Clone Sequence Records
BS08795.3prime Sequence
936 bp (815 high quality bases) assembled on 2006-01-11
> BS08795.3prime
ATGGTCTAGAAAGCTTCTAAGCGGAGCTAAAGCTTTCGTAGACGTTGGCC
CCCAGCGTCTTTGTCTTCTCGGCGACCACGTAGAAGGTTAGCAGTTGGGT
GGGCAGATTGTGGGGTCGCGAAGTGGTATCGAAGCCTCTCGAGGTGAGAC
CACTGATGATAGGAATGAGCTTTGCCAACGCCAACAGCACTCGGTTGATG
TTCAGCAAGTTATTGTTCTCCAGACCGTTTTGGCTCTTCGAGGTGCTGGC
GCCTAAGCTTCCTGCCTGGTTAAACTTGACGCTCTGTTCTTGCTGCGTTT
GGACTTTAGCTTGTGGCAGATGCTGCAAAGTTTCGCCCATGCTTTCGGCG
ATGGCATCGCAGGCCAGCACAAAACCACGGCTTACATTGTGCGAGCACAC
GCCAACGGCATCCTCGCTCTCCAACAGATCCAGCGTCTCGTTGACCATCT
TTTGCAGCAGCGGCGAATGACTGGGATTCTGGCTGGGCAGCAGATACTTG
CTCATTCGCGAGTTGGGATCCCGACGAGTGTCCGCATTGATGGCCATTTG
CAGTGACCAAAACAGTTGCTCCAGGTCGCTAAGGGAAAGCTGTTCGGAGA
GCGGTATGGTCTTGGTGACTGCGATGACCTGGGTGCGAATGTAACGGGCT
AAGTCCCGGATGCCCGAATCCGTGATAAAGTGTCGGATGAGGGAGAGATA
CTGCTGCTTTAGCTCGTCGGTGACTTGTTTTTGTTCCGTCATGATGTCCC
GATAGATGTAGCCACCGAGAAGATTTAGCTGGACCCTCAACGCAATAACC
AGCATGGAGGAGGCGTAGACATAGGTTGCCAGTCTTGTGAATGCCACAAT
TTTCATGTCCTCCCAAAGTTTCAACTTGTTCTTGGGATTCTGGCGCAGCT
GCTCGAGCAGCTCGTCCGTGCTGCACTCCCTCAAAA
BS08795.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6859-PA | 1158 | CG6859-RA | 242..1158 | 933..17 | 4560 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex3-RB | 1906 | CG6859-RB | 550..1467 | 933..16 | 4575 | 99.9 | Minus |
| Pex3-RA | 1559 | CG6859-RA | 536..1453 | 933..16 | 4575 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:29:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15145023..15145940 | 933..16 | 4575 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:29:41 has no hits.
BS08795.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:24 Download gff for
BS08795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6859-PA | 243..1158 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:27 Download gff for
BS08795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6859-PA | 243..1158 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:36:42 Download gff for
BS08795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex3-RA | 537..1453 | 16..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:09:09 Download gff for
BS08795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex3-RA | 537..1453 | 16..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:09:09 Download gff for
BS08795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15145024..15145940 | 16..932 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:36:42 Download gff for
BS08795.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15138124..15139040 | 16..932 | 99 | | Minus |
BS08795.5prime Sequence
936 bp (840 high quality bases) assembled on 2006-01-11
> BS08795.5prime
GAAGTTATCAGTCGACATGCTGTCGCGCCTGCAGGACTTCTTGTCACGCC
ACCGGCGAAAGTTCATAGTGACCGGCGTTCTGGTGGGCGGTACCATCTTT
GCGGCACGTTATGCACAACGGCGATTCGTGGAGTTCCAGGAGAAACAGGC
CAGGGAATTCTTCGAGAGAACGCGGCGCACGACCCACTTTGAGTCGACGG
AGAAGACGTGTAACCAGGTGATCCTAGGCATGGGCGAGGAGATGTGCCAA
GCGGTTCTGAGGGAGTGCAGCACGGACGAGCTGCTCGAGCAGCTGCGCCA
GAATCCCAAGAACAAGTTGGAACTTTGGGAGGACATGAAAATTGTGGCAT
TCACAAGACTGGCAACCTATGTCTACGCCTCCTCCATGCTGGTTATTGCG
TTGAGGGTCCAGCTAAATCTTCTCGGTGGCTACATCTATCGGGACATCAT
GACGGAACAAAAACAAGTCACCGACGAGCTAAAGCAGCAGTATCTCTCCC
TCATCCGACACTTTATCACGGATTCGGGCATCCGGGACTTAGCCCGTTAC
ATTCGCACCCAGGTCATCGCAGTCACCAAGACCATACCGCTCTCCGAACA
GCTTTCCCTTAGCGACCTGGAGCAACTGTTTTGGTCACTGCAAATGGCCA
TCAATGCGGACACTCGTCGGGATCCCAACTCGCGAATGAGCAAGTATCTG
CTGCCCAGCCAGAATCCCAGTCATTCGCCGCTGCTGCAAAAGATGGTCAA
CGAGACGCTGGATCTGTTGGAGAGCGAGGATGCCGTTGGCGTGTGCTCGC
ACAATGTAAGCCGTGGTTTTGTGCTGGCCTGCGATGCCATCGCCGAAAGC
ATGGGCGAAACTTTGCAGCATCTGCCACAAGCTAAAGTCCAAACGCAGCA
AGAACAGAGCGTCAAGTTTAACCAGGCAGGAAGCCT
BS08795.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6859-PA | 1158 | CG6859-RA | 1..918 | 17..934 | 4590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex3-RB | 1906 | CG6859-RB | 307..1226 | 15..934 | 4600 | 100 | Plus |
| Pex3-RA | 1559 | CG6859-RA | 293..1212 | 15..934 | 4600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15144780..15145699 | 15..934 | 4600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:25:05 has no hits.
BS08795.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:25 Download gff for
BS08795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6859-PA | 1..919 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:29 Download gff for
BS08795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6859-PA | 1..919 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:23:20 Download gff for
BS08795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex3-RA | 286..1213 | 7..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:30:44 Download gff for
BS08795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex3-RA | 286..1213 | 7..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:30:44 Download gff for
BS08795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15144773..15145700 | 7..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:23:20 Download gff for
BS08795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15137873..15138800 | 7..936 | 99 | | Plus |
BS08795.complete Sequence
1190 bp (1190 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636268
> BS08795.complete
GAAGTTATCAGTCGACATGCTGTCGCGCCTGCAGGACTTCTTGTCACGCC
ACCGGCGAAAGTTCATAGTGACCGGCGTTCTGGTGGGCGGTACCATCTTT
GCGGCACGTTATGCACAACGGCGATTCGTGGAGTTCCAGGAGAAACAGGC
CAGGGAATTCTTCGAGAGAACGCGGCGCACGACCCACTTTGAGTCGACGG
AGAAGACGTGTAACCAGGTGATCCTAGGCATGGGCGAGGAGATGTGCCAA
GCGGTTCTGAGGGAGTGCAGCACGGACGAGCTGCTCGAGCAGCTGCGCCA
GAATCCCAAGAACAAGTTGGAACTTTGGGAGGACATGAAAATTGTGGCAT
TCACAAGACTGGCAACCTATGTCTACGCCTCCTCCATGCTGGTTATTGCG
TTGAGGGTCCAGCTAAATCTTCTCGGTGGCTACATCTATCGGGACATCAT
GACGGAACAAAAACAAGTCACCGACGAGCTAAAGCAGCAGTATCTCTCCC
TCATCCGACACTTTATCACGGATTCGGGCATCCGGGACTTAGCCCGTTAC
ATTCGCACCCAGGTCATCGCAGTCACCAAGACCATACCGCTCTCCGAACA
GCTTTCCCTTAGCGACCTGGAGCAACTGTTTTGGTCACTGCAAATGGCCA
TCAATGCGGACACTCGTCGGGATCCCAACTCGCGAATGAGCAAGTATCTG
CTGCCCAGCCAGAATCCCAGTCATTCGCCGCTGCTGCAAAAGATGGTCAA
CGAGACGCTGGATCTGTTGGAGAGCGAGGATGCCGTTGGCGTGTGCTCGC
ACAATGTAAGCCGTGGTTTTGTGCTGGCCTGCGATGCCATCGCCGAAAGC
ATGGGCGAAACTTTGCAGCATCTGCCACAAGCTAAAGTCCAAACGCAGCA
AGAACAGAGCGTCAAGTTTAACCAGGCAGGAAGCTTAGGCGCCAGCACCT
CGAAGAGCCAAAACGGTCTGGAGAACAATAACTTGCTGAACATCAACCGA
GTGCTGTTGGCGTTGGCAAAGCTCATTCCTATCATCAGTGGTCTCACCTC
GAGAGGCTTCGATACCACTTCGCGACCCCACAATCTGCCCACCCAACTGC
TAACCTTCTACGTGGTCGCCGAGAAGACAAAGACGCTGGGGGCCAACGTC
TACGAAAGCTTTAGCTCCGCTTAGAAGCTTTCTAGACCAT
BS08795.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex3-RB | 1158 | CG6859-PB | 1..1158 | 17..1174 | 5790 | 100 | Plus |
| Pex3-RA | 1158 | CG6859-PA | 1..1158 | 17..1174 | 5790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex3-RB | 1906 | CG6859-RB | 307..1467 | 15..1175 | 5805 | 100 | Plus |
| Pex3-RA | 1559 | CG6859-RA | 293..1453 | 15..1175 | 5805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15144780..15145940 | 15..1175 | 5805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:24:17 has no hits.
BS08795.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:04 Download gff for
BS08795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6859-RA | 1..1158 | 17..1174 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:14 Download gff for
BS08795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6859-RA | 297..1464 | 7..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:05 Download gff for
BS08795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex3-RA | 295..1452 | 17..1174 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:04 Download gff for
BS08795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6859-RA | 297..1464 | 7..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:49 Download gff for
BS08795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex3-RA | 295..1452 | 17..1174 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:49 Download gff for
BS08795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15144782..15145939 | 17..1174 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:05 Download gff for
BS08795.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15137882..15139039 | 17..1174 | 100 | | Plus |
BS08795.pep Sequence
Translation from 16 to 1173
> BS08795.pep
MLSRLQDFLSRHRRKFIVTGVLVGGTIFAARYAQRRFVEFQEKQAREFFE
RTRRTTHFESTEKTCNQVILGMGEEMCQAVLRECSTDELLEQLRQNPKNK
LELWEDMKIVAFTRLATYVYASSMLVIALRVQLNLLGGYIYRDIMTEQKQ
VTDELKQQYLSLIRHFITDSGIRDLARYIRTQVIAVTKTIPLSEQLSLSD
LEQLFWSLQMAINADTRRDPNSRMSKYLLPSQNPSHSPLLQKMVNETLDL
LESEDAVGVCSHNVSRGFVLACDAIAESMGETLQHLPQAKVQTQQEQSVK
FNQAGSLGASTSKSQNGLENNNLLNINRVLLALAKLIPIISGLTSRGFDT
TSRPHNLPTQLLTFYVVAEKTKTLGANVYESFSSA*
BS08795.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex3-PB | 385 | CG6859-PB | 1..385 | 1..385 | 1933 | 100 | Plus |
| Pex3-PA | 385 | CG6859-PA | 1..385 | 1..385 | 1933 | 100 | Plus |
