Clone BS08770 Report

Search the DGRC for BS08770

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptSF2-RA
Protein status:BS08770.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08770.3prime Sequence

798 bp (797 high quality bases) assembled on 2006-01-11

> BS08770.3prime
ATGGTCTAGAAAGCTTTTAATAGTTAGAACGTGAGCGAGACCTGGAATAA
GATTGACGTCGCACTGGGGAGTATGTGGGAGTGCCACGACGGCGCGGCCT
CGACGAGAATGAGCGCGAACGGGATCTGTCGCGGTAGTCACGGCTTCCAC
CTCCGCCGCTGCCGCCACCACCTCCACCGCTGCCGCCACCACCACCGCCT
CTGTCGTTATCACCGCTATCCTCGCGTACGCGAATGTAGGCAACCTCGCC
CTCATGCGATCGGAAGCGAGAGTCGTCCAATTTTTTGATTGCGTACTTCA
TGTCCTCGTGGCGCAGGAACTCAACGACGCCGGAACCATCCTTGTAAGTG
TCCGCGAAGCAGACGTCGCCGGCCTCGCGCATGTGATCCTTGAGATCTTG
CCACGATCCGGAGGCGGGCAGTCCAGTAACCATGACGCGGTACTGCGAGC
GCTTGGCTGGCGGTCCGCGTCCGCCCATCCGTCCCCCACCGTCGCGGCTT
CGGTCATTGCGGTTGCCGCCGCGGTAGCTTCCAGGACCACCGCCCCGCGG
GAACTCCACGCGCAGACGATACCCATCGTAGTCGTAGCCGTCGCGCGCCT
TCACCGCATCGTCGGCATCCCGCGCATCTTCGAACTCAACAAAAGCAAAT
GGCGGCCCACGCCGATTTTTCAGATCGACGAAAGTTACTTTGCCGAACTT
GTGGAACAGGTCCTGGATATCCTTGGTGCGTATATCTGGGGGAAGGTTGC
CCACATATATACGGCACTCGTTGCGTGATCCCATGTCGACTGATAACT

BS08770.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6987-PA 768 SF2-RA 1..768 784..17 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
SF2-RB 2576 CG6987-RB 98..866 784..16 3845 100 Minus
SF2-RA 1392 CG6987-RA 98..866 784..16 3845 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16341228..16341599 250..621 1860 100 Plus
3R 32079331 3R 16341727..16341891 620..784 825 100 Plus
3R 32079331 3R 16340822..16340948 126..252 635 100 Plus
3R 32079331 3R 16340653..16340766 16..129 570 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:18:56 has no hits.

BS08770.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:40 Download gff for BS08770.3prime
Subject Subject Range Query Range Percent Splice Strand
SF2-PA 1..768 17..784 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:30 Download gff for BS08770.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6987-PA 1..768 17..784 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:35:38 Download gff for BS08770.3prime
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 93..866 16..791 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:44:32 Download gff for BS08770.3prime
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 93..866 16..791 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:44:32 Download gff for BS08770.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16340653..16340762 16..125 100 <- Plus
3R 16340822..16340946 126..250 100 <- Plus
3R 16341229..16341598 251..620 100 <- Plus
3R 16341728..16341896 621..791 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:35:38 Download gff for BS08770.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12166951..12167320 251..620 100 <- Plus
arm_3R 12167450..12167618 621..791 97   Plus
arm_3R 12166375..12166484 16..125 100 <- Plus
arm_3R 12166544..12166668 126..250 100 <- Plus

BS08770.5prime Sequence

798 bp (780 high quality bases) assembled on 2006-01-11

> BS08770.5prime
GAAGTTATCAGTCGACATGGGATCACGCAACGAGTGCCGTATATATGTGG
GCAACCTTCCCCCAGATATACGCACCAAGGATATCCAGGACCTGTTCCAC
AAGTTCGGCAAAGTAACTTTCGTCGATCTGAAAAATCGGCGTGGGCCGCC
ATTTGCTTTTGTTGAGTTCGAAGATGCGCGGGATGCCGACGATGCGGTGA
AGGCGCGCGACGGCTACGACTACGATGGGTATCGTCTGCGCGTGGAGTTC
CCGCGGGGCGGTGGTCCTGGAAGCTACCGCGGCGGCAACCGCAATGACCG
AAGCCGCGACGGTGGGGGACGGATGGGCGGACGCGGACCGCCAGCCAAGC
GCTCGCAGTACCGCGTCATGGTTACTGGACTGCCCGCCTCCGGATCGTGG
CAAGATCTCAAGGATCACATGCGCGAGGCCGGCGACGTCTGCTTCGCGGA
CACTTACAAGGATGGTTCCGGCGTCGTTGAGTTCCTGCGCCACGAGGACA
TGAAGTACGCAATCAAAAAATTGGACGACTCTCGCTTCCGATCGCATGAG
GGCGAGGTTGCCTACATTCGCGTACGCGAGGATAGCGGTGATAACGACAG
AGGCGGTGGTGGTGGCGGCAGCGGTGGAGGTGGTGGCGGCAGCGGCGGAG
GTGGAAGCCGTGACTACCGCGACAGATCCCGTTCGCGCTCATTCTCGTCG
AGGCCGCGCCGTCGTGGCACTCCCACATACTCCCCAGTGCGACGTCAATC
TTATTCCAGGTCTCGCTCACGTTCTAACTATTAAAAGCTTTCTAGACC

BS08770.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6987-PA 768 SF2-RA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
SF2-RB 2576 CG6987-RB 98..866 17..785 3845 100 Plus
SF2-RA 1392 CG6987-RA 98..866 17..785 3845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16341228..16341599 551..180 1860 100 Minus
3R 32079331 3R 16341727..16341891 181..17 825 100 Minus
3R 32079331 3R 16340822..16340948 675..549 635 100 Minus
3R 32079331 3R 16340653..16340766 785..672 570 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:22:46 has no hits.

BS08770.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:41 Download gff for BS08770.5prime
Subject Subject Range Query Range Percent Splice Strand
SF2-PA 1..768 17..784 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:31 Download gff for BS08770.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6987-PA 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:22:51 Download gff for BS08770.5prime
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 93..866 10..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:52:32 Download gff for BS08770.5prime
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 93..866 10..785 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:52:32 Download gff for BS08770.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16340822..16340946 551..675 100 <- Minus
3R 16341229..16341598 181..550 100 <- Minus
3R 16341728..16341896 10..180 97   Minus
3R 16340653..16340762 676..785 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:22:51 Download gff for BS08770.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12166375..12166484 676..785 100 <- Minus
arm_3R 12166544..12166668 551..675 100 <- Minus
arm_3R 12166951..12167320 181..550 100 <- Minus
arm_3R 12167450..12167618 10..180 97   Minus

BS08770.complete Sequence

800 bp (800 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636260

> BS08770.complete
GAAGTTATCAGTCGACATGGGATCACGCAACGAGTGCCGTATATATGTGG
GCAACCTTCCCCCAGATATACGCACCAAGGATATCCAGGACCTGTTCCAC
AAGTTCGGCAAAGTAACTTTCGTCGATCTGAAAAATCGGCGTGGGCCGCC
ATTTGCTTTTGTTGAGTTCGAAGATGCGCGGGATGCCGACGATGCGGTGA
AGGCGCGCGACGGCTACGACTACGATGGGTATCGTCTGCGCGTGGAGTTC
CCGCGGGGCGGTGGTCCTGGAAGCTACCGCGGCGGCAACCGCAATGACCG
AAGCCGCGACGGTGGGGGACGGATGGGCGGACGCGGACCGCCAGCCAAGC
GCTCGCAGTACCGCGTCATGGTTACTGGACTGCCCGCCTCCGGATCGTGG
CAAGATCTCAAGGATCACATGCGCGAGGCCGGCGACGTCTGCTTCGCGGA
CACTTACAAGGATGGTTCCGGCGTCGTTGAGTTCCTGCGCCACGAGGACA
TGAAGTACGCAATCAAAAAATTGGACGACTCTCGCTTCCGATCGCATGAG
GGCGAGGTTGCCTACATTCGCGTACGCGAGGATAGCGGTGATAACGACAG
AGGCGGTGGTGGTGGCGGCAGCGGTGGAGGTGGTGGCGGCAGCGGCGGAG
GTGGAAGCCGTGACTACCGCGACAGATCCCGTTCGCGCTCATTCTCGTCG
AGGCCGCGCCGTCGTGGCACTCCCACATACTCCCCAGTGCGACGTCAATC
TTATTCCAGGTCTCGCTCACGTTCTAACTATTAAAAGCTTTCTAGACCAT

BS08770.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
SF2-RB 768 CG6987-PB 1..768 17..784 3840 100 Plus
SF2-RA 768 CG6987-PA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
SF2-RB 2576 CG6987-RB 98..866 17..785 3845 100 Plus
SF2-RA 1392 CG6987-RA 98..866 17..785 3845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16341228..16341599 551..180 1860 100 Minus
3R 32079331 3R 16341727..16341891 181..17 825 100 Minus
3R 32079331 3R 16340822..16340948 675..549 635 100 Minus
3R 32079331 3R 16340653..16340766 785..672 570 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:04:15 has no hits.

BS08770.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:44 Download gff for BS08770.complete
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:59 Download gff for BS08770.complete
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 89..862 10..785 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:55 Download gff for BS08770.complete
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 98..863 17..782 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:45 Download gff for BS08770.complete
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 89..862 10..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:19 Download gff for BS08770.complete
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 98..863 17..782 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:19 Download gff for BS08770.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16340656..16340762 676..782 100 <- Minus
3R 16340822..16340946 551..675 100 <- Minus
3R 16341229..16341598 181..550 100 <- Minus
3R 16341728..16341891 17..180 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:55 Download gff for BS08770.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12166378..12166484 676..782 100 <- Minus
arm_3R 12166544..12166668 551..675 100 <- Minus
arm_3R 12166951..12167320 181..550 100 <- Minus
arm_3R 12167450..12167613 17..180 100   Minus

BS08770.pep Sequence

Translation from 16 to 783

> BS08770.pep
MGSRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVE
FEDARDADDAVKARDGYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGG
GRMGGRGPPAKRSQYRVMVTGLPASGSWQDLKDHMREAGDVCFADTYKDG
SGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVREDSGDNDRGGGGG
GSGGGGGGSGGGGSRDYRDRSRSRSFSSRPRRRGTPTYSPVRRQSYSRSR
SRSNY*

BS08770.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
SF2-PB 255 CG6987-PB 1..255 1..255 1375 100 Plus
SF2-PA 255 CG6987-PA 1..255 1..255 1375 100 Plus
B52-PN 350 CG10851-PN 5..232 8..253 405 43.2 Plus
B52-PC 350 CG10851-PC 5..232 8..253 405 43.2 Plus
B52-PA 350 CG10851-PA 5..232 8..253 405 43.2 Plus