Clone Sequence Records
BS08776.3prime Sequence
920 bp (813 high quality bases) assembled on 2006-01-11
> BS08776.3prime
ATGGTCTAGAAAGCTTTTATACTTTATCGTAATCAATATTCGAATTACAC
GCCCATTCCGGCAATTCGGTTTCGTACTCCCAACCAACGCCCTTGTATTT
CCATGCATGCAAGTACATTATGAGATCCTTTGTGCCGGGGTCTCTGTAGT
TTATCTTGCATTCAGAACATTGCGGATCCGAAGTTGTCTTCTTGGAATCA
AAGGACCTGTCTGGTTCCTCATAGCACGTTTGGGTGGCAATCTGTGCAGT
AGCATCGTTACTTGGTTCAAGGTTTTTTGAAATCACAGGCTTTTCAGTTT
CACTATTAATAGGAGCCTGAACTACTGAGGGAGCCTCTACTACTGAAGTA
CTTGCTGCTACGTCTTTTATTTCCCCTGATACGATTTGATCTCCTTCCAA
GCCCAACCAGTTTTCTGCATTATGAATGCTAATTAGGTTACTGATCAACT
GTTCCTCGGTTATTCCACCGATATCTCCTCCTCTTCCTTTCAATGGACCG
AAAACTTCATGGTTGTACAAAGGATCATTTGAAATGGGATAGCCCAAGAA
TTGTAAATGCACTCGTATTTGGTGCATTCGTCCTGTTAGTGGTTTGCACA
AAACAATACTATCACTGCCCACCTCGCCGATTCTTTTAAATGTGGTCTTA
CAGTCCTTGCCCTTCGGTGAAACCTTACAAACACCTATTTTGTAGCTCAC
GACGTCGATTTTCTCATTGCATTCAACTATGCCATCTGGAAAGCGTCCTT
CAACGCGGCAAACGTATTCCTTTTGCACTTGGCGAGTTCGGATTTGCAGC
TCCAATTCGCGGGCTTTTTCAGCAGTCCGTCCAAACAAAAGTAGGCCAGA
TGTGAGACGATCCAATCTGTGAATGGTTCGCAGGTTCTTCAGATTGTGCT
CCTTGGCCAGGATGAAAACT
BS08776.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6187-PA | 1644 | RluA-2-RA | 741..1644 | 920..17 | 4520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:15:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RluA-2-RE | 1988 | CG6187-RE | 1029..1933 | 920..16 | 4525 | 100 | Minus |
RluA-2-RD | 1880 | CG6187-RD | 921..1825 | 920..16 | 4525 | 100 | Minus |
RluA-2-RA | 2013 | CG6187-RA | 1054..1958 | 920..16 | 4525 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10482284..10482575 | 544..253 | 1460 | 100 | Minus |
2L | 23513712 | 2L | 10482043..10482234 | 734..543 | 960 | 100 | Minus |
2L | 23513712 | 2L | 10481798..10481983 | 920..735 | 930 | 100 | Minus |
2L | 23513712 | 2L | 10482625..10482787 | 253..91 | 815 | 100 | Minus |
2L | 23513712 | 2L | 10482843..10482920 | 93..16 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:15:02 has no hits.
BS08776.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:53 Download gff for
BS08776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6187-PA | 741..1644 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:46 Download gff for
BS08776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6187-PA | 741..1644 | 17..920 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:28:45 Download gff for
BS08776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 1054..1958 | 16..920 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:21 Download gff for
BS08776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 1054..1958 | 16..920 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:21 Download gff for
BS08776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10481798..10481983 | 735..920 | 100 | -> | Minus |
2L | 10482043..10482233 | 544..734 | 100 | -> | Minus |
2L | 10482285..10482574 | 254..543 | 100 | -> | Minus |
2L | 10482625..10482786 | 92..253 | 100 | -> | Minus |
2L | 10482845..10482920 | 16..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:28:45 Download gff for
BS08776.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10482625..10482786 | 92..253 | 100 | -> | Minus |
arm_2L | 10482845..10482920 | 16..91 | 100 | | Minus |
arm_2L | 10482285..10482574 | 254..543 | 100 | -> | Minus |
arm_2L | 10481798..10481983 | 735..920 | 100 | -> | Minus |
arm_2L | 10482043..10482233 | 544..734 | 100 | -> | Minus |
BS08776.5prime Sequence
894 bp (770 high quality bases) assembled on 2006-01-11
> BS08776.5prime
GAAGTTATCAGTCGACATGGAGAGTTCCAAACTCTTGAGAAATGCACAAA
CCCAGCATGGAGATGCCTCATCCGTGGACGTGGAAAACATATTCCTGCAC
CGCCATATGCTATACACAAATCCCACTTCGGATGGCAATCTCCATGATCG
GGAAGATTCCCCCGAATGCGTGTGGTGTCCAGACGACAAGGATGGTAGTC
CAGCTGAAAGCAAAGATCCACCGATATCCATATCAGAGGAAAAGTCTGAA
ACGCAATCAAAAGAAGTTTTGTCGGAAAAGCGAAAAGCTAGCAGCACAGA
TGACGAAGGGCATGTGAAAAAAGTAAAATTAGAGGCCAATAGTCTAAAAA
CGAAGCGTCCTGGATTCAGCGATGAAAGATACGACGAAACATCGTATTAT
TTTGAGAATGGTCTGCGGAAGGTGTATCCTTATTTTTTCACATTCACCAC
GTTCGCCAAAGGACGTTGGGTTGATGAGAAAATTCTGGATGTATTTGTCC
GCGAATTTCGAGCCGCACCGCCGGAGGAATATGAACGCAGCCTGGAAGCG
GGAAAATTGACTGTTAACTCTGAGAAAGTGCCCAAGGACTATAAAATCAA
GCACAATGATCTGCTGGCCAATGTGGTGCATAGACACGAAGTCCCTGTTA
CTTCACAGCCCATCAAGATTGTGTACATGGACAAGGATATTGTGGTTGTG
AATAAGCCGGCATCGATACCGGTACATCCTTGTGGAAGATATAGACACAA
CACGGTAGTTTTCATCCTGGCCAAGGAGCACAATCTGAAGAACCTGCGAA
CCATTCACAGATTGGATCGTCTCACATCTGGCCTACTTTTGTTTGGACGG
ACTGCTGAAAAAGCCCGCGAATTGGAGCTGCAAATCCGAACTCG
BS08776.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6187-PA | 1644 | RluA-2-RA | 1..878 | 17..894 | 4390 | 100 | Plus |
CG31719-PA | 2220 | RluA-1-RA | 1156..1245 | 689..778 | 150 | 86.6 | Plus |
CG31719-PB | 2220 | RluA-1-RB | 1156..1245 | 689..778 | 150 | 86.6 | Plus |
CG31719-PC | 2220 | RluA-1-RC | 1156..1245 | 689..778 | 150 | 86.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RluA-2-RC | 2001 | CG6187-RC | 314..1191 | 17..894 | 4390 | 100 | Plus |
RluA-2-RD | 1880 | CG6187-RD | 181..1058 | 17..894 | 4390 | 100 | Plus |
RluA-2-RA | 2013 | CG6187-RA | 314..1191 | 17..894 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:00:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10481347..10481570 | 410..633 | 1120 | 100 | Plus |
2L | 23513712 | 2L | 10477386..10477592 | 17..223 | 1035 | 100 | Plus |
2L | 23513712 | 2L | 10481097..10481286 | 223..412 | 950 | 100 | Plus |
2L | 23513712 | 2L | 10481762..10481935 | 721..894 | 870 | 100 | Plus |
2L | 23513712 | 2L | 10481619..10481712 | 631..724 | 470 | 100 | Plus |
2L | 23513712 | 2L | 10464997..10465099 | 819..717 | 230 | 81.6 | Minus |
2L | 23513712 | 2L | 10465286..10465378 | 724..632 | 210 | 81.7 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:00:16 has no hits.
BS08776.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:54 Download gff for
BS08776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6187-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:47 Download gff for
BS08776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6187-PA | 1..878 | 17..894 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:45 Download gff for
BS08776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 307..1191 | 11..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:42 Download gff for
BS08776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 307..1191 | 11..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:42 Download gff for
BS08776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10477379..10477592 | 11..223 | 98 | -> | Plus |
2L | 10481098..10481284 | 224..410 | 100 | -> | Plus |
2L | 10481348..10481570 | 411..633 | 100 | -> | Plus |
2L | 10481622..10481709 | 634..721 | 100 | -> | Plus |
2L | 10481763..10481935 | 722..894 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:45 Download gff for
BS08776.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10477379..10477592 | 11..223 | 98 | -> | Plus |
arm_2L | 10481098..10481284 | 224..410 | 100 | -> | Plus |
arm_2L | 10481348..10481570 | 411..633 | 100 | -> | Plus |
arm_2L | 10481622..10481709 | 634..721 | 100 | -> | Plus |
arm_2L | 10481763..10481935 | 722..894 | 100 | | Plus |
BS08776.complete Sequence
1676 bp (1676 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636264
> BS08776.complete
GAAGTTATCAGTCGACATGGAGAGTTCCAAACTCTTGAGAAATGCACAAA
CCCAGCATGGAGATGCCTCATCCGTGGACGTGGAAAACATATTCCTGCAC
CGCCATATGCTATACACAAATCCCACTTCGGATGGCAATCTCCATGATCG
GGAAGATTCCCCCGAATGCGTGTGGTGTCCAGACGACAAGGATGGTAGTC
CAGCTGAAAGCAAAGATCCACCGATATCCATATCAGAGGAAAAGTCTGAA
ACGCAATCAAAAGAAGTTTTGTCGGAAAAGCGAAAAGCTAGCAGCACAGA
TGACGAAGGGCATGTGAAAAAAGTAAAATTAGAGGCCAATAGTCTAAAAA
CGAAGCGTCCTGGATTCAGCGATGAAAGATACGACGAAACATCGTATTAT
TTTGAGAATGGTCTGCGGAAGGTGTATCCTTATTTTTTCACATTCACCAC
GTTCGCCAAAGGACGTTGGGTTGATGAGAAAATTCTGGATGTATTTGTCC
GCGAATTTCGAGCCGCACCGCCGGAGGAATATGAACGCAGCCTGGAAGCG
GGAAAATTGACTGTTAACTCTGAGAAAGTGCCCAAGGACTATAAAATCAA
GCACAATGATCTGCTGGCCAATGTGGTGCATAGACACGAAGTCCCTGTTA
CTTCACAGCCCATCAAGATTGTGTACATGGACAAGGATATTGTGGTTGTG
AATAAGCCGGCATCGATACCGGTACATCCTTGTGGAAGATATAGACACAA
CACGGTAGTTTTCATCCTGGCCAAGGAGCACAATCTGAAGAACCTGCGAA
CCATTCACAGATTGGATCGTCTCACATCTGGCCTACTTTTGTTTGGACGG
ACTGCTGAAAAAGCCCGCGAATTGGAGCTGCAAATCCGAACTCGCCAAGT
GCAAAAGGAATACGTTTGCCGCGTTGAAGGACGCTTTCCAGATGGCATAG
TTGAATGCAATGAGAAAATCGACGTCGTGAGCTACAAAATAGGTGTTTGT
AAGGTTTCACCGAAGGGCAAGGACTGTAAGACCACATTTAAAAGAATCGG
CGAGGTGGGCAGTGATAGTATTGTTTTGTGCAAACCACTAACAGGACGAA
TGCACCAAATACGAGTGCATTTACAATTCTTGGGCTATCCCATTTCAAAT
GATCCTTTGTACAACCATGAAGTTTTCGGTCCATTGAAAGGAAGAGGAGG
AGATATCGGTGGAATAACCGAGGAACAGTTGATCAGTAACCTAATTAGCA
TTCATAATGCAGAAAACTGGTTGGGCTTGGAAGGAGATCAAATCGTATCA
GGGGAAATAAAAGACGTAGCAGCAAGTACTTCAGTAGTAGAGGCTCCCTC
AGTAGTTCAGGCTCCTATTAATAGTGAAACTGAAAAGCCTGTGATTTCAA
AAAACCTTGAACCAAGTAACGATGCTACTGCACAGATTGCCACCCAAACG
TGCTATGAGGAACCAGACAGGTCCTTTGATTCCAAGAAGACAACTTCGGA
TCCGCAATGTTCTGAATGCAAGATAAACTACAGAGACCCCGGCACAAAGG
ATCTCATAATGTACTTGCATGCATGGAAATACAAGGGCGTTGGTTGGGAG
TACGAAACCGAATTGCCGGAATGGGCGTGTAATTCGAATATTGATTACGA
TAAAGTATAAAAGCTTTCTAGACCAT
BS08776.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RluA-2-RD | 1644 | CG6187-PD | 1..1644 | 17..1660 | 8220 | 100 | Plus |
RluA-2-RA | 1644 | CG6187-PA | 1..1644 | 17..1660 | 8220 | 100 | Plus |
RluA-2-RC | 1632 | CG6187-PC | 1..1632 | 17..1660 | 8005 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RluA-2-RD | 1880 | CG6187-RD | 181..1825 | 17..1661 | 8225 | 100 | Plus |
RluA-2-RA | 2013 | CG6187-RA | 314..1958 | 17..1661 | 8225 | 100 | Plus |
RluA-2-RC | 2001 | CG6187-RC | 314..1946 | 17..1661 | 8010 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10482284..10482575 | 1133..1424 | 1460 | 100 | Plus |
2L | 23513712 | 2L | 10481347..10481570 | 410..633 | 1120 | 100 | Plus |
2L | 23513712 | 2L | 10481762..10481983 | 721..942 | 1110 | 100 | Plus |
2L | 23513712 | 2L | 10477386..10477592 | 17..223 | 1035 | 100 | Plus |
2L | 23513712 | 2L | 10482043..10482234 | 943..1134 | 960 | 100 | Plus |
2L | 23513712 | 2L | 10481097..10481286 | 223..412 | 950 | 100 | Plus |
2L | 23513712 | 2L | 10482625..10482787 | 1424..1586 | 815 | 100 | Plus |
2L | 23513712 | 2L | 10481619..10481712 | 631..724 | 470 | 100 | Plus |
2L | 23513712 | 2L | 10482843..10482920 | 1584..1661 | 390 | 100 | Plus |
2L | 23513712 | 2L | 10464997..10465099 | 819..717 | 230 | 81.6 | Minus |
2L | 23513712 | 2L | 10465286..10465378 | 724..632 | 210 | 81.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:33:15 has no hits.
BS08776.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:21 Download gff for
BS08776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 1..1644 | 17..1660 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:36 Download gff for
BS08776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 266..1917 | 11..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:50 Download gff for
BS08776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 314..1955 | 17..1658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:21 Download gff for
BS08776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 266..1917 | 11..1661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:54 Download gff for
BS08776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-2-RA | 314..1955 | 17..1658 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:54 Download gff for
BS08776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10482625..10482786 | 1424..1585 | 100 | -> | Plus |
2L | 10482845..10482917 | 1586..1658 | 100 | | Plus |
2L | 10482043..10482233 | 943..1133 | 100 | -> | Plus |
2L | 10482285..10482574 | 1134..1423 | 100 | -> | Plus |
2L | 10477386..10477592 | 17..223 | 100 | -> | Plus |
2L | 10481098..10481284 | 224..410 | 100 | -> | Plus |
2L | 10481348..10481570 | 411..633 | 100 | -> | Plus |
2L | 10481622..10481709 | 634..721 | 100 | -> | Plus |
2L | 10481763..10481983 | 722..942 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:50 Download gff for
BS08776.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10482625..10482786 | 1424..1585 | 100 | -> | Plus |
arm_2L | 10482845..10482917 | 1586..1658 | 100 | | Plus |
arm_2L | 10482043..10482233 | 943..1133 | 100 | -> | Plus |
arm_2L | 10482285..10482574 | 1134..1423 | 100 | -> | Plus |
arm_2L | 10477386..10477592 | 17..223 | 100 | -> | Plus |
arm_2L | 10481098..10481284 | 224..410 | 100 | -> | Plus |
arm_2L | 10481348..10481570 | 411..633 | 100 | -> | Plus |
arm_2L | 10481622..10481709 | 634..721 | 100 | -> | Plus |
arm_2L | 10481763..10481983 | 722..942 | 100 | -> | Plus |
BS08776.pep Sequence
Translation from 16 to 1659
> BS08776.pep
MESSKLLRNAQTQHGDASSVDVENIFLHRHMLYTNPTSDGNLHDREDSPE
CVWCPDDKDGSPAESKDPPISISEEKSETQSKEVLSEKRKASSTDDEGHV
KKVKLEANSLKTKRPGFSDERYDETSYYFENGLRKVYPYFFTFTTFAKGR
WVDEKILDVFVREFRAAPPEEYERSLEAGKLTVNSEKVPKDYKIKHNDLL
ANVVHRHEVPVTSQPIKIVYMDKDIVVVNKPASIPVHPCGRYRHNTVVFI
LAKEHNLKNLRTIHRLDRLTSGLLLFGRTAEKARELELQIRTRQVQKEYV
CRVEGRFPDGIVECNEKIDVVSYKIGVCKVSPKGKDCKTTFKRIGEVGSD
SIVLCKPLTGRMHQIRVHLQFLGYPISNDPLYNHEVFGPLKGRGGDIGGI
TEEQLISNLISIHNAENWLGLEGDQIVSGEIKDVAASTSVVEAPSVVQAP
INSETEKPVISKNLEPSNDATAQIATQTCYEEPDRSFDSKKTTSDPQCSE
CKINYRDPGTKDLIMYLHAWKYKGVGWEYETELPEWACNSNIDYDKV*
BS08776.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RluA-2-PD | 547 | CG6187-PD | 1..547 | 1..547 | 2898 | 100 | Plus |
RluA-2-PA | 547 | CG6187-PA | 1..547 | 1..547 | 2898 | 100 | Plus |
RluA-2-PC | 543 | CG6187-PC | 1..543 | 1..547 | 2865 | 99.3 | Plus |
RluA-1-PC | 739 | CG31719-PC | 248..731 | 87..539 | 1626 | 66.1 | Plus |
RluA-1-PB | 739 | CG31719-PB | 248..731 | 87..539 | 1626 | 66.1 | Plus |