Clone BS08773 Report

Search the DGRC for BS08773

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptPapst2-RA
Protein status:BS08773.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08773.3prime Sequence

912 bp (822 high quality bases) assembled on 2006-01-11

> BS08773.3prime
ATGGTCTAGAAAGCTTCTAAACTTCGATGAGGAATTTGCGACTCGGTGAG
CGGGCAACCTTGGCTCCAAATTGCTTTATTCTCTGCCGGACGTCGGCCAA
CGTCAGCTTGTTCCTCTTGCTGTAGACATTGAGATATATGCCCAGGACAA
CGATGAGGCCCGACCACAGATATTGTAAGGTAAAGGGCTTGCTGAAAAGC
ACAAAGGAGAAGGCTATAGTCACAGCCTTGCGGGCGGTGGTCACTGTGGC
AGCTATGGGGGCACCACTACTCCTCACCAGAGCCAGCACAAACTGAATGC
CCAGATAGCCGGACAAACTAAAGAGGAAGCCATAGCCGAAGGTCTCAACG
GGATGCTCCAAACAGAATGCAAAGCCGCTGAAGAAGTTGCCGGTAACCAG
CATAATCACAAATAGGTACACAAAACCCAAGCCGTATGAGTAGAACACCA
CCTCACTGCTGGGCGCCTTGAATTCCCGCATCGCCTTCTCCTGGACATTG
CCAATGGCTGCGTCGCAGAGCAGCGCTCCCGAAATCATGGCCACACCAAG
CAGATTGAAATTGGGCGTCATCTGGGAGTCGGCCAGCGTGAACCAGGCCA
ATCCGATGCACATGCAGGTGGCTGCCGCAAAGTCCAGCAGTCCGTAGCGT
TTGCCCTGTATGAGGATGCTGCCCACCAGCACGGGAATGAGCTTGCAGCA
CTTGAAAATCACCTGGGTGGGATAGTTCAGGTAGCCGAGACTTGAGTTGG
ACAGACCCATGGTACCCAGCGTGAGAGCAGCCAGAATTAGGTATGTTCTC
ATGGGAATGCAACGTGGCTCCGGCTCAATGTTCCAAAAGGAACCCGCGCT
TATCCGATAGCCCTCCAGCCGCCGCTCCACCAAACCGAACCCGATGTAGT
AGCCAAACTGGA

BS08773.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7853-PA 1191 CG7853-RA 296..1191 912..17 4405 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
Papst2-RA 1551 CG7853-RA 565..1462 912..15 4445 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17043361..17043917 912..356 2740 99.5 Minus
3L 28110227 3L 17043972..17044155 357..174 920 100 Minus
3L 28110227 3L 17044218..17044376 173..15 795 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:33:36 has no hits.

BS08773.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:47 Download gff for BS08773.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7853-PA 297..1191 17..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:38 Download gff for BS08773.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7853-PA 297..1191 17..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:28:42 Download gff for BS08773.3prime
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 566..1462 15..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:38:36 Download gff for BS08773.3prime
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 566..1462 15..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:38:36 Download gff for BS08773.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17043362..17043917 356..911 99 -> Minus
3L 17043974..17044155 174..355 100 -> Minus
3L 17044218..17044376 15..173 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:28:42 Download gff for BS08773.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17036462..17037017 356..911 99 -> Minus
arm_3L 17037074..17037255 174..355 100 -> Minus
arm_3L 17037318..17037476 15..173 100   Minus

BS08773.5prime Sequence

887 bp (792 high quality bases) assembled on 2006-01-11

> BS08773.5prime
GAAGTTATCAGTCGACATGTATATAGACACATCCGCTAGCAGCAGAATGA
CCGATAATAAGGGGAGCGTTATCACCATTAATGGCGGCGAATCGGCGGGA
AACTCGCCGCCCTCGCAGCGGAAGTCCTCGACGTCGGAATCTCCGCCGGA
ACTCCGTATCCTTTGCTTTGACCTCACCTACTACAATCGCACAACTCAGT
TCCTGCTCAGCTGCGCCGGCGTCTTCTTCCTGTACATCCTGTACGGCTAT
CTGCAGGAGCTGATCTTCACCGTCGAAGGATTCAAACCCTACGGATGGTT
CCTCACGCTCGTCCAGTTTGGCTACTACATCGGCTTCGGTTTGGTGGAGC
GGCGGCTGGAGGGCTATCGGATAAGCGGCGGTTCCTTTTGGAACATTGAG
CCGGAGCCACGTTGCATTCCCATGAGAACATACCTAATTCTGGCTGCTCT
CACGCTGGGTACCATGGGTCTGTCCAACTCAAGTCTCGGCTACCTGAACT
ATCCCACCCAGGTGATTTTCAAGTGCTGCAAGCTCATTCCCGTGCTGGTG
GGCAGCATCCTCATACAGGGCAAACGCTACGGACTGCTGGACTTTGCGGC
AGCCACCTGCATGTGCATCGGATTGGCCTGGTTCACGCTGGCCGACTCCC
AGATGACGCCCAATTTCAATCTGCTTGGTGTGGCCATGATTTCGGGAGCG
CTGCTCTGCGACGCAGCCATTGGCAATGTCCAGGAGAAGGCGATGCGGGA
ATTCAAGGCGCCCAGCAGTGAGGTGGTGTTCTACTCATACGGCTTGGGTT
TTGTGTACCTATTTGTGATTATGCTGGTTACCGGCAACTTCTTCAGCGGC
TTTGCATTCTGTTTGGAGCATCCCGTTGAGACCTTCG

BS08773.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7853-PA 1191 CG7853-RA 1..871 17..887 4355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
Papst2-RA 1551 CG7853-RA 270..1140 17..887 4355 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17043066..17043917 17..868 4260 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:35:31 has no hits.

BS08773.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:48 Download gff for BS08773.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7853-PA 1..871 17..887 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:39 Download gff for BS08773.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7853-PA 1..871 17..887 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:35:38 Download gff for BS08773.5prime
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 264..1140 11..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:16:07 Download gff for BS08773.5prime
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 264..1140 11..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:16:07 Download gff for BS08773.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17043060..17043917 11..868 99 -> Plus
3L 17043974..17043992 869..887 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:35:38 Download gff for BS08773.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17036160..17037017 11..868 99 -> Plus
arm_3L 17037074..17037092 869..887 100   Plus

BS08773.complete Sequence

1223 bp (1223 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636261

> BS08773.complete
GAAGTTATCAGTCGACATGTATATAGACACATCCGCTAGCAGCAGAATGA
CCGATAATAAGGGGAGCGTTATCACCATTAATGGCGGCGAATCGGCGGGA
AACTCGCCGCCCTCGCAGCGGAAGTCCTCGACGTCGGAATCTCCGCCGGA
ACTCCGTATCCTTTGCTTTGACCTCACCTACTACAATCGCACAACTCAGT
TCCTGCTCAGCTGCGCCGGCGTCTTCTTCCTGTACATCCTGTACGGCTAT
CTGCAGGAGCTGATCTTCACCGTCGAAGGATTCAAACCCTACGGATGGTT
CCTCACGCTCGTCCAGTTTGGCTACTACATCGGCTTCGGTTTGGTGGAGC
GGCGGCTGGAGGGCTATCGGATAAGCGGCGGTTCCTTTTGGAACATTGAG
CCGGAGCCACGTTGCATTCCCATGAGAACATACCTAATTCTGGCTGCTCT
CACGCTGGGTACCATGGGTCTGTCCAACTCAAGTCTCGGCTACCTGAACT
ATCCCACCCAGGTGATTTTCAAGTGCTGCAAGCTCATTCCCGTGCTGGTG
GGCAGCATCCTCATACAGGGCAAACGCTACGGACTGCTGGACTTTGCGGC
AGCCACCTGCATGTGCATCGGATTGGCCTGGTTCACGCTGGCCGACTCCC
AGATGACGCCCAATTTCAATCTGCTTGGTGTGGCCATGATTTCGGGAGCG
CTGCTCTGCGACGCAGCCATTGGCAATGTCCAGGAGAAGGCGATGCGGGA
ATTCAAGGCGCCCAGCAGTGAGGTGGTGTTCTACTCATACGGCTTGGGTT
TTGTGTACCTATTTGTGATTATGCTGGTTACCGGCAACTTCTTCAGCGGC
TTTGCATTCTGTTTGGAGCATCCCGTTGAGACCTTCGGCTATGGCTTCCT
CTTTAGTTTGTCCGGCTATCTGGGCATTCAGTTTGTGCTGGCTCTGGTGA
GGAGTAGTGGTGCCCCCATAGCTGCCACAGTGACCACCGCCCGCAAGGCT
GTGACTATAGCCTTCTCCTTTGTGCTTTTCAGCAAGCCCTTTACCTTACA
ATATCTGTGGTCGGGCCTCATCGTTGTCCTGGGCATATATCTCAATGTCT
ACAGCAAGAGGAACAAGCTGACGTTGGCCGACGTCCGGCAGAGAATAAAG
CAATTTGGAGCCAAGGTTGCCCGCTCACCGAGTCGCAAATTCCTCATCGA
AGTTTAGAAGCTTTCTAGACCAT

BS08773.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:12
Subject Length Description Subject Range Query Range Score Percent Strand
Papst2-RA 1191 CG7853-PA 1..1191 17..1207 5955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:13
Subject Length Description Subject Range Query Range Score Percent Strand
Papst2-RA 1551 CG7853-RA 270..1462 17..1209 5965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17043066..17043917 17..868 4260 100 Plus
3L 28110227 3L 17043972..17044155 867..1050 920 100 Plus
3L 28110227 3L 17044218..17044376 1051..1209 795 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:59:11 has no hits.

BS08773.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:31 Download gff for BS08773.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 1..1191 17..1207 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:54 Download gff for BS08773.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 259..1457 11..1209 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:27 Download gff for BS08773.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 270..1460 17..1207 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:32 Download gff for BS08773.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 259..1457 11..1209 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:55 Download gff for BS08773.complete
Subject Subject Range Query Range Percent Splice Strand
Papst2-RA 270..1460 17..1207 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:55 Download gff for BS08773.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17043974..17044155 869..1050 100 -> Plus
3L 17044218..17044374 1051..1207 100   Plus
3L 17043066..17043917 17..868 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:27 Download gff for BS08773.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17037074..17037255 869..1050 100 -> Plus
arm_3L 17037318..17037474 1051..1207 100   Plus
arm_3L 17036166..17037017 17..868 100 -> Plus

BS08773.pep Sequence

Translation from 16 to 1206

> BS08773.pep
MYIDTSASSRMTDNKGSVITINGGESAGNSPPSQRKSSTSESPPELRILC
FDLTYYNRTTQFLLSCAGVFFLYILYGYLQELIFTVEGFKPYGWFLTLVQ
FGYYIGFGLVERRLEGYRISGGSFWNIEPEPRCIPMRTYLILAALTLGTM
GLSNSSLGYLNYPTQVIFKCCKLIPVLVGSILIQGKRYGLLDFAAATCMC
IGLAWFTLADSQMTPNFNLLGVAMISGALLCDAAIGNVQEKAMREFKAPS
SEVVFYSYGLGFVYLFVIMLVTGNFFSGFAFCLEHPVETFGYGFLFSLSG
YLGIQFVLALVRSSGAPIAATVTTARKAVTIAFSFVLFSKPFTLQYLWSG
LIVVLGIYLNVYSKRNKLTLADVRQRIKQFGAKVARSPSRKFLIEV*

BS08773.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Papst2-PA 396 CG7853-PA 1..396 1..396 2044 100 Plus
sll-PB 465 CG7623-PB 107..464 19..385 212 21.7 Plus
sll-PA 465 CG7623-PA 107..464 19..385 212 21.7 Plus
meigo-PB 338 CG5802-PB 7..321 60..371 210 25.6 Plus
meigo-PA 338 CG5802-PA 7..321 60..371 210 25.6 Plus