Clone Sequence Records
BS08775.3prime Sequence
944 bp (831 high quality bases) assembled on 2006-01-11
> BS08775.3prime
ATGGTCTAGAAAGCTTCTAGCTCTCCCAGACTTCGTCCCGCTGTTTGGCA
GCTAGCAGTTTGCGTTCTTTGGCTTCACGTAGTACCCGCCTCTCGTTCTC
CCGTTCCTGCGGCGCCGTGGGCAGCTTGACTCCCAGTGCACCCGATACCA
GTCGTCGGGCCAAGGCCGTGCAGGTTTCCGGACGCTGGCGATAGGGCTGC
ATTGACACCGCGCCGGCCTTCTTTGCCTTCAGTCGTGACTCCAGAGTGGC
TTCCGCAAGTGGCTTCAACTTGACAAACGGATGCCCCATCGTCAGCACCT
CAGCAGCAATGCGGGAACTGCTGAACACAGCCAGGGCATGGGTATCGTCT
ACCCACTTGATGTCGAAACCACTGCCCCTGTACTGGGCGAAAAGCATGAG
CAGGTCGGGAGTTTTGAACTCCACTGGGAAATTGGACACCTCCAGAACGT
GCGGAAATTCCTCTTCGTTGAGCAGTTGTTGTTTAATGTGAAAGACCGTA
TAGTCCATTTTGGGCAGCTCTATTTTGCACTTGCCCACGGATTCAGTCAG
TTCTTGGAGTAACTTGGGATCCAGACAGTCGCCGCTCTCGTCGAACATCT
TCTCCCAGTCGTCCTCGTCCTCCTCGTCATCGTCTTCGGTGGTGCTGTCT
ACAGGTGGTTTCGCTGTGGCTGATGCTTGCGGGGATGTGGGGATGGCCTT
TGTTGCCGATGTCTCTATTTTCTCGGGAATCTCCAGCACATCTGAGTTGA
AGGTTTGTTTCATGATGCGCCGATTGCTGCGATTGATTTCCTTTGAGGCT
CGCTGCAGCTCGCGCACATCGTTATCACATTTGGCCGGCTCCTCGCCATT
GGTGCTCCTGGCCGCCACCACATCCTCGATGCGCAGCGGAGGCGATGCCT
GGCTTTTGCCATTGCTGGCTGATTTGTTGCCATTGCCTGGCTTT
BS08775.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-PA | 1608 | CG2162-RA | 681..1608 | 944..17 | 4640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:34:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-RF | 1669 | CG2162-RF | 249..1177 | 944..16 | 4645 | 100 | Minus |
| CG2162-RE | 2580 | CG2162-RE | 1160..2088 | 944..16 | 4645 | 100 | Minus |
| CG2162-RA | 2580 | CG2162-RA | 1160..2088 | 944..16 | 4645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3038962..3039259 | 792..495 | 1490 | 100 | Minus |
| 3L | 28110227 | 3L | 3039578..3039818 | 307..67 | 1205 | 100 | Minus |
| 3L | 28110227 | 3L | 3039325..3039515 | 497..307 | 955 | 100 | Minus |
| 3L | 28110227 | 3L | 3038752..3038906 | 944..790 | 775 | 100 | Minus |
| 3L | 28110227 | 3L | 3039925..3039977 | 68..16 | 265 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 17:33:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 2328..2365 | 663..626 | 109 | 76.3 | Minus |
BS08775.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:51 Download gff for
BS08775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-PA | 681..1608 | 17..944 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:43 Download gff for
BS08775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-PA | 681..1608 | 17..944 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:37:04 Download gff for
BS08775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RB | 1089..2017 | 16..944 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:09:38 Download gff for
BS08775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RA | 1160..2088 | 16..944 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:09:38 Download gff for
BS08775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3038752..3038905 | 791..944 | 100 | -> | Minus |
| 3L | 3039579..3039818 | 67..306 | 100 | -> | Minus |
| 3L | 3039927..3039977 | 16..66 | 100 | | Minus |
| 3L | 3038964..3039257 | 497..790 | 100 | -> | Minus |
| 3L | 3039326..3039515 | 307..496 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:37:04 Download gff for
BS08775.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3038752..3038905 | 791..944 | 100 | -> | Minus |
| arm_3L | 3038964..3039257 | 497..790 | 100 | -> | Minus |
| arm_3L | 3039326..3039515 | 307..496 | 100 | -> | Minus |
| arm_3L | 3039579..3039818 | 67..306 | 100 | -> | Minus |
| arm_3L | 3039927..3039977 | 16..66 | 100 | | Minus |
BS08775.5prime Sequence
972 bp (842 high quality bases) assembled on 2006-01-11
> BS08775.5prime
GAAGTTATCAGTCGACATGGGCGTTAAGAAGCATATCAGCGAGACTCCAT
TAAGCAAATCGAATTCGGTGGATTTATACAGGCCGCCAGCGTTGAGGAAC
AATAGCAATAACAACAACAGCAGCAGCGAGGAAGCAGCTGCAGTAAACGA
AGCTATAACAACACCATTAGCTGCAGGAACAGCAACCACTGCATCTACAA
GTCCTACCTCCAAAGAATCCCCAAACAGAGAGGCGGACGCCTCAGCAGCA
GCAGCGGCGGCGGCGACACGACGTGAACGCCGTCCCGATCGAGCGGTTTA
TGTGCCAAGGGCACGACGCAGTCAAACTACACCACCGACTACTACAACAA
CAACAACGGCGGCGGCAGCGACAGCGGTTGCAACAACATCACCACCAGCA
GCAGCAGCGGTGGTCGCAGCAACAATTACAACAGCGCCGGATTCCCCGCC
AGTTGCAGATACACAGCCGAGCAAAGCGGACGACGTCAACGGTCAGCCGC
CGTCCAAGTCGAAGAAAAGCAAATCGCATCGGGAGCGCAGAGAACGCGCA
AAGAAAACGACAACAGCTACAACGGCCGATAACGCCACTGTACTGGTTAT
ATCAGCATCTGAGAACGATACTCAATCCAACGAAGAACACCGACCGGCAA
AGCCAGCGGACTGTGATAAGGAGATCATGAGCGGCGCCCAGCGTACAAAG
CCAGGCAATGGCAACAAATCAGCCAGCAATGGCAAAAGCCAGGCATCGCC
TCCGCTGCGCATCGAGGATGTGGTGGCGGCCAGGAGCACCAATGGCGAGG
AGCCGGCCAAATGTGATAACGATGTGCGCGAGCTGCAGCGAGCCTCAAAG
GAAATCAATCGCAGCAATCGGCGCATCATGAAACAAACCTTCAACTCAGA
TGTGCTGGAGATTCCCGAAGAAATAGAGACATCGGCAACAAAGGGCATCC
CCACATCCCCGCAAGCATCAGC
BS08775.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-PA | 1608 | CG2162-RA | 1..956 | 17..972 | 4705 | 99.6 | Plus |
| CG3619-PA | 2502 | Dl-RA | 2083..2109 | 239..265 | 135 | 100 | Plus |
| CG3619-PB | 2502 | Dl-RB | 2083..2109 | 239..265 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-RE | 2580 | CG2162-RE | 480..1435 | 17..972 | 4735 | 99.7 | Plus |
| CG2162-RA | 2580 | CG2162-RA | 480..1435 | 17..972 | 4735 | 99.7 | Plus |
| CG2162-RF | 1669 | CG2162-RF | 1..524 | 449..972 | 2575 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3038121..3038567 | 227..673 | 2235 | 100 | Plus |
| 3L | 28110227 | 3L | 3038727..3038906 | 672..851 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 3037784..3037961 | 51..228 | 890 | 100 | Plus |
| 3L | 28110227 | 3L | 3038962..3039085 | 849..972 | 575 | 97.6 | Plus |
Blast to na_te.dros performed 2015-02-12 01:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..7091 | 72..438 | 288 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2665 | 98..391 | 286 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2276..2666 | 53..431 | 274 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6862 | 325..464 | 243 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6955 | 345..578 | 224 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2243..2539 | 87..403 | 214 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2484 | 325..497 | 213 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2425..2535 | 325..435 | 213 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6685..6878 | 72..261 | 212 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..7089 | 98..409 | 212 | 53.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6689..6870 | 275..457 | 210 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2593..2898 | 130..435 | 208 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..7046 | 325..593 | 200 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6923 | 363..573 | 195 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2550 | 224..474 | 191 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6840..7056 | 325..537 | 191 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..7057 | 157..492 | 189 | 54.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2971 | 99..268 | 188 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2391 | 351..435 | 182 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2639 | 325..578 | 178 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6952 | 152..407 | 176 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6911 | 95..186 | 175 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2782..2894 | 92..209 | 173 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2421 | 325..408 | 168 | 66.7 | Plus |
| BS | 5142 | BS BS 5142bp | 2011..2108 | 338..435 | 166 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1148 | 331..408 | 156 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1585 | 323..424 | 154 | 68.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3236..3346 | 341..445 | 144 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6413..6820 | 339..741 | 141 | 54.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2377 | 133..199 | 137 | 67.2 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11057..11126 | 359..424 | 134 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2898..3012 | 330..449 | 129 | 59.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3292..3344 | 325..377 | 121 | 69.8 | Plus |
| BS | 5142 | BS BS 5142bp | 2052..2116 | 343..407 | 118 | 64.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6033..6093 | 348..408 | 115 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6447..6591 | 92..230 | 114 | 57.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1149 | 380..463 | 114 | 59.5 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 819..865 | 95..143 | 114 | 73.5 | Plus |
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 554..629 | 325..400 | 110 | 60.5 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2636..2702 | 99..165 | 109 | 66.2 | Plus |
BS08775.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:52 Download gff for
BS08775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-PA | 1..956 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:44 Download gff for
BS08775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-PA | 1..956 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:49:41 Download gff for
BS08775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RB | 401..1364 | 8..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:15 Download gff for
BS08775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RA | 472..1435 | 8..972 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:15 Download gff for
BS08775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3037784..3037961 | 51..228 | 100 | -> | Plus |
| 3L | 3038123..3038567 | 229..673 | 100 | -> | Plus |
| 3L | 3038729..3038905 | 674..850 | 100 | -> | Plus |
| 3L | 3038964..3039085 | 851..972 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:49:41 Download gff for
BS08775.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3037784..3037961 | 51..228 | 100 | -> | Plus |
| arm_3L | 3038123..3038567 | 229..673 | 100 | -> | Plus |
| arm_3L | 3038729..3038905 | 674..850 | 100 | -> | Plus |
| arm_3L | 3038964..3039085 | 851..972 | 97 | | Plus |
BS08775.complete Sequence
1640 bp (1640 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636263
> BS08775.complete
GAAGTTATCAGTCGACATGGGCGTTAAGAAGCATATCAGCGAGACTCCAT
TAAGCAAATCGAATTCGGTGGATTTATACAGGCCGCCAGCGTTGAGGAAC
AATAGCAATAACAACAACAGCAGCAGCGAGGAAGCAGCTGCAGTAAACGA
AGCTATAACAACACCATTAGCTGCAGGAACAGCAACCACTGCATCTACAA
GTCCTACCTCCAAAGAATCCCCAAACAGAGAGGCGGACGCCTCAGCAGCA
GCAGCGGCGGCGGCGACACGACGTGAACGCCGTCCCGATCGAGCGGTTTA
TGTGCCAAGGGCACGACGCAGTCAAACTACACCACCGACTACTACAACAA
CAACAACGGCGGCGGCAGCGACAGCGGTTGCAACAACATCACCACCAGCA
GCAGCAGCGGTGGTCGCAGCAACAATTACAACAGCGCCGGATTCCCCGCC
AGTTGCAGATACACAGCCGAGCAAAGCGGACGACGTCAACGGTCAGCCGC
CGTCCAAGTCGAAGAAAAGCAAATCGCATCGGGAGCGCAGAGAACGCGCA
AAGAAAACGACAACAGCTACAACGGCCGATAACGCCACTGTACTGGTTAT
ATCAGCATCTGAGAACGATACTCAATCCAACGAAGAACACCGACCGGCAA
AGCCAGCGGACTGTGATAAGGAGATCATGAGCGGCGCCCAGCGTACAAAG
CCAGGCAATGGCAACAAATCAGCCAGCAATGGCAAAAGCCAGGCATCGCC
TCCGCTGCGCATCGAGGATGTGGTGGCGGCCAGGAGCACCAATGGCGAGG
AGCCGGCCAAATGTGATAACGATGTGCGCGAGCTGCAGCGAGCCTCAAAG
GAAATCAATCGCAGCAATCGGCGCATCATGAAACAAACCTTCAACTCAGA
TGTGCTGGAGATTCCCGAGAAAATAGAGACATCGGCAACAAAGGCCATCC
CCACATCCCCGCAAGCATCAGCCACAGCGAAACCACCTGTAGACAGCACC
ACCGAAGACGATGACGAGGAGGACGAGGACGACTGGGAGAAGATGTTCGA
CGAGAGCGGCGACTGTCTGGATCCCAAGTTACTCCAAGAACTGACTGAAT
CCGTGGGCAAGTGCAAAATAGAGCTGCCCAAAATGGACTATACGGTCTTT
CACATTAAACAACAACTGCTCAACGAAGAGGAATTTCCGCACGTTCTGGA
GGTGTCCAATTTCCCAGTGGAGTTCAAAACTCCCGACCTGCTCATGCTTT
TCGCCCAGTACAGGGGCAGTGGTTTCGACATCAAGTGGGTAGACGATACC
CATGCCCTGGCTGTGTTCAGCAGTTCCCGCATTGCTGCTGAGGTGCTGAC
GATGGGGCATCCGTTTGTCAAGTTGAAGCCACTTGCGGAAGCCACTCTGG
AGTCACGACTGAAGGCAAAGAAGGCCGGCGCGGTGTCAATGCAGCCCTAT
CGCCAGCGTCCGGAAACCTGCACGGCCTTGGCCCGACGACTGGTATCGGG
TGCACTGGGAGTCAAGCTGCCCACGGCGCCGCAGGAACGGGAGAACGAGA
GGCGGGTACTACGTGAAGCCAAAGAACGCAAACTGCTAGCTGCCAAACAG
CGGGACGAAGTCTGGGAGAGCTAGAAGCTTTCTAGACCAT
BS08775.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-RE | 1989 | CG2162-PE | 382..1989 | 17..1624 | 8040 | 100 | Plus |
| CG2162-RA | 1608 | CG2162-PA | 1..1608 | 17..1624 | 8040 | 100 | Plus |
| CG2162-RF | 948 | CG2162-PF | 1..948 | 677..1624 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-RE | 2580 | CG2162-RE | 480..2088 | 17..1625 | 8045 | 100 | Plus |
| CG2162-RA | 2580 | CG2162-RA | 480..2088 | 17..1625 | 8045 | 100 | Plus |
| CG2162-RF | 1669 | CG2162-RF | 1..1177 | 449..1625 | 5885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3038121..3038567 | 227..673 | 2235 | 100 | Plus |
| 3L | 28110227 | 3L | 3038962..3039259 | 849..1146 | 1490 | 100 | Plus |
| 3L | 28110227 | 3L | 3039578..3039818 | 1334..1574 | 1205 | 100 | Plus |
| 3L | 28110227 | 3L | 3039325..3039515 | 1144..1334 | 955 | 100 | Plus |
| 3L | 28110227 | 3L | 3038727..3038906 | 672..851 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 3037784..3037961 | 51..228 | 890 | 100 | Plus |
| 3L | 28110227 | 3L | 3039925..3039977 | 1573..1625 | 265 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..7091 | 72..438 | 288 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2665 | 98..391 | 286 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2276..2666 | 53..431 | 274 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6862 | 325..464 | 243 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6955 | 345..578 | 224 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2243..2539 | 87..403 | 214 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2484 | 325..497 | 213 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2425..2535 | 325..435 | 213 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6685..6878 | 72..261 | 212 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..7089 | 98..409 | 212 | 53.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6689..6870 | 275..457 | 210 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2593..2898 | 130..435 | 208 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..7046 | 325..593 | 200 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6923 | 363..573 | 195 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2550 | 224..474 | 191 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6840..7056 | 325..537 | 191 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..7057 | 157..492 | 189 | 54.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2971 | 99..268 | 188 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2391 | 351..435 | 182 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2639 | 325..578 | 178 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6952 | 152..407 | 176 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6911 | 95..186 | 175 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2782..2894 | 92..209 | 173 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2421 | 325..408 | 168 | 66.7 | Plus |
| BS | 5142 | BS BS 5142bp | 2011..2108 | 338..435 | 166 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1148 | 331..408 | 156 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1585 | 323..424 | 154 | 68.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3236..3346 | 341..445 | 144 | 63.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11057..11126 | 359..424 | 134 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2898..3012 | 330..449 | 129 | 59.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3292..3344 | 325..377 | 121 | 69.8 | Plus |
| BS | 5142 | BS BS 5142bp | 2052..2116 | 343..407 | 118 | 64.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6033..6093 | 348..408 | 115 | 69.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1149 | 380..463 | 114 | 59.5 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 819..865 | 95..143 | 114 | 73.5 | Plus |
BS08775.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:18 Download gff for
BS08775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RA | 1..1608 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:32 Download gff for
BS08775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RB | 401..2017 | 8..1625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:17 Download gff for
BS08775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RB | 409..2016 | 17..1624 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:19 Download gff for
BS08775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RA | 470..2086 | 8..1625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:16 Download gff for
BS08775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RA | 480..2087 | 17..1624 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:16 Download gff for
BS08775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3039579..3039818 | 1335..1574 | 100 | -> | Plus |
| 3L | 3039927..3039976 | 1575..1624 | 100 | | Plus |
| 3L | 3036868..3036901 | 17..50 | 100 | -> | Plus |
| 3L | 3037784..3037961 | 51..228 | 100 | -> | Plus |
| 3L | 3038123..3038567 | 229..673 | 100 | -> | Plus |
| 3L | 3038729..3038905 | 674..850 | 100 | -> | Plus |
| 3L | 3038964..3039257 | 851..1144 | 100 | -> | Plus |
| 3L | 3039326..3039515 | 1145..1334 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:17 Download gff for
BS08775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3038729..3038905 | 674..850 | 100 | -> | Plus |
| arm_3L | 3036868..3036901 | 17..50 | 100 | -> | Plus |
| arm_3L | 3037784..3037961 | 51..228 | 100 | -> | Plus |
| arm_3L | 3038123..3038567 | 229..673 | 100 | -> | Plus |
| arm_3L | 3038964..3039257 | 851..1144 | 100 | -> | Plus |
| arm_3L | 3039326..3039515 | 1145..1334 | 100 | -> | Plus |
| arm_3L | 3039579..3039818 | 1335..1574 | 100 | -> | Plus |
| arm_3L | 3039927..3039976 | 1575..1624 | 100 | | Plus |
BS08775.pep Sequence
Translation from 16 to 1623
> BS08775.pep
MGVKKHISETPLSKSNSVDLYRPPALRNNSNNNNSSSEEAAAVNEAITTP
LAAGTATTASTSPTSKESPNREADASAAAAAAATRRERRPDRAVYVPRAR
RSQTTPPTTTTTTTAAAATAVATTSPPAAAAVVAATITTAPDSPPVADTQ
PSKADDVNGQPPSKSKKSKSHRERRERAKKTTTATTADNATVLVISASEN
DTQSNEEHRPAKPADCDKEIMSGAQRTKPGNGNKSASNGKSQASPPLRIE
DVVAARSTNGEEPAKCDNDVRELQRASKEINRSNRRIMKQTFNSDVLEIP
EKIETSATKAIPTSPQASATAKPPVDSTTEDDDEEDEDDWEKMFDESGDC
LDPKLLQELTESVGKCKIELPKMDYTVFHIKQQLLNEEEFPHVLEVSNFP
VEFKTPDLLMLFAQYRGSGFDIKWVDDTHALAVFSSSRIAAEVLTMGHPF
VKLKPLAEATLESRLKAKKAGAVSMQPYRQRPETCTALARRLVSGALGVK
LPTAPQERENERRVLREAKERKLLAAKQRDEVWES*
BS08775.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-PE | 662 | CG2162-PE | 128..662 | 1..535 | 2708 | 100 | Plus |
| CG2162-PA | 535 | CG2162-PA | 1..535 | 1..535 | 2708 | 100 | Plus |
| CG2162-PF | 315 | CG2162-PF | 1..315 | 221..535 | 1612 | 100 | Plus |
| mamo-PC | 799 | CG45477-PC | 148..457 | 33..339 | 164 | 23.9 | Plus |
| mamo-PD | 1087 | CG45477-PD | 148..457 | 33..339 | 164 | 23.9 | Plus |
