Clone Sequence Records
BS08774.3prime Sequence
917 bp (794 high quality bases) assembled on 2006-01-11
> BS08774.3prime
ATGGTCTAGAAAGCTTCTACATGTGTATCGTGGCCGCCGTGTAGCGGGCC
TCGCCACGCCTCCATGACCACTGGCTGGGACGGAACTGGATGAGCAGCTG
GCCGCTCTTGGTGTGCGGATTGCGGTACGCGTAGAAGAGCCACAGCGTCA
CGGCGAACACCAGACAGATGGGCACCATGAAGCCAAAGGCTACGCCCACA
TTCTTGTTGTCCGCTTCCGCCTTCGATAGCTCGGCATTGCCGACCTTTCC
GTCCGCATGGATATCACTGGAGTGATCCACTCCCGGCTTAATGTAAGCGG
TGGCATGTGGTGCCCTCGTACTCATCACGCTGGGCTCCGTGACCGGCGTG
GATGAGCCGCTGGATGATGTTGAGGTATTTGTCGCACCATTGGCACTGGC
ACCGCTGTTCGCAGAACCATTCTTACCCTGGCCGGCAGCATTGTTACCCT
TATCGCCGAGGGCCGGGCACAAACTACTGGTATGAATGGCGGTAGCCTCA
CATCCCATTTGGAGCCACTCGTGCTTTTTGCGGTCGGTACCCGTGGAGCA
GCGATTCAGCACCGAGCACCATAGGCACGTAAACGTAGTGTTGTGGTTGA
TGCACGAATTGCAGTCATTGTAGCCAAGGCAGGTGGGCTGTGCCGCCAGC
TTGATGATGGTGTTGTTGGTGATCTCGTGCTGCTGGAACGTGACACGGTG
GTACTCATAGATTGTCTTTCGGCGGGCAAAGAATAGTTGCTTGTCGATAA
TGTAGGCGTCGGAAAGGCCGACCTTGACCGGATGCTCCTTGTCCTGGATG
GAGTTGATGTTCGTGGGCACCAGCATGTATGCGAAAACAATGTCGCCACT
CTGGTACAGGGTCACGCTGAACGTAAACTTTGCCAAATCCGGCTTGTCCT
GCAGCGTCACATTCTCC
BS08774.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2221-PA | 1878 | l(1)G0289-RA | 1015..1878 | 880..17 | 4320 | 100 | Minus |
CG2221-PA | 1878 | l(1)G0289-RA | 978..1010 | 917..885 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0289-RC | 3493 | CG2221-RC | 1040..1940 | 917..17 | 4460 | 99.8 | Minus |
l(1)G0289-RB | 2328 | CG2221-RB | 1040..1940 | 917..17 | 4460 | 99.8 | Minus |
l(1)G0289-RA | 2856 | CG2221-RA | 1040..1940 | 917..17 | 4460 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:09:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10358086..10358505 | 86..505 | 2100 | 100 | Plus |
X | 23542271 | X | 10358918..10359105 | 730..917 | 895 | 98.4 | Plus |
X | 23542271 | X | 10358700..10358851 | 578..729 | 760 | 100 | Plus |
X | 23542271 | X | 10358562..10358636 | 504..578 | 375 | 100 | Plus |
X | 23542271 | X | 10357745..10357816 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 14:09:12 has no hits.
BS08774.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:49 Download gff for
BS08774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2221-PA | 978..1878 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:41 Download gff for
BS08774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2221-PA | 978..1878 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:57 Download gff for
BS08774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0289-RA | 1040..1943 | 14..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:34:00 Download gff for
BS08774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0289-RA | 1040..1943 | 14..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:34:00 Download gff for
BS08774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10357742..10357813 | 14..85 | 98 | <- | Plus |
X | 10358086..10358504 | 86..504 | 100 | <- | Plus |
X | 10358563..10358635 | 505..577 | 100 | <- | Plus |
X | 10358700..10358851 | 578..729 | 100 | <- | Plus |
X | 10358918..10359105 | 730..917 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:57 Download gff for
BS08774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10251775..10251846 | 14..85 | 98 | <- | Plus |
arm_X | 10252119..10252537 | 86..504 | 100 | <- | Plus |
arm_X | 10252596..10252668 | 505..577 | 100 | <- | Plus |
arm_X | 10252733..10252884 | 578..729 | 100 | <- | Plus |
arm_X | 10252951..10253138 | 730..917 | 98 | | Plus |
BS08774.5prime Sequence
915 bp (808 high quality bases) assembled on 2006-01-11
> BS08774.5prime
GAAGTTATCAGTCGACATGGCGAAGAGTGTCGGTAGTGCGTGCGCGCAAA
TTGCGATCCTTTTGGCCATCACTTGCAGTGCATCGGAACTTGCGTCGGCC
GTGTTGCATCAGGATACGTACGAGATAGTGGACACAAATCTGCCAAATAT
TGCCGCATACGGAGTAGTGCCACTGAGAACGGATCGACTGCACCGTCAAA
GACGAACCGTGCCCGTATCGCCACCGTTGCCCGCAGTCACCACATACCGA
GGCGCAGTGTCTGCCAATGCCACTGCGGAAGCAGGAGGAGCGGCAGGAGC
TGGCGGAGGAGTGGCTGCAGAGACCACGGTCACCACCGTGGACAATAAGG
CAGCGGGCGGTAGTGTGTCCTACAATGTGCACAATGTCGGAGTCAATGGC
ACTGGACAGCGCAAGACATACGATGTGGCACCGGCCGTCGATTCCAATAC
CACTAGCCAAATGGCGCCGGCTACCAAGAAGCCCACACTATTGGGCCAGT
CGGGCAATCCCAAGAAGGTGGCATCTTCTGTCGTCGCTGCAACCATGACG
GATCCCTCACCGGCGGTCATCGATGTGGACGTGTCGAAAGTAGTGGACGT
GCCCGAGGAAGAGATCGAGGCAGCGGTGAAGAATGCATCGCTGAAGGAGA
GCGTTGACTTCCACGAATACTACAACAGTGTGCTCTATGAGAACAAGGAC
GAGGTGGCCTCACTGTGGACCGAACTGAAGGCGACGCCCGAAAATATCAT
GCTTTCGTCGTCCCATCGCAGGGCCATGACGGTGGAGCTCAAGTTTGATT
TCCCCTTCTACGGACACTTTGTGCGCAACATCACGGTGGCCACCGGCGGA
TTCCTTTACACCGGCGAGTATGTCCACTCCTGGCTGGCGGGCACCCAGTA
CATTGCCCCGCTGAT
BS08774.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2221-PA | 1878 | l(1)G0289-RA | 1..899 | 17..915 | 4470 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0289-RC | 3493 | CG2221-RC | 63..961 | 17..915 | 4480 | 99.9 | Plus |
l(1)G0289-RB | 2328 | CG2221-RB | 63..961 | 17..915 | 4480 | 99.9 | Plus |
l(1)G0289-RA | 2856 | CG2221-RA | 63..961 | 17..915 | 4480 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10359353..10360163 | 915..105 | 4040 | 99.9 | Minus |
X | 23542271 | X | 10366124..10366211 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:39:34 has no hits.
BS08774.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:49 Download gff for
BS08774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2221-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:42 Download gff for
BS08774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2221-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:49:42 Download gff for
BS08774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0289-RA | 63..961 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:35 Download gff for
BS08774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0289-RA | 63..961 | 17..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:35 Download gff for
BS08774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10359353..10360163 | 105..915 | 99 | <- | Minus |
X | 10366124..10366211 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:49:42 Download gff for
BS08774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10253386..10254196 | 105..915 | 99 | <- | Minus |
arm_X | 10260157..10260244 | 17..104 | 100 | | Minus |
BS08774.complete Sequence
1910 bp assembled on 2008-08-14
GenBank Submission: FJ636262
> BS08774.complete
GAAGTTATCAGTCGACATGGCGAAGAGTGTCGGTAGTGCGTGCGCGCAAA
TTGCGATCCTTTTGGCCATCACTTGCAGTGCATCGGAACTTGCGTCGGCC
GTGTTGCATCAGGATACGTACGAGATAGTGGACACAAATCTGCCAAATAT
TGCCGCATACGGAGTAGTGCCACTGAGAACGGATCGACTGCACCGTCAAA
GACGAACCGTGCCCGTATCGCCACCGTTGCCCGCAGTCACCACATACCGA
GGCGCAGTGTCTGCCAATGCCACTGCGGAAGCAGGAGGAGCGGCAGGAGC
TGGCGGAGGAGTGGCTGCAGAGACCACGGTCACCACCGTGGACAATAAGG
CAGCGGGCGGTAGTGTGTCCTACAATGTGCACAATGTCGGAGTCAATGGC
ACTGGACAGCGCAAGACATACGATGTGGCACCGGCCGTCGATTCCAATAC
CACTAGCCAAATGGCGCCGGCTACCAAGAAGCCCACACTATTGGGCCAGT
CGGGCAATCCCAAGAAGGTGGCATCTTCTGTCGTCGCTGCAACCATGACG
GATCCCTCACCGGCGGTCATCGATGTGGACGTGTCGAAAGTAGTGGACGT
GCCCGAGGAAGAGATCGAGGCAGCGGTGAAGAATGCATCGCTGAAGGAGA
GCGTTGACTTCCACGAATACTACAACAGTGTGCTCTATGAGAACAAGGAC
GAGGTGGCCTCACTGTGGACCGAACTGAAGGCGACGCCCGAAAATATCAT
GCTTTCGTCGTCCCATCGCAGGGCCATGACGGTGGAGCTCAAGTTTGATT
TCCCCTTCTACGGACACTTTGTGCGCAACATCACGGTGGCCACCGGCGGA
TTCCTTTACACCGGCGAGTATGTCCACTCCTGGCTGGCGGCCACCCAGTA
CATTGCCCCGCTGATGGCCAATTTCGACACGAGCATGTCCAACGACTCGT
TTGTCCGATTGCATGACAATGGAACCGCCTTCACCGCCGTGTGGGAGAAT
GTGACGCTGCAGGACAAGCCGGATTTTGGCAAGTTTACGTTCAGCGTGAC
CCTGTACCAGAGTGGCGACATTGTTTTCGCATACATGCTGGTGCCCACGA
ACATCAACTCCATCCAGGACAAGGAGCATCCGGTCAAGGTCGGCCTTTCC
GACGCCTACATTATCGACAAGCAACTATTCTTTGCCCGCCGAAAGACAAT
CTATGAGTACCACCGTGTCACGTTCCAGCAGCACGAGATCACCAACAACA
CCATCATCAAGCTGGCGGCACAGCCCACCTGCCTTGGCTACAATGACTGC
AATTCGTGCATCAACCACAACACTACGTTTACGTGCCTATGGTGCTCGGT
GCTGAATCGCTGCTCCACGGGTACCGACCGCAAAAAGCACGAGTGGCTCC
AAATGGGATGTGAGGCTACCGCCATTCATACCAGTAGTTTGTGCCCGGCC
CTCGGCGATAAGGGTAACAATGCTGCCGGCCAGGGTAAGAATGGTTCTGC
GAACAGCGGTGCCAGTGCCAATGGTGCGACAAATACCTCAACATCATCCA
GCGGCTCATCCACGCCGGTCACGGAGCCCAGCGTGATGAGTACGAGGGCA
CCACATGCCACCGCTTACATTAAGCCGGGAGTGGATCACTCCAGTGATAT
CCATGCGGACGGAAAGGTCGGCAATGCCGAGCTATCGAAGGCGGAAGCGG
ACAACAAGAATGTGGGCGTAGCCTTTGGCTTCATGGTGCCCATCTGTCTG
GTGTTCGCCGTGACGCTGTGGCTCTTCTACGCGTACCGCAATCCGCACAC
CAAGAGCGGCCAGCTGCTCATCCAGTTCCGTCCCAGCCAGTGGTCATGGA
GGCGTGGCGAGGCCCGCTACACGGCGGCCACGATACACATGTAGAAGCTT
TCTAGACCAT
BS08774.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0289-RC | 1878 | CG2221-PC | 1..1878 | 17..1894 | 9390 | 100 | Plus |
l(1)G0289-RB | 1878 | CG2221-PB | 1..1878 | 17..1894 | 9390 | 100 | Plus |
l(1)G0289-RA | 1878 | CG2221-PA | 1..1878 | 17..1894 | 9390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0289-RC | 3493 | CG2221-RC | 63..1940 | 17..1894 | 9390 | 100 | Plus |
l(1)G0289-RB | 2328 | CG2221-RB | 63..1940 | 17..1894 | 9390 | 100 | Plus |
l(1)G0289-RA | 2856 | CG2221-RA | 63..1940 | 17..1894 | 9390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10359296..10360163 | 972..105 | 4340 | 100 | Minus |
X | 23542271 | X | 10358086..10358505 | 1825..1406 | 2100 | 100 | Minus |
X | 23542271 | X | 10358918..10359128 | 1181..971 | 1055 | 100 | Minus |
X | 23542271 | X | 10358700..10358851 | 1333..1182 | 760 | 100 | Minus |
X | 23542271 | X | 10366124..10366211 | 104..17 | 440 | 100 | Minus |
X | 23542271 | X | 10358562..10358636 | 1407..1333 | 375 | 100 | Minus |
X | 23542271 | X | 10357745..10357816 | 1894..1823 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:51:36 has no hits.
BS08774.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:34 Download gff for
BS08774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0289-RA | 103..1983 | 17..1897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:05 Download gff for
BS08774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0289-RA | 63..1940 | 17..1894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:39 Download gff for
BS08774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0289-RA | 103..1980 | 17..1894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:05 Download gff for
BS08774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0289-RA | 63..1940 | 17..1894 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:05 Download gff for
BS08774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10358918..10359127 | 972..1181 | 100 | <- | Minus |
X | 10357745..10357813 | 1826..1894 | 100 | <- | Minus |
X | 10358086..10358504 | 1407..1825 | 100 | <- | Minus |
X | 10358563..10358635 | 1334..1406 | 100 | <- | Minus |
X | 10358700..10358851 | 1182..1333 | 100 | <- | Minus |
X | 10359297..10360163 | 105..971 | 100 | <- | Minus |
X | 10366124..10366211 | 17..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:05 Download gff for
BS08774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10251778..10251846 | 1826..1894 | 100 | <- | Minus |
arm_X | 10252119..10252537 | 1407..1825 | 100 | <- | Minus |
arm_X | 10252596..10252668 | 1334..1406 | 100 | <- | Minus |
arm_X | 10252733..10252884 | 1182..1333 | 100 | <- | Minus |
arm_X | 10252951..10253160 | 972..1181 | 100 | <- | Minus |
arm_X | 10253330..10254196 | 105..971 | 100 | <- | Minus |
arm_X | 10260157..10260244 | 17..104 | 100 | | Minus |
BS08774.pep Sequence
Translation from 16 to 1893
> BS08774.pep
MAKSVGSACAQIAILLAITCSASELASAVLHQDTYEIVDTNLPNIAAYGV
VPLRTDRLHRQRRTVPVSPPLPAVTTYRGAVSANATAEAGGAAGAGGGVA
AETTVTTVDNKAAGGSVSYNVHNVGVNGTGQRKTYDVAPAVDSNTTSQMA
PATKKPTLLGQSGNPKKVASSVVAATMTDPSPAVIDVDVSKVVDVPEEEI
EAAVKNASLKESVDFHEYYNSVLYENKDEVASLWTELKATPENIMLSSSH
RRAMTVELKFDFPFYGHFVRNITVATGGFLYTGEYVHSWLAATQYIAPLM
ANFDTSMSNDSFVRLHDNGTAFTAVWENVTLQDKPDFGKFTFSVTLYQSG
DIVFAYMLVPTNINSIQDKEHPVKVGLSDAYIIDKQLFFARRKTIYEYHR
VTFQQHEITNNTIIKLAAQPTCLGYNDCNSCINHNTTFTCLWCSVLNRCS
TGTDRKKHEWLQMGCEATAIHTSSLCPALGDKGNNAAGQGKNGSANSGAS
ANGATNTSTSSSGSSTPVTEPSVMSTRAPHATAYIKPGVDHSSDIHADGK
VGNAELSKAEADNKNVGVAFGFMVPICLVFAVTLWLFYAYRNPHTKSGQL
LIQFRPSQWSWRRGEARYTAATIHM*
BS08774.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0289-PC | 625 | CG2221-PC | 1..625 | 1..625 | 3262 | 100 | Plus |
l(1)G0289-PB | 625 | CG2221-PB | 1..625 | 1..625 | 3262 | 100 | Plus |
l(1)G0289-PA | 625 | CG2221-PA | 1..625 | 1..625 | 3262 | 100 | Plus |