGTGGATGCAGCGAATGAATCGGTGC
TGCAGCCCGAAGATCACCATGCGACGCTCATCGATGTTGTGGTGCTGGGG
GCACAATCTCTGGCAGATCGCTCGCAGAGTAACGCCGTGAGTCATCGAGG
CGTAGAACTGAAAGATGCGCTGAACACTGGGCAGCGTCTTGTCCGGACGC
AAGGCCACGTATTTCCGGCATGCGCCGCTCAGTGATGCGCTCTGGATGAG
ATGCTTTAGGTTCTGCGTCATGTACACGTTGCTGTACTTCAGGATTGGCA
GCAGCTGAACGACCCCGTAGTAGACCAGATTCTGTATGCACGACTTGACC
AGGTCCGTTTCCACGTCCGCTTCGGCGGCAATGCGGGCAACATGGTTGAT
TCCATTTATATAAGGCAGGATCTGTTGTGTGGTAAGGTCCCAGTTGTCCA
GCGGAGCATCGCGCAGGTTCGCCAGCAGCAGGGGCACCATGTGATCCTTG
ACCGGCGGCGGGTCCGGCTTGTGCATGACGATCTTCAGGTATATAGTGTT
ATCGCCCTCAACAATGGTGGCCACCTTCCGCTCGTTAAGGTCGCGTAGTA
CAGTCTCAAAGATGTTCTGTAGGCGGCGCTTGTCATCTTCGCGAGACAGG
AAGCACGACTCCTCCTCCATCATTATGAGGTACTCGGACAGCTTCTTGAC
GACCGGCTCGTACTGGACGCTCCTGGCCCGCGAGTC

BS08764.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-PA 1239 CG9104-RA 370..1239 886..17 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-RA 1707 CG9104-RA 495..1364 886..17 4350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16882852..16883408 17..573 2785 100 Plus
X 23542271 X 16883495..16883809 572..886 1575 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:14:46 has no hits.

BS08764.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:29 Download gff for BS08764.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-PA 370..1239 17..886 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:14 Download gff for BS08764.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-PA 370..1239 17..886 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:59:26 Download gff for BS08764.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 495..1364 17..886 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:17 Download gff for BS08764.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 495..1364 17..886 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:17 Download gff for BS08764.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16882852..16883406 17..571 100 <- Plus
X 16883495..16883809 572..886 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:59:26 Download gff for BS08764.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16777528..16777842 572..886 100   Plus
arm_X 16776885..16777439 17..571 100 <- Plus

BS08764.5prime Sequence

916 bp (856 high quality bases) assembled on 2006-01-11

> BS08764.5prime
GAAGTTATCAGTCGACATGCATTCCCATACGAATGAGACGGCTGCGACGT
CGACAACGGCGGGCGCGGTCACGAATGGAGCAGGCGGATCAGGAGCTGGA
GCAGCGGGTGCCCATGGCAGCACGGAGGGCAAGATCCGGTGCATCTTCCT
CAGCGAGTTTCATGCGACGGCGGGCTGCAAGATAAGCTGCCAGGTTCCTG
ATAACTACATATCCAAGGATGTGTTCGATGCTATCAATGTTTACATCATA
CCCAAGCAGCATCTTCAACGCTGCATTCTCACCGTCAACGCAATGGATGT
AAAGATAGTCGGCTATCCAGTGGGCATCCAGGATCAGCAGAAGTACGCAC
GGAATGCCTTCCTGTTTAACCTATGCTTTGTCTGCGACTCGCGGGCCAGG
AGCGTCCAGTACGAGCCGGTCGTCAAGAAGCTGTCCGAGTACCTCATAAT
GATGGAGGAGGAGTCGTGCTTCCTGTCTCGCGAAGATGACAAGCGCCGCC
TACAGAACATCTTTGAGACTGTACTACGCGACCTTAACGAGCGGAAGGTG
GCCACCATTGTTGAGGGCGATAACACTATATACCTGAAGATCGTCATGCA
CAAGCCGGACCCGCCGCCGGTCAAGGATCACATGGTGCCCCTGCTGCTGG
CGAACCTGCGCGATGCTCCGCTGGACAACTGGGACCTTACCACACAACAG
ATCCTGCCTTATATAAATGGAATCAACCATGTTGCCCGCATTGCCGCCGA
AGCGGACGTGGAAACGGACCTGGTCAAGTCGTGCATACAGAATCTGGTCT
ACTACGGGGTCGTTCAGCTGCTGCCAATCCTGAAGTACAGCAACGTGTAC
ATGACGCAGAACCTAAAGCATCTCATCCAGAGCGCATCACTGAGCGGCGC
ATGCCGGAAATACGTG

BS08764.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-PA 1239 CG9104-RA 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-RA 1707 CG9104-RA 125..1025 16..916 4505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16883495..16884004 700..191 2550 100 Minus
X 23542271 X 16883191..16883408 916..699 1090 100 Minus
X 23542271 X 16884062..16884241 195..16 900 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:33:21 has no hits.

BS08764.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:30 Download gff for BS08764.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-PA 1..900 17..916 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:16 Download gff for BS08764.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-PA 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:48:00 Download gff for BS08764.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 122..1025 13..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:36:13 Download gff for BS08764.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 122..1025 13..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:36:13 Download gff for BS08764.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16883191..16883406 701..916 100 <- Minus
X 16883495..16884001 194..700 100 <- Minus
X 16884064..16884244 13..193 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:48:00 Download gff for BS08764.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16777224..16777439 701..916 100 <- Minus
arm_X 16777528..16778034 194..700 100 <- Minus
arm_X 16778097..16778277 13..193 99   Minus

BS08764.complete Sequence

1271 bp (1271 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636259

> BS08764.complete
GAAGTTATCAGTCGACATGCATTCCCATACGAATGAGACGGCTGCGACGT
CGACAACGGCGGGCGCGGTCACGAATGGAGCAGGCGGATCAGGAGCTGGA
GCAGCGGGTGCCCATGGCAGCACGGAGGGCAAGATCCGGTGCATCTTCCT
CAGCGAGTTTCATGCGACGGCGGGCTGCAAGATAAGCTGCCAGGTTCCTG
ATAACTACATATCCAAGGATGTGTTCGATGCTATCAATGTTTACATCATA
CCCAAGCAGCATCTTCAACGCTGCATTCTCACCGTCAACGCAATGGATGT
AAAGATAGTCGGCTATCCAGTGGGCATCCAGGATCAGCAGAAGTACGCAC
GGAATGCCTTCCTGTTTAACCTATGCTTTGTCTGCGACTCGCGGGCCAGG
AGCGTCCAGTACGAGCCGGTCGTCAAGAAGCTGTCCGAGTACCTCATAAT
GATGGAGGAGGAGTCGTGCTTCCTGTCTCGCGAAGATGACAAGCGCCGCC
TACAGAACATCTTTGAGACTGTACTACGCGACCTTAACGAGCGGAAGGTG
GCCACCATTGTTGAGGGCGATAACACTATATACCTGAAGATCGTCATGCA
CAAGCCGGACCCGCCGCCGGTCAAGGATCACATGGTGCCCCTGCTGCTGG
CGAACCTGCGCGATGCTCCGCTGGACAACTGGGACCTTACCACACAACAG
ATCCTGCCTTATATAAATGGAATCAACCATGTTGCCCGCATTGCCGCCGA
AGCGGACGTGGAAACGGACCTGGTCAAGTCGTGCATACAGAATCTGGTCT
ACTACGGGGTCGTTCAGCTGCTGCCAATCCTGAAGTACAGCAACGTGTAC
ATGACGCAGAACCTAAAGCATCTCATCCAGAGCGCATCACTGAGCGGCGC
ATGCCGGAAATACGTGGCCTTGCGTCCGGACAAGACGCTGCCCAGTGTTC
AGCGCATCTTTCAGTTCTACGCCTCGATGACTCACGGCGTTACTCTGCGA
GCGATCTGCCAGAGATTGTGCCCCCAGCACCACAACATCGATGAGCGTCG
CATGGTGATCTTCGGGCTGCAGCACCGATTCATTCGCTGCATCCACAAGT
ACCCGGTGTTTACGGGCTCAGTGCCTTCCGGGCGGCAGAAGATGTACACC
GGGCTGATCAGCTTTGACGAGATCTGCTGCAAGACGGGCCTCTCGCCCTG
CACCATCGAGCGGGATATCGAGAAGGACACGAATGTGACTGTGATCTGGA
AGTGAAAGCTTTCTAGACCAT

BS08764.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-RA 1239 CG9104-PA 1..1239 17..1255 6195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-RA 1707 CG9104-RA 125..1364 16..1255 6200 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16882852..16883408 1255..699 2785 100 Minus
X 23542271 X 16883495..16884004 700..191 2550 100 Minus
X 23542271 X 16884062..16884241 195..16 900 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:35:44 has no hits.

BS08764.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:30 Download gff for BS08764.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 1..1239 17..1255 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:52 Download gff for BS08764.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 82..1324 13..1255 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:38 Download gff for BS08764.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 126..1363 17..1254 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:30 Download gff for BS08764.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 82..1324 13..1255 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:49 Download gff for BS08764.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 126..1363 17..1254 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:49 Download gff for BS08764.complete
Subject Subject Range Query Range Percent Splice Strand
X 16882853..16883406 701..1254 100 <- Minus
X 16883495..16884001 194..700 100 <- Minus
X 16884064..16884240 17..193 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:38 Download gff for BS08764.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16776886..16777439 701..1254 100 <- Minus
arm_X 16777528..16778034 194..700 100 <- Minus
arm_X 16778097..16778273 17..193 100   Minus

BS08764.pep Sequence

Translation from 16 to 1254

> BS08764.pep
MHSHTNETAATSTTAGAVTNGAGGSGAGAAGAHGSTEGKIRCIFLSEFHA
TAGCKISCQVPDNYISKDVFDAINVYIIPKQHLQRCILTVNAMDVKIVGY
PVGIQDQQKYARNAFLFNLCFVCDSRARSVQYEPVVKKLSEYLIMMEEES
CFLSREDDKRRLQNIFETVLRDLNERKVATIVEGDNTIYLKIVMHKPDPP
PVKDHMVPLLLANLRDAPLDNWDLTTQQILPYINGINHVARIAAEADVET
DLVKSCIQNLVYYGVVQLLPILKYSNVYMTQNLKHLIQSASLSGACRKYV
ALRPDKTLPSVQRIFQFYASMTHGVTLRAICQRLCPQHHNIDERRMVIFG
LQHRFIRCIHKYPVFTGSVPSGRQKMYTGLISFDEICCKTGLSPCTIERD
IEKDTNVTVIWK*

BS08764.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-PA 412 CG9104-PA 1..412 1..412 2168 100 Plus