Clone BS08780 Report

Search the DGRC for BS08780

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:87
Well:80
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS08780.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS08780.3prime Sequence

363 bp (362 high quality bases) assembled on 2006-01-11

> BS08780.3prime
ATGGTCTAGAAAGCTTTCAACACGCCGGGCGAGGCCGTACGCAATGCATA
ATAGAGGACACACAATACCTCCGAACCAACGAACCACCGATCCTGTGGAC
CACCGTCATCCTGCCACCGCCGGCGGAGATGTCCTTTTTTGCGCATAGCC
ACAGGCAGAAGGCAACAAAAAATGCGGAAAATACATGTCGCCGTGTTTGT
GTGCTCCTGCTGCAACGGACGCAATTCAAAGGAATTTTTTGTGGCTCGCA
GAGCGAGCGAGCGAGAGAGCCGAGCCGGCCACGTCGTCCTGTGGTCCTTC
GCCTTTCGATCCCCTCACTCCTCGCTCCTGTCCTGTCCCGCTTGACCATG
TCGACTGATAACT

BS08780.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32331-PA 333 CG32331-RA 1..333 349..17 1665 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 23:21:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1479681..1480016 352..17 1680 100 Minus
Blast to na_te.dros performed 2015-02-11 23:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 370..437 316..249 106 61.8 Minus
gypsy5 7369 gypsy5 GYPSY5 7369bp 7309..7365 316..260 105 64.9 Minus

BS08780.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:01 Download gff for BS08780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32331-PA 1..333 17..349 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:57 Download gff for BS08780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32331-PA 1..333 17..349 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:36:37 Download gff for BS08780.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1479675..1480024 7..358 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:36:37 Download gff for BS08780.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1479675..1480024 7..358 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:34:01 Download gff for BS08780.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1479675..1480024 7..358 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:34:01 Download gff for BS08780.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1479675..1480024 7..358 98   Minus

BS08780.5prime Sequence

363 bp (362 high quality bases) assembled on 2006-01-11

> BS08780.5prime
GAAGTTATCAGTCGACATGGTCAAGCGGGACAGGACAGGAGCGAGGAGTG
AGGGGATCGAAAGGCGAAGGACCACAGGACGACGTGGCCGGCTCGGCTCT
CTCGCTCGCTCGCTCTGCGAGCCACAAAAAATTCCTTTGAATTGCGTCCG
TTGCAGCAGGAGCACACAAACACGGCGACATGTATTTTCCGCATTTTTTG
TTGCCTTCTGCCTGTGGCTATGCGCAAAAAAGGACATCTCCGCCGGCGGT
GGCAGGATGACGGTGGTCCACAGGATCGGTGGTTCGTTGGTTCGGAGGTA
TTGTGTGTCCTCTATTATGCATTGCGTACGGCCTCGCCCGGCGTGTTGAA
AGCTTTCTAGACC

BS08780.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32331-PA 333 CG32331-RA 1..333 17..349 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 11:53:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1479681..1480016 14..349 1680 100 Plus
Blast to na_te.dros performed 2015-02-11 11:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 370..437 50..117 106 61.8 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 7309..7365 50..106 105 64.9 Plus

BS08780.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:02 Download gff for BS08780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32331-PA 1..333 17..349 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:59 Download gff for BS08780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32331-PA 1..333 17..349 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:46 Download gff for BS08780.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1479675..1480024 8..359 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:46 Download gff for BS08780.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1479675..1480024 8..359 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:33:41 Download gff for BS08780.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1479675..1480024 8..359 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:33:41 Download gff for BS08780.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1479675..1480024 8..359 98   Plus

BS08780.complete Sequence

365 bp (365 high quality bases) assembled on 2006-01-25

> BS08780.complete
GAAGTTATCAGTCGACATGGTCAAGCGGGACAGGACAGGAGCGAGGAGTG
AGGGGATCGAAAGGCGAAGGACCACAGGACGACGTGGCCGGCTCGGCTCT
CTCGCTCGCTCGCTCTGCGAGCCACAAAAAATTCCTTTGAATTGCGTCCG
TTGCAGCAGGAGCACACAAACACGGCGACATGTATTTTCCGCATTTTTTG
TTGCCTTCTGCCTGTGGCTATGCGCAAAAAAGGACATCTCCGCCGGCGGT
GGCAGGATGACGGTGGTCCACAGGATCGGTGGTTCGTTGGTTCGGAGGTA
TTGTGTGTCCTCTATTATGCATTGCGTACGGCCTCGCCCGGCGTGTTGAA
AGCTTTCTAGACCAT

BS08780.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 16:09:15 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 16:09:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1479681..1480016 14..349 1680 100 Plus
Blast to na_te.dros performed 2014-11-26 16:09:13
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 370..437 50..117 106 61.8 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 7309..7365 50..106 105 64.9 Plus

BS08780.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-22 00:01:23 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-22 00:01:23 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:24 Download gff for BS08780.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1479684..1480015 17..348 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:24 Download gff for BS08780.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1479684..1480015 17..348 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:32 Download gff for BS08780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1479684..1480015 17..348 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:32 Download gff for BS08780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1479684..1480015 17..348 100   Plus

BS08780.pep Sequence

Translation from 16 to 348

> BS08780.pep
MVKRDRTGARSEGIERRRTTGRRGRLGSLARSLCEPQKIPLNCVRCSRST
QTRRHVFSAFFVAFCLWLCAKKDISAGGGRMTVVHRIGGSLVRRYCVSSI
MHCVRPRPAC*
Sequence BS08780.pep has no blast hits.