Clone Sequence Records
BS08781.3prime Sequence
908 bp (827 high quality bases) assembled on 2006-01-11
> BS08781.3prime
ATGGTCTAGAAAGCTTTTAGATTGCGCTCTTTTTTCGACAAACAGGAGAG
CCAAGTGGCACCACTTGCTGGAATGGAATGGCCTGCTCCTCGGCGAAGGC
CAGGAAATCAATGCCGTAATGCTGTATCAGTTTTGTGGTCATGACTACAT
CAGCCTCTGCCTGGTGAGCACTAAGTGCTGGTATCTTAAATATTCTCGTG
TAGAGACTTTCCAAATTATAAACTCCGCGGGGGGGATAGCGTTTGTTCTC
GGCACACTTGCATCCACTGAACAGCTGGCGTCGTGACCTAAACTCATCGG
GTTTCCGCTTGGGAGGGGTCTGCTCCTCCAAGTCATCCTCATCGCCGTCG
CGTAATAACTTACGCTTGGCGAATGCCTCTGTAGGCTTTAAAATTGGACG
ATTTGGAGTGGTTTCGTTTCTGGTTCGCCAATCGATGTTCACGACCGCTT
CTGGCTCCTTGAGGCAAGTTTCAGTATTCTGTTTGGGTTTCAGCTCCGGA
ATGATTTCCTGCACATCGTTGGGTACTTTCAACTGACTGGTTTCTTTTTG
TTGTGTGTCGTCAATCTCCATGAAGGCGCGCAGTGAGTCAACACAAGTCA
GGGATTGGGGAAGCTCTATGTTTAGTTTCTCAAATGCCTGCCTCAGAATG
GGAAAATCGAAGCCCCAACCATTGTGAGCCACCAGGCAAACCGGACTCGG
CAAGTGCTTTAGAAAACTGACGATGAGTTGCGCGGCATCCGTGTCTAGCT
GGGACTCCCGCTCCAGCAAGTAGTTGCTCAGACCTGTTATTCTCTCCGCT
TCCGGGTCCACTACCATGGACGGCTGGAAGAGCACATTCAATTTGTGCAG
CACCCGCGGTGCCGCTGGCAGCTCCTGCTGCTCATCCTGGTCCTGCTCCT
TCTTTTTC
BS08781.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3165-PA | 1056 | CG3165-RA | 165..1056 | 908..17 | 4460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3165-RB | 1221 | CG3165-RB | 285..1176 | 908..17 | 4460 | 100 | Minus |
| CG3165-RA | 1323 | CG3165-RA | 285..1176 | 908..17 | 4460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2977585..2978353 | 785..17 | 3845 | 100 | Minus |
| 2L | 23513712 | 2L | 2977406..2977532 | 908..782 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:50:46 has no hits.
BS08781.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:03 Download gff for
BS08781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-PA | 165..1056 | 17..908 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:00 Download gff for
BS08781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-PA | 165..1056 | 17..908 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:08:14 Download gff for
BS08781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-RA | 285..1185 | 7..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:28 Download gff for
BS08781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-RA | 285..1185 | 7..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:28 Download gff for
BS08781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2977406..2977530 | 784..908 | 100 | -> | Minus |
| 2L | 2977587..2978362 | 7..783 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:08:14 Download gff for
BS08781.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2977406..2977530 | 784..908 | 100 | -> | Minus |
| arm_2L | 2977587..2978362 | 7..783 | 99 | | Minus |
BS08781.5prime Sequence
898 bp (782 high quality bases) assembled on 2006-01-11
> BS08781.5prime
GAAGTTATCAGTCGACATGGCTCCGAACGATGCAGTTGCGGAGCACGCGG
AGGAGCAGCCAAAGATTTCCACATTTGCCGTTCTGGACCTAGAGACCACC
AACTTGCCTGCCTACAGGAACAACCGAGTGAGCATTACGGAGTTGTGCAT
TTACGCCTTTGAAGCCGCGCTCCTTAAGAAGAAAAAGAAGGAGCAGGACC
AGGATGAGCAGCAGGAGCTGCCAGCGGCACCGCGGGTGCTGCACAAATTG
AATGTGCTCTTCCAGCCGTCCATGGTAGTGGACCCGGAAGCGGAGAGAAT
AACAGGTCTGAGCAACTACTTGCTGGAGCGGGAGTCCCAGCTAGACACGG
ATGCCGCGCAACTCATCGTCAGTTTTCTAAAGCACTTGCCGAGTCCGGTT
TGCCTGGTGGCTCACAATGGTTGGGGCTTCGATTTTCCCATTCTGAGGCA
GGCATTTGAGAAACTAAACATAGAGCTTCCCCAATCCCTGACTTGTGTTG
ACTCACTGCGCGCCTTCATGGAGATTGACGACACACAACAAAAAGAAACC
AGTCAGTTGAAAGTACCCAACGATGTGCAGGAAATCATTCCGGAGCTGAA
ACCCAAACAGAATACTGAAACTTGCCTCAAGGAGCCAGAAGCGGTCGTGA
ACATCGATTGGCGAACCAGAAACGAAACCACTCCAAATCGTCCAATTTTA
AAGCCTACAGAGGCATTCGCCAAGCGTAAGTTATTACGCGACGGCGATGA
GGATGACTTGGAGGAGCAGACCCCTCCCAAGCGGAAACCCGATGAGTTTA
GGTCACGACGCCAGCTGTTCAGTGGATGCAAGTGTGCCGAGAACAAACGC
TATCCCCCCCGCGGAGTTTATAATTGGGAAGTCTCTACACGAGAATAT
BS08781.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3165-PA | 1056 | CG3165-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3165-RB | 1221 | CG3165-RB | 121..1003 | 17..898 | 4375 | 99.8 | Plus |
| CG3165-RA | 1323 | CG3165-RA | 121..1003 | 17..898 | 4375 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2977585..2978180 | 304..898 | 2915 | 99.7 | Plus |
| 2L | 23513712 | 2L | 2977242..2977532 | 17..307 | 1455 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 02:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G2 | 3102 | G2 G2 3102bp | 420..468 | 14..61 | 125 | 75.5 | Plus |
BS08781.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:04 Download gff for
BS08781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-PA | 1..883 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:02 Download gff for
BS08781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-PA | 1..883 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:17:37 Download gff for
BS08781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-RA | 121..1003 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:05:24 Download gff for
BS08781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-RA | 121..1003 | 17..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:05:24 Download gff for
BS08781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2977242..2977530 | 17..305 | 100 | -> | Plus |
| 2L | 2977587..2978180 | 306..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:17:37 Download gff for
BS08781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2977242..2977530 | 17..305 | 100 | -> | Plus |
| arm_2L | 2977587..2978180 | 306..898 | 99 | | Plus |
BS08781.complete Sequence
1088 bp (1088 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636266
> BS08781.complete
GAAGTTATCAGTCGACATGGCTCCGAACGATGCAGTTGCGGAGCACGCGG
AGGAGCAGCCAAAGATTTCCACATTTGCCGTTCTGGACCTAGAGACCACC
AACTTGCCTGCCTACAGGAACAACCGAGTGAGCATTACGGAGTTGTGCAT
TTACGCCTTTGAAGCCGCGCTCCTTAAGAAGAAAAAGAAGGAGCAGGACC
AGGATGAGCAGCAGGAGCTGCCAGCGGCACCGCGGGTGCTGCACAAATTG
AATGTGCTCTTCCAGCCGTCCATGGTAGTGGACCCGGAAGCGGAGAGAAT
AACAGGTCTGAGCAACTACTTGCTGGAGCGGGAGTCCCAGCTAGACACGG
ATGCCGCGCAACTCATCGTCAGTTTTCTAAAGCACTTGCCGAGTCCGGTT
TGCCTGGTGGCTCACAATGGTTGGGGCTTCGATTTTCCCATTCTGAGGCA
GGCATTTGAGAAACTAAACATAGAGCTTCCCCAATCCCTGACTTGTGTTG
ACTCACTGCGCGCCTTCATGGAGATTGACGACACACAACAAAAAGAAACC
AGTCAGTTGAAAGTACCCAACGATGTGCAGGAAATCATTCCGGAGCTGAA
ACCCAAACAGAATACTGAAACTTGCCTCAAGGAGCCAGAAGCGGTCGTGA
ACATCGATTGGCGAACCAGAAACGAAACCACTCCAAATCGTCCAATTTTA
AAGCCTACAGAGGCATTCGCCAAGCGTAAGTTATTACGCGACGGCGATGA
GGATGACTTGGAGGAGCAGACCCCTCCCAAGCGGAAACCCGATGAGTTTA
GGTCACGACGCCAGCTGTTCAGTGGATGCAAGTGTGCCGAGAACAAACGC
TATCCCCCCCGCGGAGTTTATAATTTGGAAAGTCTCTACACGAGAATATT
TAAGATACCAGCACTTAGTGCTCACCAGGCAGAGGCTGATGTAGTCATGA
CCACAAAACTGATACAGCATTACGGCATTGATTTCCTGGCCTTCGCCGAG
GAGCAGGCCATTCCATTCCAGCAAGTGGTGCCACTTGGCTCTCCTGTTTG
TCGAAAAAAGAGCGCAATCTAAAAGCTTTCTAGACCAT
BS08781.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3165-RB | 1056 | CG3165-PB | 1..1056 | 17..1072 | 5280 | 100 | Plus |
| CG3165-RA | 1056 | CG3165-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3165-RB | 1221 | CG3165-RB | 121..1176 | 17..1072 | 5280 | 100 | Plus |
| CG3165-RA | 1323 | CG3165-RA | 121..1176 | 17..1072 | 5280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2977585..2978353 | 304..1072 | 3845 | 100 | Plus |
| 2L | 23513712 | 2L | 2977242..2977532 | 17..307 | 1455 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G2 | 3102 | G2 G2 3102bp | 420..468 | 14..61 | 125 | 75.5 | Plus |
BS08781.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:24 Download gff for
BS08781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-RA | 1..1056 | 17..1072 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:39 Download gff for
BS08781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-RA | 116..1180 | 17..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:41 Download gff for
BS08781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-RA | 121..1174 | 17..1070 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:25 Download gff for
BS08781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-RA | 116..1180 | 17..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:51 Download gff for
BS08781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3165-RA | 121..1174 | 17..1070 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:51 Download gff for
BS08781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2977242..2977530 | 17..305 | 100 | -> | Plus |
| 2L | 2977587..2978351 | 306..1070 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:41 Download gff for
BS08781.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2977242..2977530 | 17..305 | 100 | -> | Plus |
| arm_2L | 2977587..2978351 | 306..1070 | 100 | | Plus |
BS08781.pep Sequence
Translation from 16 to 1071
> BS08781.pep
MAPNDAVAEHAEEQPKISTFAVLDLETTNLPAYRNNRVSITELCIYAFEA
ALLKKKKKEQDQDEQQELPAAPRVLHKLNVLFQPSMVVDPEAERITGLSN
YLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNGWGFDFPILRQAFEKL
NIELPQSLTCVDSLRAFMEIDDTQQKETSQLKVPNDVQEIIPELKPKQNT
ETCLKEPEAVVNIDWRTRNETTPNRPILKPTEAFAKRKLLRDGDEDDLEE
QTPPKRKPDEFRSRRQLFSGCKCAENKRYPPRGVYNLESLYTRIFKIPAL
SAHQAEADVVMTTKLIQHYGIDFLAFAEEQAIPFQQVVPLGSPVCRKKSA
I*
BS08781.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3165-PB | 351 | CG3165-PB | 1..351 | 1..351 | 1818 | 100 | Plus |
| CG3165-PA | 351 | CG3165-PA | 1..351 | 1..351 | 1818 | 100 | Plus |
