Clone Sequence Records
BS08770.3prime Sequence
798 bp (797 high quality bases) assembled on 2006-01-11
> BS08770.3prime
ATGGTCTAGAAAGCTTTTAATAGTTAGAACGTGAGCGAGACCTGGAATAA
GATTGACGTCGCACTGGGGAGTATGTGGGAGTGCCACGACGGCGCGGCCT
CGACGAGAATGAGCGCGAACGGGATCTGTCGCGGTAGTCACGGCTTCCAC
CTCCGCCGCTGCCGCCACCACCTCCACCGCTGCCGCCACCACCACCGCCT
CTGTCGTTATCACCGCTATCCTCGCGTACGCGAATGTAGGCAACCTCGCC
CTCATGCGATCGGAAGCGAGAGTCGTCCAATTTTTTGATTGCGTACTTCA
TGTCCTCGTGGCGCAGGAACTCAACGACGCCGGAACCATCCTTGTAAGTG
TCCGCGAAGCAGACGTCGCCGGCCTCGCGCATGTGATCCTTGAGATCTTG
CCACGATCCGGAGGCGGGCAGTCCAGTAACCATGACGCGGTACTGCGAGC
GCTTGGCTGGCGGTCCGCGTCCGCCCATCCGTCCCCCACCGTCGCGGCTT
CGGTCATTGCGGTTGCCGCCGCGGTAGCTTCCAGGACCACCGCCCCGCGG
GAACTCCACGCGCAGACGATACCCATCGTAGTCGTAGCCGTCGCGCGCCT
TCACCGCATCGTCGGCATCCCGCGCATCTTCGAACTCAACAAAAGCAAAT
GGCGGCCCACGCCGATTTTTCAGATCGACGAAAGTTACTTTGCCGAACTT
GTGGAACAGGTCCTGGATATCCTTGGTGCGTATATCTGGGGGAAGGTTGC
CCACATATATACGGCACTCGTTGCGTGATCCCATGTCGACTGATAACT
BS08770.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6987-PA | 768 | SF2-RA | 1..768 | 784..17 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SF2-RB | 2576 | CG6987-RB | 98..866 | 784..16 | 3845 | 100 | Minus |
SF2-RA | 1392 | CG6987-RA | 98..866 | 784..16 | 3845 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16341228..16341599 | 250..621 | 1860 | 100 | Plus |
3R | 32079331 | 3R | 16341727..16341891 | 620..784 | 825 | 100 | Plus |
3R | 32079331 | 3R | 16340822..16340948 | 126..252 | 635 | 100 | Plus |
3R | 32079331 | 3R | 16340653..16340766 | 16..129 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:18:56 has no hits.
BS08770.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:40 Download gff for
BS08770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-PA | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:30 Download gff for
BS08770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6987-PA | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:35:38 Download gff for
BS08770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 93..866 | 16..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:44:32 Download gff for
BS08770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 93..866 | 16..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:44:32 Download gff for
BS08770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16340653..16340762 | 16..125 | 100 | <- | Plus |
3R | 16340822..16340946 | 126..250 | 100 | <- | Plus |
3R | 16341229..16341598 | 251..620 | 100 | <- | Plus |
3R | 16341728..16341896 | 621..791 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:35:38 Download gff for
BS08770.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12166951..12167320 | 251..620 | 100 | <- | Plus |
arm_3R | 12167450..12167618 | 621..791 | 97 | | Plus |
arm_3R | 12166375..12166484 | 16..125 | 100 | <- | Plus |
arm_3R | 12166544..12166668 | 126..250 | 100 | <- | Plus |
BS08770.5prime Sequence
798 bp (780 high quality bases) assembled on 2006-01-11
> BS08770.5prime
GAAGTTATCAGTCGACATGGGATCACGCAACGAGTGCCGTATATATGTGG
GCAACCTTCCCCCAGATATACGCACCAAGGATATCCAGGACCTGTTCCAC
AAGTTCGGCAAAGTAACTTTCGTCGATCTGAAAAATCGGCGTGGGCCGCC
ATTTGCTTTTGTTGAGTTCGAAGATGCGCGGGATGCCGACGATGCGGTGA
AGGCGCGCGACGGCTACGACTACGATGGGTATCGTCTGCGCGTGGAGTTC
CCGCGGGGCGGTGGTCCTGGAAGCTACCGCGGCGGCAACCGCAATGACCG
AAGCCGCGACGGTGGGGGACGGATGGGCGGACGCGGACCGCCAGCCAAGC
GCTCGCAGTACCGCGTCATGGTTACTGGACTGCCCGCCTCCGGATCGTGG
CAAGATCTCAAGGATCACATGCGCGAGGCCGGCGACGTCTGCTTCGCGGA
CACTTACAAGGATGGTTCCGGCGTCGTTGAGTTCCTGCGCCACGAGGACA
TGAAGTACGCAATCAAAAAATTGGACGACTCTCGCTTCCGATCGCATGAG
GGCGAGGTTGCCTACATTCGCGTACGCGAGGATAGCGGTGATAACGACAG
AGGCGGTGGTGGTGGCGGCAGCGGTGGAGGTGGTGGCGGCAGCGGCGGAG
GTGGAAGCCGTGACTACCGCGACAGATCCCGTTCGCGCTCATTCTCGTCG
AGGCCGCGCCGTCGTGGCACTCCCACATACTCCCCAGTGCGACGTCAATC
TTATTCCAGGTCTCGCTCACGTTCTAACTATTAAAAGCTTTCTAGACC
BS08770.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6987-PA | 768 | SF2-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:22:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SF2-RB | 2576 | CG6987-RB | 98..866 | 17..785 | 3845 | 100 | Plus |
SF2-RA | 1392 | CG6987-RA | 98..866 | 17..785 | 3845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:22:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16341228..16341599 | 551..180 | 1860 | 100 | Minus |
3R | 32079331 | 3R | 16341727..16341891 | 181..17 | 825 | 100 | Minus |
3R | 32079331 | 3R | 16340822..16340948 | 675..549 | 635 | 100 | Minus |
3R | 32079331 | 3R | 16340653..16340766 | 785..672 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:22:46 has no hits.
BS08770.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:41 Download gff for
BS08770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:31 Download gff for
BS08770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6987-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:22:51 Download gff for
BS08770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 93..866 | 10..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:52:32 Download gff for
BS08770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 93..866 | 10..785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:52:32 Download gff for
BS08770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16340822..16340946 | 551..675 | 100 | <- | Minus |
3R | 16341229..16341598 | 181..550 | 100 | <- | Minus |
3R | 16341728..16341896 | 10..180 | 97 | | Minus |
3R | 16340653..16340762 | 676..785 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:22:51 Download gff for
BS08770.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12166375..12166484 | 676..785 | 100 | <- | Minus |
arm_3R | 12166544..12166668 | 551..675 | 100 | <- | Minus |
arm_3R | 12166951..12167320 | 181..550 | 100 | <- | Minus |
arm_3R | 12167450..12167618 | 10..180 | 97 | | Minus |
BS08770.complete Sequence
800 bp (800 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636260
> BS08770.complete
GAAGTTATCAGTCGACATGGGATCACGCAACGAGTGCCGTATATATGTGG
GCAACCTTCCCCCAGATATACGCACCAAGGATATCCAGGACCTGTTCCAC
AAGTTCGGCAAAGTAACTTTCGTCGATCTGAAAAATCGGCGTGGGCCGCC
ATTTGCTTTTGTTGAGTTCGAAGATGCGCGGGATGCCGACGATGCGGTGA
AGGCGCGCGACGGCTACGACTACGATGGGTATCGTCTGCGCGTGGAGTTC
CCGCGGGGCGGTGGTCCTGGAAGCTACCGCGGCGGCAACCGCAATGACCG
AAGCCGCGACGGTGGGGGACGGATGGGCGGACGCGGACCGCCAGCCAAGC
GCTCGCAGTACCGCGTCATGGTTACTGGACTGCCCGCCTCCGGATCGTGG
CAAGATCTCAAGGATCACATGCGCGAGGCCGGCGACGTCTGCTTCGCGGA
CACTTACAAGGATGGTTCCGGCGTCGTTGAGTTCCTGCGCCACGAGGACA
TGAAGTACGCAATCAAAAAATTGGACGACTCTCGCTTCCGATCGCATGAG
GGCGAGGTTGCCTACATTCGCGTACGCGAGGATAGCGGTGATAACGACAG
AGGCGGTGGTGGTGGCGGCAGCGGTGGAGGTGGTGGCGGCAGCGGCGGAG
GTGGAAGCCGTGACTACCGCGACAGATCCCGTTCGCGCTCATTCTCGTCG
AGGCCGCGCCGTCGTGGCACTCCCACATACTCCCCAGTGCGACGTCAATC
TTATTCCAGGTCTCGCTCACGTTCTAACTATTAAAAGCTTTCTAGACCAT
BS08770.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SF2-RB | 768 | CG6987-PB | 1..768 | 17..784 | 3840 | 100 | Plus |
SF2-RA | 768 | CG6987-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SF2-RB | 2576 | CG6987-RB | 98..866 | 17..785 | 3845 | 100 | Plus |
SF2-RA | 1392 | CG6987-RA | 98..866 | 17..785 | 3845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16341228..16341599 | 551..180 | 1860 | 100 | Minus |
3R | 32079331 | 3R | 16341727..16341891 | 181..17 | 825 | 100 | Minus |
3R | 32079331 | 3R | 16340822..16340948 | 675..549 | 635 | 100 | Minus |
3R | 32079331 | 3R | 16340653..16340766 | 785..672 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:04:15 has no hits.
BS08770.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:44 Download gff for
BS08770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:59 Download gff for
BS08770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 89..862 | 10..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:55 Download gff for
BS08770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 98..863 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:45 Download gff for
BS08770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 89..862 | 10..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:19 Download gff for
BS08770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 98..863 | 17..782 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:19 Download gff for
BS08770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16340656..16340762 | 676..782 | 100 | <- | Minus |
3R | 16340822..16340946 | 551..675 | 100 | <- | Minus |
3R | 16341229..16341598 | 181..550 | 100 | <- | Minus |
3R | 16341728..16341891 | 17..180 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:55 Download gff for
BS08770.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12166378..12166484 | 676..782 | 100 | <- | Minus |
arm_3R | 12166544..12166668 | 551..675 | 100 | <- | Minus |
arm_3R | 12166951..12167320 | 181..550 | 100 | <- | Minus |
arm_3R | 12167450..12167613 | 17..180 | 100 | | Minus |
BS08770.pep Sequence
Translation from 16 to 783
> BS08770.pep
MGSRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVE
FEDARDADDAVKARDGYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGG
GRMGGRGPPAKRSQYRVMVTGLPASGSWQDLKDHMREAGDVCFADTYKDG
SGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVREDSGDNDRGGGGG
GSGGGGGGSGGGGSRDYRDRSRSRSFSSRPRRRGTPTYSPVRRQSYSRSR
SRSNY*
BS08770.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SF2-PB | 255 | CG6987-PB | 1..255 | 1..255 | 1375 | 100 | Plus |
SF2-PA | 255 | CG6987-PA | 1..255 | 1..255 | 1375 | 100 | Plus |
B52-PN | 350 | CG10851-PN | 5..232 | 8..253 | 405 | 43.2 | Plus |
B52-PC | 350 | CG10851-PC | 5..232 | 8..253 | 405 | 43.2 | Plus |
B52-PA | 350 | CG10851-PA | 5..232 | 8..253 | 405 | 43.2 | Plus |