Clone Sequence Records
BS08764.3prime Sequence
886 bp (795 high quality bases) assembled on 2006-01-11
> BS08764.3prime
ATGGTCTAGAAAGCTTTCACTTCCAGATCACAGTCACATTCGTGTCCTTC
TCGATATCCCGCTCGATGGTGCAGGGCGAGAGGCCCGTCTTGCAGCAGAT
CTCGTCAAAGCTGATCAGCCCGGTGTACATCTTCTGCCGCCCGGAAGGCA
CTGAGCCCGTAAACACCGGGTACTTGTGGATGCAGCGAATGAATCGGTGC
TGCAGCCCGAAGATCACCATGCGACGCTCATCGATGTTGTGGTGCTGGGG
GCACAATCTCTGGCAGATCGCTCGCAGAGTAACGCCGTGAGTCATCGAGG
CGTAGAACTGAAAGATGCGCTGAACACTGGGCAGCGTCTTGTCCGGACGC
AAGGCCACGTATTTCCGGCATGCGCCGCTCAGTGATGCGCTCTGGATGAG
ATGCTTTAGGTTCTGCGTCATGTACACGTTGCTGTACTTCAGGATTGGCA
GCAGCTGAACGACCCCGTAGTAGACCAGATTCTGTATGCACGACTTGACC
AGGTCCGTTTCCACGTCCGCTTCGGCGGCAATGCGGGCAACATGGTTGAT
TCCATTTATATAAGGCAGGATCTGTTGTGTGGTAAGGTCCCAGTTGTCCA
GCGGAGCATCGCGCAGGTTCGCCAGCAGCAGGGGCACCATGTGATCCTTG
ACCGGCGGCGGGTCCGGCTTGTGCATGACGATCTTCAGGTATATAGTGTT
ATCGCCCTCAACAATGGTGGCCACCTTCCGCTCGTTAAGGTCGCGTAGTA
CAGTCTCAAAGATGTTCTGTAGGCGGCGCTTGTCATCTTCGCGAGACAGG
AAGCACGACTCCTCCTCCATCATTATGAGGTACTCGGACAGCTTCTTGAC
GACCGGCTCGTACTGGACGCTCCTGGCCCGCGAGTC
BS08764.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9104-PA | 1239 | CG9104-RA | 370..1239 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9104-RA | 1707 | CG9104-RA | 495..1364 | 886..17 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16882852..16883408 | 17..573 | 2785 | 100 | Plus |
X | 23542271 | X | 16883495..16883809 | 572..886 | 1575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:14:46 has no hits.
BS08764.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:29 Download gff for
BS08764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-PA | 370..1239 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:14 Download gff for
BS08764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-PA | 370..1239 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:59:26 Download gff for
BS08764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 495..1364 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:17 Download gff for
BS08764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 495..1364 | 17..886 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:17 Download gff for
BS08764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16882852..16883406 | 17..571 | 100 | <- | Plus |
X | 16883495..16883809 | 572..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:59:26 Download gff for
BS08764.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16777528..16777842 | 572..886 | 100 | | Plus |
arm_X | 16776885..16777439 | 17..571 | 100 | <- | Plus |
BS08764.5prime Sequence
916 bp (856 high quality bases) assembled on 2006-01-11
> BS08764.5prime
GAAGTTATCAGTCGACATGCATTCCCATACGAATGAGACGGCTGCGACGT
CGACAACGGCGGGCGCGGTCACGAATGGAGCAGGCGGATCAGGAGCTGGA
GCAGCGGGTGCCCATGGCAGCACGGAGGGCAAGATCCGGTGCATCTTCCT
CAGCGAGTTTCATGCGACGGCGGGCTGCAAGATAAGCTGCCAGGTTCCTG
ATAACTACATATCCAAGGATGTGTTCGATGCTATCAATGTTTACATCATA
CCCAAGCAGCATCTTCAACGCTGCATTCTCACCGTCAACGCAATGGATGT
AAAGATAGTCGGCTATCCAGTGGGCATCCAGGATCAGCAGAAGTACGCAC
GGAATGCCTTCCTGTTTAACCTATGCTTTGTCTGCGACTCGCGGGCCAGG
AGCGTCCAGTACGAGCCGGTCGTCAAGAAGCTGTCCGAGTACCTCATAAT
GATGGAGGAGGAGTCGTGCTTCCTGTCTCGCGAAGATGACAAGCGCCGCC
TACAGAACATCTTTGAGACTGTACTACGCGACCTTAACGAGCGGAAGGTG
GCCACCATTGTTGAGGGCGATAACACTATATACCTGAAGATCGTCATGCA
CAAGCCGGACCCGCCGCCGGTCAAGGATCACATGGTGCCCCTGCTGCTGG
CGAACCTGCGCGATGCTCCGCTGGACAACTGGGACCTTACCACACAACAG
ATCCTGCCTTATATAAATGGAATCAACCATGTTGCCCGCATTGCCGCCGA
AGCGGACGTGGAAACGGACCTGGTCAAGTCGTGCATACAGAATCTGGTCT
ACTACGGGGTCGTTCAGCTGCTGCCAATCCTGAAGTACAGCAACGTGTAC
ATGACGCAGAACCTAAAGCATCTCATCCAGAGCGCATCACTGAGCGGCGC
ATGCCGGAAATACGTG
BS08764.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9104-PA | 1239 | CG9104-RA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9104-RA | 1707 | CG9104-RA | 125..1025 | 16..916 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16883495..16884004 | 700..191 | 2550 | 100 | Minus |
X | 23542271 | X | 16883191..16883408 | 916..699 | 1090 | 100 | Minus |
X | 23542271 | X | 16884062..16884241 | 195..16 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:33:21 has no hits.
BS08764.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:30 Download gff for
BS08764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:16 Download gff for
BS08764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-PA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:48:00 Download gff for
BS08764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 122..1025 | 13..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:36:13 Download gff for
BS08764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 122..1025 | 13..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:36:13 Download gff for
BS08764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16883191..16883406 | 701..916 | 100 | <- | Minus |
X | 16883495..16884001 | 194..700 | 100 | <- | Minus |
X | 16884064..16884244 | 13..193 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:48:00 Download gff for
BS08764.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16777224..16777439 | 701..916 | 100 | <- | Minus |
arm_X | 16777528..16778034 | 194..700 | 100 | <- | Minus |
arm_X | 16778097..16778277 | 13..193 | 99 | | Minus |
BS08764.complete Sequence
1271 bp (1271 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636259
> BS08764.complete
GAAGTTATCAGTCGACATGCATTCCCATACGAATGAGACGGCTGCGACGT
CGACAACGGCGGGCGCGGTCACGAATGGAGCAGGCGGATCAGGAGCTGGA
GCAGCGGGTGCCCATGGCAGCACGGAGGGCAAGATCCGGTGCATCTTCCT
CAGCGAGTTTCATGCGACGGCGGGCTGCAAGATAAGCTGCCAGGTTCCTG
ATAACTACATATCCAAGGATGTGTTCGATGCTATCAATGTTTACATCATA
CCCAAGCAGCATCTTCAACGCTGCATTCTCACCGTCAACGCAATGGATGT
AAAGATAGTCGGCTATCCAGTGGGCATCCAGGATCAGCAGAAGTACGCAC
GGAATGCCTTCCTGTTTAACCTATGCTTTGTCTGCGACTCGCGGGCCAGG
AGCGTCCAGTACGAGCCGGTCGTCAAGAAGCTGTCCGAGTACCTCATAAT
GATGGAGGAGGAGTCGTGCTTCCTGTCTCGCGAAGATGACAAGCGCCGCC
TACAGAACATCTTTGAGACTGTACTACGCGACCTTAACGAGCGGAAGGTG
GCCACCATTGTTGAGGGCGATAACACTATATACCTGAAGATCGTCATGCA
CAAGCCGGACCCGCCGCCGGTCAAGGATCACATGGTGCCCCTGCTGCTGG
CGAACCTGCGCGATGCTCCGCTGGACAACTGGGACCTTACCACACAACAG
ATCCTGCCTTATATAAATGGAATCAACCATGTTGCCCGCATTGCCGCCGA
AGCGGACGTGGAAACGGACCTGGTCAAGTCGTGCATACAGAATCTGGTCT
ACTACGGGGTCGTTCAGCTGCTGCCAATCCTGAAGTACAGCAACGTGTAC
ATGACGCAGAACCTAAAGCATCTCATCCAGAGCGCATCACTGAGCGGCGC
ATGCCGGAAATACGTGGCCTTGCGTCCGGACAAGACGCTGCCCAGTGTTC
AGCGCATCTTTCAGTTCTACGCCTCGATGACTCACGGCGTTACTCTGCGA
GCGATCTGCCAGAGATTGTGCCCCCAGCACCACAACATCGATGAGCGTCG
CATGGTGATCTTCGGGCTGCAGCACCGATTCATTCGCTGCATCCACAAGT
ACCCGGTGTTTACGGGCTCAGTGCCTTCCGGGCGGCAGAAGATGTACACC
GGGCTGATCAGCTTTGACGAGATCTGCTGCAAGACGGGCCTCTCGCCCTG
CACCATCGAGCGGGATATCGAGAAGGACACGAATGTGACTGTGATCTGGA
AGTGAAAGCTTTCTAGACCAT
BS08764.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:35:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9104-RA | 1239 | CG9104-PA | 1..1239 | 17..1255 | 6195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:35:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9104-RA | 1707 | CG9104-RA | 125..1364 | 16..1255 | 6200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16882852..16883408 | 1255..699 | 2785 | 100 | Minus |
X | 23542271 | X | 16883495..16884004 | 700..191 | 2550 | 100 | Minus |
X | 23542271 | X | 16884062..16884241 | 195..16 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:35:44 has no hits.
BS08764.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:30 Download gff for
BS08764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 1..1239 | 17..1255 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:52 Download gff for
BS08764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 82..1324 | 13..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:38 Download gff for
BS08764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 126..1363 | 17..1254 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:30 Download gff for
BS08764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 82..1324 | 13..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:49 Download gff for
BS08764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 126..1363 | 17..1254 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:49 Download gff for
BS08764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16882853..16883406 | 701..1254 | 100 | <- | Minus |
X | 16883495..16884001 | 194..700 | 100 | <- | Minus |
X | 16884064..16884240 | 17..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:38 Download gff for
BS08764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16776886..16777439 | 701..1254 | 100 | <- | Minus |
arm_X | 16777528..16778034 | 194..700 | 100 | <- | Minus |
arm_X | 16778097..16778273 | 17..193 | 100 | | Minus |
BS08764.pep Sequence
Translation from 16 to 1254
> BS08764.pep
MHSHTNETAATSTTAGAVTNGAGGSGAGAAGAHGSTEGKIRCIFLSEFHA
TAGCKISCQVPDNYISKDVFDAINVYIIPKQHLQRCILTVNAMDVKIVGY
PVGIQDQQKYARNAFLFNLCFVCDSRARSVQYEPVVKKLSEYLIMMEEES
CFLSREDDKRRLQNIFETVLRDLNERKVATIVEGDNTIYLKIVMHKPDPP
PVKDHMVPLLLANLRDAPLDNWDLTTQQILPYINGINHVARIAAEADVET
DLVKSCIQNLVYYGVVQLLPILKYSNVYMTQNLKHLIQSASLSGACRKYV
ALRPDKTLPSVQRIFQFYASMTHGVTLRAICQRLCPQHHNIDERRMVIFG
LQHRFIRCIHKYPVFTGSVPSGRQKMYTGLISFDEICCKTGLSPCTIERD
IEKDTNVTVIWK*
BS08764.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9104-PA | 412 | CG9104-PA | 1..412 | 1..412 | 2168 | 100 | Plus |