Clone BS08779 Report

Search the DGRC for BS08779

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptSsu72-RA
Protein status:BS08779.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08779.5prime Sequence

618 bp (617 high quality bases) assembled on 2006-01-11

> BS08779.5prime
GAAGTTATCAGTCGACATGACTGATCCTAGCAAGCTCGCCGTCGCCGTAG
TCTGTTCCTCGAACATGAATCGCTCAATGGAGGCGCACAACTTTCTGGCC
AAGAAGGGTTTCAATGTGCGCTCCTACGGCACCGGCGAGCGCGTCAAGCT
ACCGGGCATGGCGTTCGACAAGCCGAATGTTTACGAGTTTGGCACCAAAT
ACGAGGACATCTACCGCGACCTGGAGTCCAAGGACAAGGAGTTCTACACA
CAGAACGGCCTGCTACACATGCTCGACCGCAATCGTCGCATAAAGAAGTG
CCCGGAACGGTTTCAGGACACCAAAGAGCAGTTCGACATCATCGTCACTG
TGGAAGAGCGCGTCTACGACCTGGTGGTGATGCACATGGAGTCCATGGAA
TCCGTGGACAACCGACCCGTGCACGTTCTCAACGTGGATGTGGTGGACAA
CGCTGAAGATGCGCTAATGGGCGCCTTTGTCATCACAGACATGATAAACA
TGATGGCCAAGTCCACGGACCTGGACAACGACATCGACGAATTGATCCAG
GAGTTCGAGGAGCGCCGCAAGCGGGTCATCCTGCACTCGGTGCTCTTCTA
CTGAAAGCTTTCTAGACC

BS08779.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14216-PA 588 CG14216-RA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
Ssu72-RC 1368 CG14216-RC 83..673 14..604 2955 100 Plus
Ssu72-RA 2186 CG14216-RA 83..673 14..604 2955 100 Plus
Ssu72-RB 2183 CG14216-RB 83..670 14..604 2900 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19664935..19665193 244..502 1295 100 Plus
X 23542271 X 19664643..19664872 14..243 1150 100 Plus
X 23542271 X 19665251..19665353 502..604 515 100 Plus
Blast to na_te.dros performed on 2015-02-10 02:37:09 has no hits.

BS08779.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:00 Download gff for BS08779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14216-PA 1..588 17..604 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:56 Download gff for BS08779.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14216-PA 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:39 Download gff for BS08779.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 80..673 10..604 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:09:39 Download gff for BS08779.5prime
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 80..673 10..604 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:09:39 Download gff for BS08779.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19664640..19664872 10..243 99 -> Plus
X 19664935..19665193 244..502 100 -> Plus
X 19665252..19665353 503..604 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:39 Download gff for BS08779.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19559285..19559386 503..604 100   Plus
arm_X 19558673..19558905 10..243 99 -> Plus
arm_X 19558968..19559226 244..502 100 -> Plus

BS08779.3prime Sequence

618 bp (617 high quality bases) assembled on 2006-01-11

> BS08779.3prime
ATGGTCTAGAAAGCTTTCAGTAGAAGAGCACCGAGTGCAGGATGACCCGC
TTGCGGCGCTCCTCGAACTCCTGGATCAATTCGTCGATGTCGTTGTCCAG
GTCCGTGGACTTGGCCATCATGTTTATCATGTCTGTGATGACAAAGGCGC
CCATTAGCGCATCTTCAGCGTTGTCCACCACATCCACGTTGAGAACGTGC
ACGGGTCGGTTGTCCACGGATTCCATGGACTCCATGTGCATCACCACCAG
GTCGTAGACGCGCTCTTCCACAGTGACGATGATGTCGAACTGCTCTTTGG
TGTCCTGAAACCGTTCCGGGCACTTCTTTATGCGACGATTGCGGTCGAGC
ATGTGTAGCAGGCCGTTCTGTGTGTAGAACTCCTTGTCCTTGGACTCCAG
GTCGCGGTAGATGTCCTCGTATTTGGTGCCAAACTCGTAAACATTCGGCT
TGTCGAACGCCATGCCCGGTAGCTTGACGCGCTCGCCGGTGCCGTAGGAG
CGCACATTGAAACCCTTCTTGGCCAGAAAGTTGTGCGCCTCCATTGAGCG
ATTCATGTTCGAGGAACAGACTACGGCGACGGCGAGCTTGCTAGGATCAG
TCATGTCGACTGATAACT

BS08779.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14216-PA 588 CG14216-RA 1..588 604..17 2940 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ssu72-RC 1368 CG14216-RC 83..673 607..17 2955 100 Minus
Ssu72-RA 2186 CG14216-RA 83..673 607..17 2955 100 Minus
Ssu72-RB 2183 CG14216-RB 83..670 607..17 2900 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19664935..19665193 377..119 1295 100 Minus
X 23542271 X 19664643..19664872 607..378 1150 100 Minus
X 23542271 X 19665251..19665353 119..17 515 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:52:41 has no hits.

BS08779.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:49:59 Download gff for BS08779.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14216-PA 1..588 17..604 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:54 Download gff for BS08779.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14216-PA 1..588 17..604 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:27:04 Download gff for BS08779.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 80..673 17..611 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:13:56 Download gff for BS08779.3prime
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 80..673 17..611 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:13:56 Download gff for BS08779.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19664935..19665193 119..377 100 -> Minus
X 19665252..19665353 17..118 100   Minus
X 19664640..19664872 378..611 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:27:04 Download gff for BS08779.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19558673..19558905 378..611 99 -> Minus
arm_X 19558968..19559226 119..377 100 -> Minus
arm_X 19559285..19559386 17..118 100   Minus

BS08779.complete Sequence

620 bp (620 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636265

> BS08779.complete
GAAGTTATCAGTCGACATGACTGATCCTAGCAAGCTCGCCGTCGCCGTAG
TCTGTTCCTCGAACATGAATCGCTCAATGGAGGCGCACAACTTTCTGGCC
AAGAAGGGTTTCAATGTGCGCTCCTACGGCACCGGCGAGCGCGTCAAGCT
ACCGGGCATGGCGTTCGACAAGCCGAATGTTTACGAGTTTGGCACCAAAT
ACGAGGACATCTACCGCGACCTGGAGTCCAAGGACAAGGAGTTCTACACA
CAGAACGGCCTGCTACACATGCTCGACCGCAATCGTCGCATAAAGAAGTG
CCCGGAACGGTTTCAGGACACCAAAGAGCAGTTCGACATCATCGTCACTG
TGGAAGAGCGCGTCTACGACCTGGTGGTGATGCACATGGAGTCCATGGAA
TCCGTGGACAACCGACCCGTGCACGTTCTCAACGTGGATGTGGTGGACAA
CGCTGAAGATGCGCTAATGGGCGCCTTTGTCATCACAGACATGATAAACA
TGATGGCCAAGTCCACGGACCTGGACAACGACATCGACGAATTGATCCAG
GAGTTCGAGGAGCGCCGCAAGCGGGTCATCCTGCACTCGGTGCTCTTCTA
CTGAAAGCTTTCTAGACCAT

BS08779.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
Ssu72-RC 588 CG14216-PC 1..588 17..604 2940 100 Plus
Ssu72-RA 588 CG14216-PA 1..588 17..604 2940 100 Plus
Ssu72-RB 585 CG14216-PB 1..585 17..604 2860 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Ssu72-RC 1368 CG14216-RC 83..673 14..604 2955 100 Plus
Ssu72-RA 2186 CG14216-RA 83..673 14..604 2955 100 Plus
Ssu72-RB 2183 CG14216-RB 83..670 14..604 2875 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19664935..19665193 244..502 1295 100 Plus
X 23542271 X 19664643..19664872 14..243 1150 100 Plus
X 23542271 X 19665251..19665353 502..604 515 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:18:57 has no hits.

BS08779.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:22 Download gff for BS08779.complete
Subject Subject Range Query Range Percent Splice Strand
CG14216-RA 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:06 Download gff for BS08779.complete
Subject Subject Range Query Range Percent Splice Strand
CG14216-RA 74..667 10..604 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:22:14 Download gff for BS08779.complete
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 86..672 17..603 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:22 Download gff for BS08779.complete
Subject Subject Range Query Range Percent Splice Strand
CG14216-RA 74..667 10..604 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:48 Download gff for BS08779.complete
Subject Subject Range Query Range Percent Splice Strand
Ssu72-RA 86..672 17..603 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:48 Download gff for BS08779.complete
Subject Subject Range Query Range Percent Splice Strand
X 19664646..19664872 17..243 100 -> Plus
X 19664935..19665193 244..502 100 -> Plus
X 19665252..19665352 503..603 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:22:14 Download gff for BS08779.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19558679..19558905 17..243 100 -> Plus
arm_X 19558968..19559226 244..502 100 -> Plus
arm_X 19559285..19559385 503..603 100   Plus

BS08779.pep Sequence

Translation from 16 to 603

> BS08779.pep
MTDPSKLAVAVVCSSNMNRSMEAHNFLAKKGFNVRSYGTGERVKLPGMAF
DKPNVYEFGTKYEDIYRDLESKDKEFYTQNGLLHMLDRNRRIKKCPERFQ
DTKEQFDIIVTVEERVYDLVVMHMESMESVDNRPVHVLNVDVVDNAEDAL
MGAFVITDMINMMAKSTDLDNDIDELIQEFEERRKRVILHSVLFY*

BS08779.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Ssu72-PC 195 CG14216-PC 1..195 1..195 1007 100 Plus
Ssu72-PA 195 CG14216-PA 1..195 1..195 1007 100 Plus
Ssu72-PB 194 CG14216-PB 1..194 1..195 986 99 Plus