Clone BS08776 Report

Search the DGRC for BS08776

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptRluA-2-RA
Protein status:BS08776.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08776.3prime Sequence

920 bp (813 high quality bases) assembled on 2006-01-11

> BS08776.3prime
ATGGTCTAGAAAGCTTTTATACTTTATCGTAATCAATATTCGAATTACAC
GCCCATTCCGGCAATTCGGTTTCGTACTCCCAACCAACGCCCTTGTATTT
CCATGCATGCAAGTACATTATGAGATCCTTTGTGCCGGGGTCTCTGTAGT
TTATCTTGCATTCAGAACATTGCGGATCCGAAGTTGTCTTCTTGGAATCA
AAGGACCTGTCTGGTTCCTCATAGCACGTTTGGGTGGCAATCTGTGCAGT
AGCATCGTTACTTGGTTCAAGGTTTTTTGAAATCACAGGCTTTTCAGTTT
CACTATTAATAGGAGCCTGAACTACTGAGGGAGCCTCTACTACTGAAGTA
CTTGCTGCTACGTCTTTTATTTCCCCTGATACGATTTGATCTCCTTCCAA
GCCCAACCAGTTTTCTGCATTATGAATGCTAATTAGGTTACTGATCAACT
GTTCCTCGGTTATTCCACCGATATCTCCTCCTCTTCCTTTCAATGGACCG
AAAACTTCATGGTTGTACAAAGGATCATTTGAAATGGGATAGCCCAAGAA
TTGTAAATGCACTCGTATTTGGTGCATTCGTCCTGTTAGTGGTTTGCACA
AAACAATACTATCACTGCCCACCTCGCCGATTCTTTTAAATGTGGTCTTA
CAGTCCTTGCCCTTCGGTGAAACCTTACAAACACCTATTTTGTAGCTCAC
GACGTCGATTTTCTCATTGCATTCAACTATGCCATCTGGAAAGCGTCCTT
CAACGCGGCAAACGTATTCCTTTTGCACTTGGCGAGTTCGGATTTGCAGC
TCCAATTCGCGGGCTTTTTCAGCAGTCCGTCCAAACAAAAGTAGGCCAGA
TGTGAGACGATCCAATCTGTGAATGGTTCGCAGGTTCTTCAGATTGTGCT
CCTTGGCCAGGATGAAAACT

BS08776.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6187-PA 1644 RluA-2-RA 741..1644 920..17 4520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:04
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-2-RE 1988 CG6187-RE 1029..1933 920..16 4525 100 Minus
RluA-2-RD 1880 CG6187-RD 921..1825 920..16 4525 100 Minus
RluA-2-RA 2013 CG6187-RA 1054..1958 920..16 4525 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10482284..10482575 544..253 1460 100 Minus
2L 23513712 2L 10482043..10482234 734..543 960 100 Minus
2L 23513712 2L 10481798..10481983 920..735 930 100 Minus
2L 23513712 2L 10482625..10482787 253..91 815 100 Minus
2L 23513712 2L 10482843..10482920 93..16 390 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:15:02 has no hits.

BS08776.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:53 Download gff for BS08776.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6187-PA 741..1644 17..920 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:46 Download gff for BS08776.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6187-PA 741..1644 17..920 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:28:45 Download gff for BS08776.3prime
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 1054..1958 16..920 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:21 Download gff for BS08776.3prime
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 1054..1958 16..920 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:21 Download gff for BS08776.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10481798..10481983 735..920 100 -> Minus
2L 10482043..10482233 544..734 100 -> Minus
2L 10482285..10482574 254..543 100 -> Minus
2L 10482625..10482786 92..253 100 -> Minus
2L 10482845..10482920 16..91 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:28:45 Download gff for BS08776.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10482625..10482786 92..253 100 -> Minus
arm_2L 10482845..10482920 16..91 100   Minus
arm_2L 10482285..10482574 254..543 100 -> Minus
arm_2L 10481798..10481983 735..920 100 -> Minus
arm_2L 10482043..10482233 544..734 100 -> Minus

BS08776.5prime Sequence

894 bp (770 high quality bases) assembled on 2006-01-11

> BS08776.5prime
GAAGTTATCAGTCGACATGGAGAGTTCCAAACTCTTGAGAAATGCACAAA
CCCAGCATGGAGATGCCTCATCCGTGGACGTGGAAAACATATTCCTGCAC
CGCCATATGCTATACACAAATCCCACTTCGGATGGCAATCTCCATGATCG
GGAAGATTCCCCCGAATGCGTGTGGTGTCCAGACGACAAGGATGGTAGTC
CAGCTGAAAGCAAAGATCCACCGATATCCATATCAGAGGAAAAGTCTGAA
ACGCAATCAAAAGAAGTTTTGTCGGAAAAGCGAAAAGCTAGCAGCACAGA
TGACGAAGGGCATGTGAAAAAAGTAAAATTAGAGGCCAATAGTCTAAAAA
CGAAGCGTCCTGGATTCAGCGATGAAAGATACGACGAAACATCGTATTAT
TTTGAGAATGGTCTGCGGAAGGTGTATCCTTATTTTTTCACATTCACCAC
GTTCGCCAAAGGACGTTGGGTTGATGAGAAAATTCTGGATGTATTTGTCC
GCGAATTTCGAGCCGCACCGCCGGAGGAATATGAACGCAGCCTGGAAGCG
GGAAAATTGACTGTTAACTCTGAGAAAGTGCCCAAGGACTATAAAATCAA
GCACAATGATCTGCTGGCCAATGTGGTGCATAGACACGAAGTCCCTGTTA
CTTCACAGCCCATCAAGATTGTGTACATGGACAAGGATATTGTGGTTGTG
AATAAGCCGGCATCGATACCGGTACATCCTTGTGGAAGATATAGACACAA
CACGGTAGTTTTCATCCTGGCCAAGGAGCACAATCTGAAGAACCTGCGAA
CCATTCACAGATTGGATCGTCTCACATCTGGCCTACTTTTGTTTGGACGG
ACTGCTGAAAAAGCCCGCGAATTGGAGCTGCAAATCCGAACTCG

BS08776.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6187-PA 1644 RluA-2-RA 1..878 17..894 4390 100 Plus
CG31719-PA 2220 RluA-1-RA 1156..1245 689..778 150 86.6 Plus
CG31719-PB 2220 RluA-1-RB 1156..1245 689..778 150 86.6 Plus
CG31719-PC 2220 RluA-1-RC 1156..1245 689..778 150 86.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-2-RC 2001 CG6187-RC 314..1191 17..894 4390 100 Plus
RluA-2-RD 1880 CG6187-RD 181..1058 17..894 4390 100 Plus
RluA-2-RA 2013 CG6187-RA 314..1191 17..894 4390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10481347..10481570 410..633 1120 100 Plus
2L 23513712 2L 10477386..10477592 17..223 1035 100 Plus
2L 23513712 2L 10481097..10481286 223..412 950 100 Plus
2L 23513712 2L 10481762..10481935 721..894 870 100 Plus
2L 23513712 2L 10481619..10481712 631..724 470 100 Plus
2L 23513712 2L 10464997..10465099 819..717 230 81.6 Minus
2L 23513712 2L 10465286..10465378 724..632 210 81.7 Minus
Blast to na_te.dros performed on 2015-02-04 04:00:16 has no hits.

BS08776.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:54 Download gff for BS08776.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6187-PA 1..878 17..894 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:47 Download gff for BS08776.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6187-PA 1..878 17..894 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:45 Download gff for BS08776.5prime
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 307..1191 11..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:42 Download gff for BS08776.5prime
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 307..1191 11..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:42 Download gff for BS08776.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10477379..10477592 11..223 98 -> Plus
2L 10481098..10481284 224..410 100 -> Plus
2L 10481348..10481570 411..633 100 -> Plus
2L 10481622..10481709 634..721 100 -> Plus
2L 10481763..10481935 722..894 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:45 Download gff for BS08776.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10477379..10477592 11..223 98 -> Plus
arm_2L 10481098..10481284 224..410 100 -> Plus
arm_2L 10481348..10481570 411..633 100 -> Plus
arm_2L 10481622..10481709 634..721 100 -> Plus
arm_2L 10481763..10481935 722..894 100   Plus

BS08776.complete Sequence

1676 bp (1676 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636264

> BS08776.complete
GAAGTTATCAGTCGACATGGAGAGTTCCAAACTCTTGAGAAATGCACAAA
CCCAGCATGGAGATGCCTCATCCGTGGACGTGGAAAACATATTCCTGCAC
CGCCATATGCTATACACAAATCCCACTTCGGATGGCAATCTCCATGATCG
GGAAGATTCCCCCGAATGCGTGTGGTGTCCAGACGACAAGGATGGTAGTC
CAGCTGAAAGCAAAGATCCACCGATATCCATATCAGAGGAAAAGTCTGAA
ACGCAATCAAAAGAAGTTTTGTCGGAAAAGCGAAAAGCTAGCAGCACAGA
TGACGAAGGGCATGTGAAAAAAGTAAAATTAGAGGCCAATAGTCTAAAAA
CGAAGCGTCCTGGATTCAGCGATGAAAGATACGACGAAACATCGTATTAT
TTTGAGAATGGTCTGCGGAAGGTGTATCCTTATTTTTTCACATTCACCAC
GTTCGCCAAAGGACGTTGGGTTGATGAGAAAATTCTGGATGTATTTGTCC
GCGAATTTCGAGCCGCACCGCCGGAGGAATATGAACGCAGCCTGGAAGCG
GGAAAATTGACTGTTAACTCTGAGAAAGTGCCCAAGGACTATAAAATCAA
GCACAATGATCTGCTGGCCAATGTGGTGCATAGACACGAAGTCCCTGTTA
CTTCACAGCCCATCAAGATTGTGTACATGGACAAGGATATTGTGGTTGTG
AATAAGCCGGCATCGATACCGGTACATCCTTGTGGAAGATATAGACACAA
CACGGTAGTTTTCATCCTGGCCAAGGAGCACAATCTGAAGAACCTGCGAA
CCATTCACAGATTGGATCGTCTCACATCTGGCCTACTTTTGTTTGGACGG
ACTGCTGAAAAAGCCCGCGAATTGGAGCTGCAAATCCGAACTCGCCAAGT
GCAAAAGGAATACGTTTGCCGCGTTGAAGGACGCTTTCCAGATGGCATAG
TTGAATGCAATGAGAAAATCGACGTCGTGAGCTACAAAATAGGTGTTTGT
AAGGTTTCACCGAAGGGCAAGGACTGTAAGACCACATTTAAAAGAATCGG
CGAGGTGGGCAGTGATAGTATTGTTTTGTGCAAACCACTAACAGGACGAA
TGCACCAAATACGAGTGCATTTACAATTCTTGGGCTATCCCATTTCAAAT
GATCCTTTGTACAACCATGAAGTTTTCGGTCCATTGAAAGGAAGAGGAGG
AGATATCGGTGGAATAACCGAGGAACAGTTGATCAGTAACCTAATTAGCA
TTCATAATGCAGAAAACTGGTTGGGCTTGGAAGGAGATCAAATCGTATCA
GGGGAAATAAAAGACGTAGCAGCAAGTACTTCAGTAGTAGAGGCTCCCTC
AGTAGTTCAGGCTCCTATTAATAGTGAAACTGAAAAGCCTGTGATTTCAA
AAAACCTTGAACCAAGTAACGATGCTACTGCACAGATTGCCACCCAAACG
TGCTATGAGGAACCAGACAGGTCCTTTGATTCCAAGAAGACAACTTCGGA
TCCGCAATGTTCTGAATGCAAGATAAACTACAGAGACCCCGGCACAAAGG
ATCTCATAATGTACTTGCATGCATGGAAATACAAGGGCGTTGGTTGGGAG
TACGAAACCGAATTGCCGGAATGGGCGTGTAATTCGAATATTGATTACGA
TAAAGTATAAAAGCTTTCTAGACCAT

BS08776.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-2-RD 1644 CG6187-PD 1..1644 17..1660 8220 100 Plus
RluA-2-RA 1644 CG6187-PA 1..1644 17..1660 8220 100 Plus
RluA-2-RC 1632 CG6187-PC 1..1632 17..1660 8005 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-2-RD 1880 CG6187-RD 181..1825 17..1661 8225 100 Plus
RluA-2-RA 2013 CG6187-RA 314..1958 17..1661 8225 100 Plus
RluA-2-RC 2001 CG6187-RC 314..1946 17..1661 8010 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10482284..10482575 1133..1424 1460 100 Plus
2L 23513712 2L 10481347..10481570 410..633 1120 100 Plus
2L 23513712 2L 10481762..10481983 721..942 1110 100 Plus
2L 23513712 2L 10477386..10477592 17..223 1035 100 Plus
2L 23513712 2L 10482043..10482234 943..1134 960 100 Plus
2L 23513712 2L 10481097..10481286 223..412 950 100 Plus
2L 23513712 2L 10482625..10482787 1424..1586 815 100 Plus
2L 23513712 2L 10481619..10481712 631..724 470 100 Plus
2L 23513712 2L 10482843..10482920 1584..1661 390 100 Plus
2L 23513712 2L 10464997..10465099 819..717 230 81.6 Minus
2L 23513712 2L 10465286..10465378 724..632 210 81.7 Minus
Blast to na_te.dros performed on 2014-11-28 00:33:15 has no hits.

BS08776.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:21 Download gff for BS08776.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 1..1644 17..1660 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:36 Download gff for BS08776.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 266..1917 11..1661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:50 Download gff for BS08776.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 314..1955 17..1658 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:21 Download gff for BS08776.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 266..1917 11..1661 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:54 Download gff for BS08776.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-2-RA 314..1955 17..1658 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:54 Download gff for BS08776.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10482625..10482786 1424..1585 100 -> Plus
2L 10482845..10482917 1586..1658 100   Plus
2L 10482043..10482233 943..1133 100 -> Plus
2L 10482285..10482574 1134..1423 100 -> Plus
2L 10477386..10477592 17..223 100 -> Plus
2L 10481098..10481284 224..410 100 -> Plus
2L 10481348..10481570 411..633 100 -> Plus
2L 10481622..10481709 634..721 100 -> Plus
2L 10481763..10481983 722..942 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:50 Download gff for BS08776.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10482625..10482786 1424..1585 100 -> Plus
arm_2L 10482845..10482917 1586..1658 100   Plus
arm_2L 10482043..10482233 943..1133 100 -> Plus
arm_2L 10482285..10482574 1134..1423 100 -> Plus
arm_2L 10477386..10477592 17..223 100 -> Plus
arm_2L 10481098..10481284 224..410 100 -> Plus
arm_2L 10481348..10481570 411..633 100 -> Plus
arm_2L 10481622..10481709 634..721 100 -> Plus
arm_2L 10481763..10481983 722..942 100 -> Plus

BS08776.pep Sequence

Translation from 16 to 1659

> BS08776.pep
MESSKLLRNAQTQHGDASSVDVENIFLHRHMLYTNPTSDGNLHDREDSPE
CVWCPDDKDGSPAESKDPPISISEEKSETQSKEVLSEKRKASSTDDEGHV
KKVKLEANSLKTKRPGFSDERYDETSYYFENGLRKVYPYFFTFTTFAKGR
WVDEKILDVFVREFRAAPPEEYERSLEAGKLTVNSEKVPKDYKIKHNDLL
ANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPASIPVHPCGRYRHNTVVFI
LAKEHNLKNLRTIHRLDRLTSGLLLFGRTAEKARELELQIRTRQVQKEYV
CRVEGRFPDGIVECNEKIDVVSYKIGVCKVSPKGKDCKTTFKRIGEVGSD
SIVLCKPLTGRMHQIRVHLQFLGYPISNDPLYNHEVFGPLKGRGGDIGGI
TEEQLISNLISIHNAENWLGLEGDQIVSGEIKDVAASTSVVEAPSVVQAP
INSETEKPVISKNLEPSNDATAQIATQTCYEEPDRSFDSKKTTSDPQCSE
CKINYRDPGTKDLIMYLHAWKYKGVGWEYETELPEWACNSNIDYDKV*

BS08776.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-2-PD 547 CG6187-PD 1..547 1..547 2898 100 Plus
RluA-2-PA 547 CG6187-PA 1..547 1..547 2898 100 Plus
RluA-2-PC 543 CG6187-PC 1..543 1..547 2865 99.3 Plus
RluA-1-PC 739 CG31719-PC 248..731 87..539 1626 66.1 Plus
RluA-1-PB 739 CG31719-PB 248..731 87..539 1626 66.1 Plus