Clone Sequence Records
BS08780.3prime Sequence
363 bp (362 high quality bases) assembled on 2006-01-11
> BS08780.3prime
ATGGTCTAGAAAGCTTTCAACACGCCGGGCGAGGCCGTACGCAATGCATA
ATAGAGGACACACAATACCTCCGAACCAACGAACCACCGATCCTGTGGAC
CACCGTCATCCTGCCACCGCCGGCGGAGATGTCCTTTTTTGCGCATAGCC
ACAGGCAGAAGGCAACAAAAAATGCGGAAAATACATGTCGCCGTGTTTGT
GTGCTCCTGCTGCAACGGACGCAATTCAAAGGAATTTTTTGTGGCTCGCA
GAGCGAGCGAGCGAGAGAGCCGAGCCGGCCACGTCGTCCTGTGGTCCTTC
GCCTTTCGATCCCCTCACTCCTCGCTCCTGTCCTGTCCCGCTTGACCATG
TCGACTGATAACT
BS08780.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32331-PA | 333 | CG32331-RA | 1..333 | 349..17 | 1665 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 23:21:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1479681..1480016 | 352..17 | 1680 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 23:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 370..437 | 316..249 | 106 | 61.8 | Minus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 7309..7365 | 316..260 | 105 | 64.9 | Minus |
BS08780.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:01 Download gff for
BS08780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32331-PA | 1..333 | 17..349 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:57 Download gff for
BS08780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32331-PA | 1..333 | 17..349 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:36:37 Download gff for
BS08780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1479675..1480024 | 7..358 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:36:37 Download gff for
BS08780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1479675..1480024 | 7..358 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:34:01 Download gff for
BS08780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1479675..1480024 | 7..358 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:34:01 Download gff for
BS08780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1479675..1480024 | 7..358 | 98 | | Minus |
BS08780.5prime Sequence
363 bp (362 high quality bases) assembled on 2006-01-11
> BS08780.5prime
GAAGTTATCAGTCGACATGGTCAAGCGGGACAGGACAGGAGCGAGGAGTG
AGGGGATCGAAAGGCGAAGGACCACAGGACGACGTGGCCGGCTCGGCTCT
CTCGCTCGCTCGCTCTGCGAGCCACAAAAAATTCCTTTGAATTGCGTCCG
TTGCAGCAGGAGCACACAAACACGGCGACATGTATTTTCCGCATTTTTTG
TTGCCTTCTGCCTGTGGCTATGCGCAAAAAAGGACATCTCCGCCGGCGGT
GGCAGGATGACGGTGGTCCACAGGATCGGTGGTTCGTTGGTTCGGAGGTA
TTGTGTGTCCTCTATTATGCATTGCGTACGGCCTCGCCCGGCGTGTTGAA
AGCTTTCTAGACC
BS08780.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32331-PA | 333 | CG32331-RA | 1..333 | 17..349 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 11:53:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1479681..1480016 | 14..349 | 1680 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 11:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 370..437 | 50..117 | 106 | 61.8 | Plus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 7309..7365 | 50..106 | 105 | 64.9 | Plus |
BS08780.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:02 Download gff for
BS08780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32331-PA | 1..333 | 17..349 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:52:59 Download gff for
BS08780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32331-PA | 1..333 | 17..349 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:46 Download gff for
BS08780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1479675..1480024 | 8..359 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:46 Download gff for
BS08780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1479675..1480024 | 8..359 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:33:41 Download gff for
BS08780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1479675..1480024 | 8..359 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:33:41 Download gff for
BS08780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1479675..1480024 | 8..359 | 98 | | Plus |
BS08780.complete Sequence
365 bp (365 high quality bases) assembled on 2006-01-25
> BS08780.complete
GAAGTTATCAGTCGACATGGTCAAGCGGGACAGGACAGGAGCGAGGAGTG
AGGGGATCGAAAGGCGAAGGACCACAGGACGACGTGGCCGGCTCGGCTCT
CTCGCTCGCTCGCTCTGCGAGCCACAAAAAATTCCTTTGAATTGCGTCCG
TTGCAGCAGGAGCACACAAACACGGCGACATGTATTTTCCGCATTTTTTG
TTGCCTTCTGCCTGTGGCTATGCGCAAAAAAGGACATCTCCGCCGGCGGT
GGCAGGATGACGGTGGTCCACAGGATCGGTGGTTCGTTGGTTCGGAGGTA
TTGTGTGTCCTCTATTATGCATTGCGTACGGCCTCGCCCGGCGTGTTGAA
AGCTTTCTAGACCAT
BS08780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 16:09:15 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 16:09:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1479681..1480016 | 14..349 | 1680 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 370..437 | 50..117 | 106 | 61.8 | Plus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 7309..7365 | 50..106 | 105 | 64.9 | Plus |
BS08780.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-22 00:01:23 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-22 00:01:23 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:24 Download gff for
BS08780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1479684..1480015 | 17..348 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:24 Download gff for
BS08780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1479684..1480015 | 17..348 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:32 Download gff for
BS08780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1479684..1480015 | 17..348 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:32 Download gff for
BS08780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1479684..1480015 | 17..348 | 100 | | Plus |
BS08780.pep Sequence
Translation from 16 to 348
> BS08780.pep
MVKRDRTGARSEGIERRRTTGRRGRLGSLARSLCEPQKIPLNCVRCSRST
QTRRHVFSAFFVAFCLWLCAKKDISAGGGRMTVVHRIGGSLVRRYCVSSI
MHCVRPRPAC*
Sequence BS08780.pep has no blast hits.