Clone Sequence Records
BS08779.5prime Sequence
618 bp (617 high quality bases) assembled on 2006-01-11
> BS08779.5prime
GAAGTTATCAGTCGACATGACTGATCCTAGCAAGCTCGCCGTCGCCGTAG
TCTGTTCCTCGAACATGAATCGCTCAATGGAGGCGCACAACTTTCTGGCC
AAGAAGGGTTTCAATGTGCGCTCCTACGGCACCGGCGAGCGCGTCAAGCT
ACCGGGCATGGCGTTCGACAAGCCGAATGTTTACGAGTTTGGCACCAAAT
ACGAGGACATCTACCGCGACCTGGAGTCCAAGGACAAGGAGTTCTACACA
CAGAACGGCCTGCTACACATGCTCGACCGCAATCGTCGCATAAAGAAGTG
CCCGGAACGGTTTCAGGACACCAAAGAGCAGTTCGACATCATCGTCACTG
TGGAAGAGCGCGTCTACGACCTGGTGGTGATGCACATGGAGTCCATGGAA
TCCGTGGACAACCGACCCGTGCACGTTCTCAACGTGGATGTGGTGGACAA
CGCTGAAGATGCGCTAATGGGCGCCTTTGTCATCACAGACATGATAAACA
TGATGGCCAAGTCCACGGACCTGGACAACGACATCGACGAATTGATCCAG
GAGTTCGAGGAGCGCCGCAAGCGGGTCATCCTGCACTCGGTGCTCTTCTA
CTGAAAGCTTTCTAGACC
BS08779.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14216-PA | 588 | CG14216-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssu72-RC | 1368 | CG14216-RC | 83..673 | 14..604 | 2955 | 100 | Plus |
Ssu72-RA | 2186 | CG14216-RA | 83..673 | 14..604 | 2955 | 100 | Plus |
Ssu72-RB | 2183 | CG14216-RB | 83..670 | 14..604 | 2900 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19664935..19665193 | 244..502 | 1295 | 100 | Plus |
X | 23542271 | X | 19664643..19664872 | 14..243 | 1150 | 100 | Plus |
X | 23542271 | X | 19665251..19665353 | 502..604 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:37:09 has no hits.
BS08779.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:00 Download gff for
BS08779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14216-PA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:56 Download gff for
BS08779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14216-PA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:39 Download gff for
BS08779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssu72-RA | 80..673 | 10..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:09:39 Download gff for
BS08779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssu72-RA | 80..673 | 10..604 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:09:39 Download gff for
BS08779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19664640..19664872 | 10..243 | 99 | -> | Plus |
X | 19664935..19665193 | 244..502 | 100 | -> | Plus |
X | 19665252..19665353 | 503..604 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:39 Download gff for
BS08779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19559285..19559386 | 503..604 | 100 | | Plus |
arm_X | 19558673..19558905 | 10..243 | 99 | -> | Plus |
arm_X | 19558968..19559226 | 244..502 | 100 | -> | Plus |
BS08779.3prime Sequence
618 bp (617 high quality bases) assembled on 2006-01-11
> BS08779.3prime
ATGGTCTAGAAAGCTTTCAGTAGAAGAGCACCGAGTGCAGGATGACCCGC
TTGCGGCGCTCCTCGAACTCCTGGATCAATTCGTCGATGTCGTTGTCCAG
GTCCGTGGACTTGGCCATCATGTTTATCATGTCTGTGATGACAAAGGCGC
CCATTAGCGCATCTTCAGCGTTGTCCACCACATCCACGTTGAGAACGTGC
ACGGGTCGGTTGTCCACGGATTCCATGGACTCCATGTGCATCACCACCAG
GTCGTAGACGCGCTCTTCCACAGTGACGATGATGTCGAACTGCTCTTTGG
TGTCCTGAAACCGTTCCGGGCACTTCTTTATGCGACGATTGCGGTCGAGC
ATGTGTAGCAGGCCGTTCTGTGTGTAGAACTCCTTGTCCTTGGACTCCAG
GTCGCGGTAGATGTCCTCGTATTTGGTGCCAAACTCGTAAACATTCGGCT
TGTCGAACGCCATGCCCGGTAGCTTGACGCGCTCGCCGGTGCCGTAGGAG
CGCACATTGAAACCCTTCTTGGCCAGAAAGTTGTGCGCCTCCATTGAGCG
ATTCATGTTCGAGGAACAGACTACGGCGACGGCGAGCTTGCTAGGATCAG
TCATGTCGACTGATAACT
BS08779.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14216-PA | 588 | CG14216-RA | 1..588 | 604..17 | 2940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:52:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssu72-RC | 1368 | CG14216-RC | 83..673 | 607..17 | 2955 | 100 | Minus |
Ssu72-RA | 2186 | CG14216-RA | 83..673 | 607..17 | 2955 | 100 | Minus |
Ssu72-RB | 2183 | CG14216-RB | 83..670 | 607..17 | 2900 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:52:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19664935..19665193 | 377..119 | 1295 | 100 | Minus |
X | 23542271 | X | 19664643..19664872 | 607..378 | 1150 | 100 | Minus |
X | 23542271 | X | 19665251..19665353 | 119..17 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:52:41 has no hits.
BS08779.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:59 Download gff for
BS08779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14216-PA | 1..588 | 17..604 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:54 Download gff for
BS08779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14216-PA | 1..588 | 17..604 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:27:04 Download gff for
BS08779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssu72-RA | 80..673 | 17..611 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:56 Download gff for
BS08779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssu72-RA | 80..673 | 17..611 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:56 Download gff for
BS08779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19664935..19665193 | 119..377 | 100 | -> | Minus |
X | 19665252..19665353 | 17..118 | 100 | | Minus |
X | 19664640..19664872 | 378..611 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:27:04 Download gff for
BS08779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19558673..19558905 | 378..611 | 99 | -> | Minus |
arm_X | 19558968..19559226 | 119..377 | 100 | -> | Minus |
arm_X | 19559285..19559386 | 17..118 | 100 | | Minus |
BS08779.complete Sequence
620 bp (620 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636265
> BS08779.complete
GAAGTTATCAGTCGACATGACTGATCCTAGCAAGCTCGCCGTCGCCGTAG
TCTGTTCCTCGAACATGAATCGCTCAATGGAGGCGCACAACTTTCTGGCC
AAGAAGGGTTTCAATGTGCGCTCCTACGGCACCGGCGAGCGCGTCAAGCT
ACCGGGCATGGCGTTCGACAAGCCGAATGTTTACGAGTTTGGCACCAAAT
ACGAGGACATCTACCGCGACCTGGAGTCCAAGGACAAGGAGTTCTACACA
CAGAACGGCCTGCTACACATGCTCGACCGCAATCGTCGCATAAAGAAGTG
CCCGGAACGGTTTCAGGACACCAAAGAGCAGTTCGACATCATCGTCACTG
TGGAAGAGCGCGTCTACGACCTGGTGGTGATGCACATGGAGTCCATGGAA
TCCGTGGACAACCGACCCGTGCACGTTCTCAACGTGGATGTGGTGGACAA
CGCTGAAGATGCGCTAATGGGCGCCTTTGTCATCACAGACATGATAAACA
TGATGGCCAAGTCCACGGACCTGGACAACGACATCGACGAATTGATCCAG
GAGTTCGAGGAGCGCCGCAAGCGGGTCATCCTGCACTCGGTGCTCTTCTA
CTGAAAGCTTTCTAGACCAT
BS08779.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssu72-RC | 588 | CG14216-PC | 1..588 | 17..604 | 2940 | 100 | Plus |
Ssu72-RA | 588 | CG14216-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Ssu72-RB | 585 | CG14216-PB | 1..585 | 17..604 | 2860 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssu72-RC | 1368 | CG14216-RC | 83..673 | 14..604 | 2955 | 100 | Plus |
Ssu72-RA | 2186 | CG14216-RA | 83..673 | 14..604 | 2955 | 100 | Plus |
Ssu72-RB | 2183 | CG14216-RB | 83..670 | 14..604 | 2875 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19664935..19665193 | 244..502 | 1295 | 100 | Plus |
X | 23542271 | X | 19664643..19664872 | 14..243 | 1150 | 100 | Plus |
X | 23542271 | X | 19665251..19665353 | 502..604 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:18:57 has no hits.
BS08779.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:22 Download gff for
BS08779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14216-RA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:06 Download gff for
BS08779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14216-RA | 74..667 | 10..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:14 Download gff for
BS08779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssu72-RA | 86..672 | 17..603 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:22 Download gff for
BS08779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14216-RA | 74..667 | 10..604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:48 Download gff for
BS08779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ssu72-RA | 86..672 | 17..603 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:48 Download gff for
BS08779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19664646..19664872 | 17..243 | 100 | -> | Plus |
X | 19664935..19665193 | 244..502 | 100 | -> | Plus |
X | 19665252..19665352 | 503..603 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:14 Download gff for
BS08779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19558679..19558905 | 17..243 | 100 | -> | Plus |
arm_X | 19558968..19559226 | 244..502 | 100 | -> | Plus |
arm_X | 19559285..19559385 | 503..603 | 100 | | Plus |
BS08779.pep Sequence
Translation from 16 to 603
> BS08779.pep
MTDPSKLAVAVVCSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAF
DKPNVYEFGTKYEDIYRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQ
DTKEQFDIIVTVEERVYDLVVMHMESMESVDNRPVHVLNVDVVDNAEDAL
MGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLFY*
BS08779.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ssu72-PC | 195 | CG14216-PC | 1..195 | 1..195 | 1007 | 100 | Plus |
Ssu72-PA | 195 | CG14216-PA | 1..195 | 1..195 | 1007 | 100 | Plus |
Ssu72-PB | 194 | CG14216-PB | 1..194 | 1..195 | 986 | 99 | Plus |