Clone BS08774 Report

Search the DGRC for BS08774

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptl(1)G0289-RA
Protein status:BS08774.pep: full length peptide match
Sequenced Size:1910

Clone Sequence Records

BS08774.3prime Sequence

917 bp (794 high quality bases) assembled on 2006-01-11

> BS08774.3prime
ATGGTCTAGAAAGCTTCTACATGTGTATCGTGGCCGCCGTGTAGCGGGCC
TCGCCACGCCTCCATGACCACTGGCTGGGACGGAACTGGATGAGCAGCTG
GCCGCTCTTGGTGTGCGGATTGCGGTACGCGTAGAAGAGCCACAGCGTCA
CGGCGAACACCAGACAGATGGGCACCATGAAGCCAAAGGCTACGCCCACA
TTCTTGTTGTCCGCTTCCGCCTTCGATAGCTCGGCATTGCCGACCTTTCC
GTCCGCATGGATATCACTGGAGTGATCCACTCCCGGCTTAATGTAAGCGG
TGGCATGTGGTGCCCTCGTACTCATCACGCTGGGCTCCGTGACCGGCGTG
GATGAGCCGCTGGATGATGTTGAGGTATTTGTCGCACCATTGGCACTGGC
ACCGCTGTTCGCAGAACCATTCTTACCCTGGCCGGCAGCATTGTTACCCT
TATCGCCGAGGGCCGGGCACAAACTACTGGTATGAATGGCGGTAGCCTCA
CATCCCATTTGGAGCCACTCGTGCTTTTTGCGGTCGGTACCCGTGGAGCA
GCGATTCAGCACCGAGCACCATAGGCACGTAAACGTAGTGTTGTGGTTGA
TGCACGAATTGCAGTCATTGTAGCCAAGGCAGGTGGGCTGTGCCGCCAGC
TTGATGATGGTGTTGTTGGTGATCTCGTGCTGCTGGAACGTGACACGGTG
GTACTCATAGATTGTCTTTCGGCGGGCAAAGAATAGTTGCTTGTCGATAA
TGTAGGCGTCGGAAAGGCCGACCTTGACCGGATGCTCCTTGTCCTGGATG
GAGTTGATGTTCGTGGGCACCAGCATGTATGCGAAAACAATGTCGCCACT
CTGGTACAGGGTCACGCTGAACGTAAACTTTGCCAAATCCGGCTTGTCCT
GCAGCGTCACATTCTCC

BS08774.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG2221-PA 1878 l(1)G0289-RA 1015..1878 880..17 4320 100 Minus
CG2221-PA 1878 l(1)G0289-RA 978..1010 917..885 165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0289-RC 3493 CG2221-RC 1040..1940 917..17 4460 99.8 Minus
l(1)G0289-RB 2328 CG2221-RB 1040..1940 917..17 4460 99.8 Minus
l(1)G0289-RA 2856 CG2221-RA 1040..1940 917..17 4460 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:09:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10358086..10358505 86..505 2100 100 Plus
X 23542271 X 10358918..10359105 730..917 895 98.4 Plus
X 23542271 X 10358700..10358851 578..729 760 100 Plus
X 23542271 X 10358562..10358636 504..578 375 100 Plus
X 23542271 X 10357745..10357816 17..88 360 100 Plus
Blast to na_te.dros performed on 2015-02-08 14:09:12 has no hits.

BS08774.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:49 Download gff for BS08774.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2221-PA 978..1878 17..917 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:41 Download gff for BS08774.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2221-PA 978..1878 17..917 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:52:57 Download gff for BS08774.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 1040..1943 14..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:34:00 Download gff for BS08774.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 1040..1943 14..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:34:00 Download gff for BS08774.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10357742..10357813 14..85 98 <- Plus
X 10358086..10358504 86..504 100 <- Plus
X 10358563..10358635 505..577 100 <- Plus
X 10358700..10358851 578..729 100 <- Plus
X 10358918..10359105 730..917 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:52:57 Download gff for BS08774.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10251775..10251846 14..85 98 <- Plus
arm_X 10252119..10252537 86..504 100 <- Plus
arm_X 10252596..10252668 505..577 100 <- Plus
arm_X 10252733..10252884 578..729 100 <- Plus
arm_X 10252951..10253138 730..917 98   Plus

BS08774.5prime Sequence

915 bp (808 high quality bases) assembled on 2006-01-11

> BS08774.5prime
GAAGTTATCAGTCGACATGGCGAAGAGTGTCGGTAGTGCGTGCGCGCAAA
TTGCGATCCTTTTGGCCATCACTTGCAGTGCATCGGAACTTGCGTCGGCC
GTGTTGCATCAGGATACGTACGAGATAGTGGACACAAATCTGCCAAATAT
TGCCGCATACGGAGTAGTGCCACTGAGAACGGATCGACTGCACCGTCAAA
GACGAACCGTGCCCGTATCGCCACCGTTGCCCGCAGTCACCACATACCGA
GGCGCAGTGTCTGCCAATGCCACTGCGGAAGCAGGAGGAGCGGCAGGAGC
TGGCGGAGGAGTGGCTGCAGAGACCACGGTCACCACCGTGGACAATAAGG
CAGCGGGCGGTAGTGTGTCCTACAATGTGCACAATGTCGGAGTCAATGGC
ACTGGACAGCGCAAGACATACGATGTGGCACCGGCCGTCGATTCCAATAC
CACTAGCCAAATGGCGCCGGCTACCAAGAAGCCCACACTATTGGGCCAGT
CGGGCAATCCCAAGAAGGTGGCATCTTCTGTCGTCGCTGCAACCATGACG
GATCCCTCACCGGCGGTCATCGATGTGGACGTGTCGAAAGTAGTGGACGT
GCCCGAGGAAGAGATCGAGGCAGCGGTGAAGAATGCATCGCTGAAGGAGA
GCGTTGACTTCCACGAATACTACAACAGTGTGCTCTATGAGAACAAGGAC
GAGGTGGCCTCACTGTGGACCGAACTGAAGGCGACGCCCGAAAATATCAT
GCTTTCGTCGTCCCATCGCAGGGCCATGACGGTGGAGCTCAAGTTTGATT
TCCCCTTCTACGGACACTTTGTGCGCAACATCACGGTGGCCACCGGCGGA
TTCCTTTACACCGGCGAGTATGTCCACTCCTGGCTGGCGGGCACCCAGTA
CATTGCCCCGCTGAT

BS08774.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2221-PA 1878 l(1)G0289-RA 1..899 17..915 4470 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0289-RC 3493 CG2221-RC 63..961 17..915 4480 99.9 Plus
l(1)G0289-RB 2328 CG2221-RB 63..961 17..915 4480 99.9 Plus
l(1)G0289-RA 2856 CG2221-RA 63..961 17..915 4480 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10359353..10360163 915..105 4040 99.9 Minus
X 23542271 X 10366124..10366211 104..17 440 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:39:34 has no hits.

BS08774.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:49 Download gff for BS08774.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2221-PA 1..899 17..915 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:42 Download gff for BS08774.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2221-PA 1..899 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:49:42 Download gff for BS08774.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 63..961 17..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:35 Download gff for BS08774.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 63..961 17..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:35 Download gff for BS08774.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10359353..10360163 105..915 99 <- Minus
X 10366124..10366211 17..104 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:49:42 Download gff for BS08774.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10253386..10254196 105..915 99 <- Minus
arm_X 10260157..10260244 17..104 100   Minus

BS08774.complete Sequence

1910 bp assembled on 2008-08-14

GenBank Submission: FJ636262

> BS08774.complete
GAAGTTATCAGTCGACATGGCGAAGAGTGTCGGTAGTGCGTGCGCGCAAA
TTGCGATCCTTTTGGCCATCACTTGCAGTGCATCGGAACTTGCGTCGGCC
GTGTTGCATCAGGATACGTACGAGATAGTGGACACAAATCTGCCAAATAT
TGCCGCATACGGAGTAGTGCCACTGAGAACGGATCGACTGCACCGTCAAA
GACGAACCGTGCCCGTATCGCCACCGTTGCCCGCAGTCACCACATACCGA
GGCGCAGTGTCTGCCAATGCCACTGCGGAAGCAGGAGGAGCGGCAGGAGC
TGGCGGAGGAGTGGCTGCAGAGACCACGGTCACCACCGTGGACAATAAGG
CAGCGGGCGGTAGTGTGTCCTACAATGTGCACAATGTCGGAGTCAATGGC
ACTGGACAGCGCAAGACATACGATGTGGCACCGGCCGTCGATTCCAATAC
CACTAGCCAAATGGCGCCGGCTACCAAGAAGCCCACACTATTGGGCCAGT
CGGGCAATCCCAAGAAGGTGGCATCTTCTGTCGTCGCTGCAACCATGACG
GATCCCTCACCGGCGGTCATCGATGTGGACGTGTCGAAAGTAGTGGACGT
GCCCGAGGAAGAGATCGAGGCAGCGGTGAAGAATGCATCGCTGAAGGAGA
GCGTTGACTTCCACGAATACTACAACAGTGTGCTCTATGAGAACAAGGAC
GAGGTGGCCTCACTGTGGACCGAACTGAAGGCGACGCCCGAAAATATCAT
GCTTTCGTCGTCCCATCGCAGGGCCATGACGGTGGAGCTCAAGTTTGATT
TCCCCTTCTACGGACACTTTGTGCGCAACATCACGGTGGCCACCGGCGGA
TTCCTTTACACCGGCGAGTATGTCCACTCCTGGCTGGCGGCCACCCAGTA
CATTGCCCCGCTGATGGCCAATTTCGACACGAGCATGTCCAACGACTCGT
TTGTCCGATTGCATGACAATGGAACCGCCTTCACCGCCGTGTGGGAGAAT
GTGACGCTGCAGGACAAGCCGGATTTTGGCAAGTTTACGTTCAGCGTGAC
CCTGTACCAGAGTGGCGACATTGTTTTCGCATACATGCTGGTGCCCACGA
ACATCAACTCCATCCAGGACAAGGAGCATCCGGTCAAGGTCGGCCTTTCC
GACGCCTACATTATCGACAAGCAACTATTCTTTGCCCGCCGAAAGACAAT
CTATGAGTACCACCGTGTCACGTTCCAGCAGCACGAGATCACCAACAACA
CCATCATCAAGCTGGCGGCACAGCCCACCTGCCTTGGCTACAATGACTGC
AATTCGTGCATCAACCACAACACTACGTTTACGTGCCTATGGTGCTCGGT
GCTGAATCGCTGCTCCACGGGTACCGACCGCAAAAAGCACGAGTGGCTCC
AAATGGGATGTGAGGCTACCGCCATTCATACCAGTAGTTTGTGCCCGGCC
CTCGGCGATAAGGGTAACAATGCTGCCGGCCAGGGTAAGAATGGTTCTGC
GAACAGCGGTGCCAGTGCCAATGGTGCGACAAATACCTCAACATCATCCA
GCGGCTCATCCACGCCGGTCACGGAGCCCAGCGTGATGAGTACGAGGGCA
CCACATGCCACCGCTTACATTAAGCCGGGAGTGGATCACTCCAGTGATAT
CCATGCGGACGGAAAGGTCGGCAATGCCGAGCTATCGAAGGCGGAAGCGG
ACAACAAGAATGTGGGCGTAGCCTTTGGCTTCATGGTGCCCATCTGTCTG
GTGTTCGCCGTGACGCTGTGGCTCTTCTACGCGTACCGCAATCCGCACAC
CAAGAGCGGCCAGCTGCTCATCCAGTTCCGTCCCAGCCAGTGGTCATGGA
GGCGTGGCGAGGCCCGCTACACGGCGGCCACGATACACATGTAGAAGCTT
TCTAGACCAT

BS08774.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0289-RC 1878 CG2221-PC 1..1878 17..1894 9390 100 Plus
l(1)G0289-RB 1878 CG2221-PB 1..1878 17..1894 9390 100 Plus
l(1)G0289-RA 1878 CG2221-PA 1..1878 17..1894 9390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0289-RC 3493 CG2221-RC 63..1940 17..1894 9390 100 Plus
l(1)G0289-RB 2328 CG2221-RB 63..1940 17..1894 9390 100 Plus
l(1)G0289-RA 2856 CG2221-RA 63..1940 17..1894 9390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10359296..10360163 972..105 4340 100 Minus
X 23542271 X 10358086..10358505 1825..1406 2100 100 Minus
X 23542271 X 10358918..10359128 1181..971 1055 100 Minus
X 23542271 X 10358700..10358851 1333..1182 760 100 Minus
X 23542271 X 10366124..10366211 104..17 440 100 Minus
X 23542271 X 10358562..10358636 1407..1333 375 100 Minus
X 23542271 X 10357745..10357816 1894..1823 360 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:51:36 has no hits.

BS08774.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:45:34 Download gff for BS08774.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 103..1983 17..1897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:05 Download gff for BS08774.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 63..1940 17..1894 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:39 Download gff for BS08774.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 103..1980 17..1894 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:05 Download gff for BS08774.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0289-RA 63..1940 17..1894 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:05 Download gff for BS08774.complete
Subject Subject Range Query Range Percent Splice Strand
X 10358918..10359127 972..1181 100 <- Minus
X 10357745..10357813 1826..1894 100 <- Minus
X 10358086..10358504 1407..1825 100 <- Minus
X 10358563..10358635 1334..1406 100 <- Minus
X 10358700..10358851 1182..1333 100 <- Minus
X 10359297..10360163 105..971 100 <- Minus
X 10366124..10366211 17..104 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:05 Download gff for BS08774.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10251778..10251846 1826..1894 100 <- Minus
arm_X 10252119..10252537 1407..1825 100 <- Minus
arm_X 10252596..10252668 1334..1406 100 <- Minus
arm_X 10252733..10252884 1182..1333 100 <- Minus
arm_X 10252951..10253160 972..1181 100 <- Minus
arm_X 10253330..10254196 105..971 100 <- Minus
arm_X 10260157..10260244 17..104 100   Minus

BS08774.pep Sequence

Translation from 16 to 1893

> BS08774.pep
MAKSVGSACAQIAILLAITCSASELASAVLHQDTYEIVDTNLPNIAAYGV
VPLRTDRLHRQRRTVPVSPPLPAVTTYRGAVSANATAEAGGAAGAGGGVA
AETTVTTVDNKAAGGSVSYNVHNVGVNGTGQRKTYDVAPAVDSNTTSQMA
PATKKPTLLGQSGNPKKVASSVVAATMTDPSPAVIDVDVSKVVDVPEEEI
EAAVKNASLKESVDFHEYYNSVLYENKDEVASLWTELKATPENIMLSSSH
RRAMTVELKFDFPFYGHFVRNITVATGGFLYTGEYVHSWLAATQYIAPLM
ANFDTSMSNDSFVRLHDNGTAFTAVWENVTLQDKPDFGKFTFSVTLYQSG
DIVFAYMLVPTNINSIQDKEHPVKVGLSDAYIIDKQLFFARRKTIYEYHR
VTFQQHEITNNTIIKLAAQPTCLGYNDCNSCINHNTTFTCLWCSVLNRCS
TGTDRKKHEWLQMGCEATAIHTSSLCPALGDKGNNAAGQGKNGSANSGAS
ANGATNTSTSSSGSSTPVTEPSVMSTRAPHATAYIKPGVDHSSDIHADGK
VGNAELSKAEADNKNVGVAFGFMVPICLVFAVTLWLFYAYRNPHTKSGQL
LIQFRPSQWSWRRGEARYTAATIHM*

BS08774.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0289-PC 625 CG2221-PC 1..625 1..625 3262 100 Plus
l(1)G0289-PB 625 CG2221-PB 1..625 1..625 3262 100 Plus
l(1)G0289-PA 625 CG2221-PA 1..625 1..625 3262 100 Plus