Clone Sequence Records
BS08791.3prime Sequence
896 bp (793 high quality bases) assembled on 2006-01-11
> BS08791.3prime
ATGGTCTAGAAAGCTTTTAGTCTTCATCCGAGTAATCTGAACTTTCGGAA
CTAGTAATATCACTTGAAATCATCTCCAGCCAATGATAATCTCGCCGATC
TACGTAGTCCCAGAGATATATATCAAGTAAATCGATTATTTCATTCTGGC
TCTGTAACTTTCGGGTGCGCTTCGGCAAACCCACATCGACGATATCTCCG
TTGGGCAGAGCGTGCTTGTAGAAACACTTGTTACCAAAGGGGCACTTGCC
CTCTCCTTTTTTAAAGTATTTGCAGTCCTTTGCTCCCAAAGCGGCGCGGT
AATCGTTGAGCAATTTGTCCTTTTCCTCCTTGGTCTCCATCCAGAACGCA
CTGGGACAGACAAAATCCGAGCACACGCGACATTCGGGGCAAGCTCGCGT
TATTTTGTTCTCAAACTGTTTGGCCTGACGCCATGTGCGAATGCACTCCA
AGCAGAATATGTGGTTGCAGTTGGGGAGAATGCCGAAGCGCTTTTCTCTT
CCCGCCTTTTCCATAATCGTGTCAAAGCAGATGCCGCACGTCTTGTCCTT
GGATCTGGCAATGGCGAAGGACAGCTCCATGGCCTGCTCGTGCTGCTGAA
GGCACTCACGGTTGTGACTCCTCCGCTGAACTTGATCCGTGGGATGCAGG
CAATACTGGTCGCACATTTCGCACAGCTCCATGTGAATGGGGTAAGCGGA
GAATTCGCCCCAGGCGCAGGAACTGTTCTCCTCGCCATAGTCCTCTTTGT
TCAGAGACGAAGGTCCGCCCACTACTTCGGCCCAGGAGACACCCGGGGCT
AATGTATCGTAGCTGGCTCCAGCCTGCGCCTCCATCACCGCCTCAGGGTC
CACAGTGGTCTCAAATTCGCTTTGTTCGTGGGCAGTATAGCGCTTT
BS08791.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7184-PA | 1161 | Mkrn1-RA | 282..1161 | 896..17 | 4400 | 100 | Minus |
| CG7184-PB | 1161 | Mkrn1-RB | 282..1161 | 896..17 | 4400 | 100 | Minus |
| CG12477-PA | 798 | CG12477-RA | 287..421 | 549..415 | 175 | 85.1 | Minus |
| CG12477-PA | 798 | CG12477-RA | 436..464 | 400..372 | 145 | 100 | Minus |
| CG5347-PA | 858 | CG5347-RA | 547..594 | 469..422 | 140 | 91.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:56:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkrn1-RC | 2229 | CG7184-RC | 487..1366 | 896..17 | 4400 | 100 | Minus |
| Mkrn1-RB | 2163 | CG7184-RB | 421..1300 | 896..17 | 4400 | 100 | Minus |
| Mkrn1-RA | 2884 | CG7184-RA | 495..1374 | 896..17 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:56:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21532339..21532839 | 396..896 | 2505 | 100 | Plus |
| 3L | 28110227 | 3L | 21531758..21532032 | 122..396 | 1375 | 100 | Plus |
| 3L | 28110227 | 3L | 18722464..18722851 | 172..559 | 860 | 81.4 | Plus |
| X | 23542271 | X | 14777206..14777681 | 687..212 | 745 | 77.1 | Minus |
| 3L | 28110227 | 3L | 21531469..21531573 | 17..121 | 525 | 100 | Plus |
| X | 23542271 | X | 14775563..14775931 | 580..212 | 495 | 75.6 | Minus |
Blast to na_te.dros performed on 2015-02-01 06:56:23 has no hits.
BS08791.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:19 Download gff for
BS08791.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkrn1-PB | 282..1161 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:20 Download gff for
BS08791.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7184-PB | 282..1161 | 17..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:09:00 Download gff for
BS08791.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkrn1-RA | 495..1382 | 5..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:39:25 Download gff for
BS08791.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkrn1-RA | 495..1382 | 5..896 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:39:25 Download gff for
BS08791.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21531461..21531573 | 5..121 | 96 | <- | Plus |
| 3L | 21531758..21532031 | 122..395 | 100 | <- | Plus |
| 3L | 21532339..21532839 | 396..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:09:00 Download gff for
BS08791.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21524561..21524673 | 5..121 | 96 | <- | Plus |
| arm_3L | 21524858..21525131 | 122..395 | 100 | <- | Plus |
| arm_3L | 21525439..21525939 | 396..896 | 100 | | Plus |
BS08791.5prime Sequence
835 bp (783 high quality bases) assembled on 2006-01-11
> BS08791.5prime
GAAGTTATCAGTCGACATGAGTGCCGTCACCAGCAGCGATACAGCCATCA
GCGGCATGGCTCTTGGCCGGAGCCAGACCATCTGCCGCTACTACGTGCGC
GGCATCTGCCGCTTTGGGGAACTTTGCCGCTTCTCCCACGACCTGAGCCG
CGGTCGTCCCGAGTGCGAGGAGCAGGTGGCCACCGACGTGCTGCCGAAGC
CTAGTACAAGCAGCAGCAGCACCATTGGCAGCCGCAGCGCCAGCATCTCC
AGTCAGCAGAGGAACTGGGCGAACGCCCCTGTGTTTGTGCCTAGCCAAAA
GCGCTATACTGCCCACGAACAAAGCGAATTTGAGACCACTGTGGACCCTG
AGGCGGTGATGGAGGCGCAGGCTGGAGCCAGCTACGATACATTAGCCCCG
GGTGTCTCCTGGGCCGAAGTAGTGGGCGGACCTTCGTCTCTGAACAAAGA
GGACTATGGCGAGGAGAACAGTTCCTGCGCCTGGGGCGAATTCTCCGCTT
ACCCCATTCACATGGAGCTGTGCGAAATGTGCGACCAGTATTGCCTGCAT
CCCACGGATCAAGTTCAGCGGAGGAGTCACAACCGTGAGTGCCTTCAGCA
GCACGAGCAGGCCATGGAGCTGTCCTTCGCCATTGCCAGATCCAAGGACA
AGACGTGCGGCATCTGCTTTGACACGATTATGGAAAAGGCGGGAAGAGAA
AAGCGCTTCGGCATTCTCCCCAACTGCAACCACATATTCTGCTTGGAGTG
CATTCGCACATGGCGTCAGGCCAAACAGTTTGAGAACAAAATAACGCGAG
CTTGCCCCGAATGTCGCGTGTGCTCGGATTTTGTC
BS08791.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7184-PA | 1161 | Mkrn1-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
| CG7184-PB | 1161 | Mkrn1-RB | 1..819 | 17..835 | 4095 | 100 | Plus |
| CG12477-PA | 798 | CG12477-RA | 287..421 | 645..779 | 175 | 85.1 | Plus |
| CG12477-PA | 798 | CG12477-RA | 436..464 | 794..822 | 145 | 100 | Plus |
| CG5347-PA | 858 | CG5347-RA | 547..594 | 725..772 | 140 | 91.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkrn1-RC | 2229 | CG7184-RC | 202..1024 | 13..835 | 4100 | 99.9 | Plus |
| Mkrn1-RB | 2163 | CG7184-RB | 136..958 | 13..835 | 4100 | 99.9 | Plus |
| Mkrn1-RA | 2884 | CG7184-RA | 210..1032 | 13..835 | 4100 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21532339..21533124 | 798..13 | 3915 | 99.9 | Minus |
| X | 23542271 | X | 14777206..14777518 | 507..819 | 515 | 77.6 | Plus |
| 3L | 28110227 | 3L | 18722664..18722851 | 822..635 | 490 | 84 | Minus |
| X | 23542271 | X | 14775563..14775777 | 614..828 | 310 | 76.3 | Plus |
| 3L | 28110227 | 3L | 21531995..21532032 | 835..798 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:35:20 has no hits.
BS08791.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:20 Download gff for
BS08791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkrn1-PB | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:22 Download gff for
BS08791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7184-PB | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:35:33 Download gff for
BS08791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkrn1-RA | 208..1032 | 10..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:15:32 Download gff for
BS08791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkrn1-RA | 208..1032 | 10..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:15:32 Download gff for
BS08791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21531995..21532031 | 799..835 | 100 | <- | Minus |
| 3L | 21532339..21533126 | 10..798 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:35:33 Download gff for
BS08791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21525095..21525131 | 799..835 | 100 | <- | Minus |
| arm_3L | 21525439..21526226 | 10..798 | 99 | | Minus |
BS08791.complete Sequence
1193 bp (1193 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636267
> BS08791.complete
GAAGTTATCAGTCGACATGAGTGCCGTCACCAGCAGCGATACAGCCATCA
GCGGCATGGCTCTTGGCCGGAGCCAGACCATCTGCCGCTACTACGTGCGC
GGCATCTGCCGCTTTGGGGAACTTTGCCGCTTCTCCCACGACCTGAGCCG
CGGTCGTCCCGAGTGCGAGGAGCAGGTGGCCACCGACGTGCTGCCGAAGC
CTAGTACAAGCAGCAGCAGCACCATTGGCAGCCGCAGCGCCAGCATCTCC
AGTCAGCAGAGGAACTGGGCGAACGCCCCTGTGTTTGTGCCTAGCCAAAA
GCGCTATACTGCCCACGAACAAAGCGAATTTGAGACCACTGTGGACCCTG
AGGCGGTGATGGAGGCGCAGGCTGGAGCCAGCTACGATACATTAGCCCCG
GGTGTCTCCTGGGCCGAAGTAGTGGGCGGACCTTCGTCTCTGAACAAAGA
GGACTATGGCGAGGAGAACAGTTCCTGCGCCTGGGGCGAATTCTCCGCTT
ACCCCATTCACATGGAGCTGTGCGAAATGTGCGACCAGTATTGCCTGCAT
CCCACGGATCAAGTTCAGCGGAGGAGTCACAACCGTGAGTGCCTTCAGCA
GCACGAGCAGGCCATGGAGCTGTCCTTCGCCATTGCCAGATCCAAGGACA
AGACGTGCGGCATCTGCTTTGACACGATTATGGAAAAGGCGGGAAGAGAA
AAGCGCTTCGGCATTCTCCCCAACTGCAACCACATATTCTGCTTGGAGTG
CATTCGCACATGGCGTCAGGCCAAACAGTTTGAGAACAAAATAACGCGAG
CTTGCCCCGAATGTCGCGTGTGCTCGGATTTTGTCTGTCCCAGTGCGTTC
TGGATGGAGACCAAGGAGGAAAAGGACAAATTGCTCAACGATTACCGCGC
CGCTTTGGGAGCAAAGGACTGCAAATACTTTAAAAAAGGAGAGGGCAAGT
GCCCCTTTGGTAACAAGTGTTTCTACAAGCACGCTCTGCCCAACGGAGAT
ATCGTCGATGTGGGTTTGCCGAAGCGCACCCGAAAGTTACAGAGCCAGAA
TGAAATAATCGATTTACTTGATATATATCTCTGGGACTACGTAGATCGGC
GAGATTATCATTGGCTGGAGATGATTTCAAGTGATATTACTAGTTCCGAA
AGTTCAGATTACTCGGATGAAGACTAAAAGCTTTCTAGACCAT
BS08791.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkrn1-RC | 1161 | CG7184-PC | 1..1161 | 17..1177 | 5805 | 100 | Plus |
| Mkrn1-RB | 1161 | CG7184-PB | 1..1161 | 17..1177 | 5805 | 100 | Plus |
| Mkrn1-RA | 1161 | CG7184-PA | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:25:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkrn1-RC | 2229 | CG7184-RC | 202..1366 | 13..1177 | 5810 | 99.9 | Plus |
| Mkrn1-RB | 2163 | CG7184-RB | 136..1300 | 13..1177 | 5810 | 99.9 | Plus |
| Mkrn1-RA | 2884 | CG7184-RA | 210..1374 | 13..1177 | 5810 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:25:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21532339..21533124 | 798..13 | 3915 | 99.9 | Minus |
| 3L | 28110227 | 3L | 21531758..21532032 | 1072..798 | 1375 | 100 | Minus |
| 3L | 28110227 | 3L | 18722464..18722851 | 1022..635 | 860 | 81.4 | Minus |
| X | 23542271 | X | 14777206..14777681 | 507..982 | 745 | 77.1 | Plus |
| 3L | 28110227 | 3L | 21531469..21531573 | 1177..1073 | 525 | 100 | Minus |
| X | 23542271 | X | 14775563..14775931 | 614..982 | 495 | 75.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:25:19 has no hits.
BS08791.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:26 Download gff for
BS08791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkrn1-RB | 1..1161 | 17..1177 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:42 Download gff for
BS08791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkrn1-RB | 111..1285 | 10..1189 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:28 Download gff for
BS08791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkrn1-RA | 214..1372 | 17..1175 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:26 Download gff for
BS08791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkrn1-RB | 111..1285 | 10..1189 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:21:03 Download gff for
BS08791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mkrn1-RA | 214..1372 | 17..1175 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:21:03 Download gff for
BS08791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21531758..21532031 | 799..1072 | 100 | <- | Minus |
| 3L | 21532339..21533120 | 17..798 | 100 | | Minus |
| 3L | 21531471..21531573 | 1073..1175 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:28 Download gff for
BS08791.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21524571..21524673 | 1073..1175 | 100 | <- | Minus |
| arm_3L | 21524858..21525131 | 799..1072 | 100 | <- | Minus |
| arm_3L | 21525439..21526220 | 17..798 | 100 | | Minus |
BS08791.pep Sequence
Translation from 16 to 1176
> BS08791.pep
MSAVTSSDTAISGMALGRSQTICRYYVRGICRFGELCRFSHDLSRGRPEC
EEQVATDVLPKPSTSSSSTIGSRSASISSQQRNWANAPVFVPSQKRYTAH
EQSEFETTVDPEAVMEAQAGASYDTLAPGVSWAEVVGGPSSLNKEDYGEE
NSSCAWGEFSAYPIHMELCEMCDQYCLHPTDQVQRRSHNRECLQQHEQAM
ELSFAIARSKDKTCGICFDTIMEKAGREKRFGILPNCNHIFCLECIRTWR
QAKQFENKITRACPECRVCSDFVCPSAFWMETKEEKDKLLNDYRAALGAK
DCKYFKKGEGKCPFGNKCFYKHALPNGDIVDVGLPKRTRKLQSQNEIIDL
LDIYLWDYVDRRDYHWLEMISSDITSSESSDYSDED*
BS08791.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mkrn1-PC | 386 | CG7184-PC | 1..386 | 1..386 | 2092 | 100 | Plus |
| Mkrn1-PB | 386 | CG7184-PB | 1..386 | 1..386 | 2092 | 100 | Plus |
| Mkrn1-PA | 386 | CG7184-PA | 1..386 | 1..386 | 2092 | 100 | Plus |
| CG5347-PA | 285 | CG5347-PA | 1..268 | 14..322 | 901 | 56.6 | Plus |
| CG12477-PA | 265 | CG12477-PA | 91..263 | 205..384 | 544 | 54.4 | Plus |
