Clone Sequence Records
BS08796.3prime Sequence
748 bp (746 high quality bases) assembled on 2006-01-11
> BS08796.3prime
ATGGTCTAGAAAGCTTTTACAGTTCATCTTTTTCTAGCAGGGTGTAGCGA
TGCTTGGATGGGCCAAGTTCCTTGAATTTGGACTCTGGTGGCGATGTACC
CTTGCCAGTGTGTGGGTCAGGTTCAATATCATTTGAGGGATCCGGCCCGT
AATGAAATTCCCTGTGCAGCTTGCCACTGTAGAGATCCTGAAGGAACTGC
TTCAGCTTACCCGGCGAGTACATGTCACTGAAGTGGGGGAACAGATACAT
GTGCTTGAACGAGTCGATGGCAATCAAGGGCAAGTCATCCTCGGATTTAC
CCAGATGGTGCAGAGGATGCGCGAATCGCTTGCCATCGGCGGTCAAAAAG
TTGACGTTCTGTTTCTCATCCAGCAATTGACGCTCAATGATCGACTTGTA
ATCCTTGATAGAATTATGATCGGTTGGGTGGTGGAAGAGAATTAGGAACG
GCAGACCCTCCTCCGTAAGTTCCTCTGCATTCTCAAATGTTATTTCCCGC
ACCAGGGGTACACACTTCTCTTGGACCCAAATTTTGAGCTCATCGAAATT
TTGTAGGCTGCCAGTGTAGGTCTCATCGTTCTCATGAGACAGAGCTACAT
CAGGTCTAAATACTATGATAGGTGTACCTGGTGGATGCATGGCCTGGGCG
GCATCTCCGAAGCCCACGTGGAACTGGCAGTCTTCCTTCAGATTTGTCGC
CACCTTGCGGAATATGTCGTACTCTGGCTGGTCCCTACGATCGAAGTA
BS08796.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9911-PD | 1239 | CG9911-RD | 508..1239 | 748..17 | 3660 | 100 | Minus |
| CG9911-PB | 1239 | CG9911-RB | 508..1239 | 748..17 | 3660 | 100 | Minus |
| CG9911-PA | 1239 | CG9911-RA | 508..1239 | 748..17 | 3660 | 100 | Minus |
| CG9911-PC | 1128 | CG9911-RC | 397..1128 | 748..17 | 3660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9911-RC | 1364 | CG9911-RC | 590..1321 | 748..17 | 3660 | 100 | Minus |
| CG9911-RA | 1503 | CG9911-RA | 729..1460 | 748..17 | 3660 | 100 | Minus |
| CG9911-RB | 1426 | CG9911-RB | 652..1383 | 748..17 | 3660 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:14:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16294388..16294657 | 361..630 | 1350 | 100 | Plus |
| X | 23542271 | X | 16294109..16294313 | 156..360 | 1010 | 99.5 | Plus |
| X | 23542271 | X | 16293896..16294043 | 17..164 | 740 | 100 | Plus |
| X | 23542271 | X | 16294723..16294845 | 626..748 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:14:43 has no hits.
BS08796.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:26 Download gff for
BS08796.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-PB | 509..1239 | 17..747 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:30 Download gff for
BS08796.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-PC | 398..1128 | 17..747 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:28:41 Download gff for
BS08796.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-RB | 653..1383 | 17..747 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:16 Download gff for
BS08796.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-RB | 653..1383 | 17..747 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:16 Download gff for
BS08796.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16293896..16294040 | 17..161 | 100 | <- | Plus |
| X | 16294115..16294313 | 162..360 | 100 | <- | Plus |
| X | 16294388..16294654 | 361..627 | 100 | <- | Plus |
| X | 16294725..16294844 | 628..747 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:28:41 Download gff for
BS08796.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16187929..16188073 | 17..161 | 100 | <- | Plus |
| arm_X | 16188148..16188346 | 162..360 | 100 | <- | Plus |
| arm_X | 16188421..16188687 | 361..627 | 100 | <- | Plus |
| arm_X | 16188758..16188877 | 628..747 | 100 | | Plus |
BS08796.5prime Sequence
838 bp (734 high quality bases) assembled on 2006-01-11
> BS08796.5prime
GAAGTTATCAGTCGACATGTTTGGAGCCAGAATCGGAATCGGAAAGCTTG
GGCCGTGTGTGGCCCTAGTTGCGATTCTACAGCTACTCCAGTACACACAG
CCGGCCGATGCCGCCGGAGCCGTGCCCATGACCAGTGATAATATCGATAT
GACCCTAGCGTCTAATGAATTGGTTTTCCTTAATTTTTATGCGGAGTGGT
GTCGGTTTAGTAATATTTTAGCACCTATATTCGCGGAAGCTGCAGATAAG
ATTAAAGAGGAGTTTCCAGAGGCTGGAAAAGTGGTGCTAGGCAAGGTCGA
TTGCGACAAGGAAACGGCCATCGCGTCCCGTTTCCACATAAACAAGTATC
CAACATTGAAAATTGTACGCAATGGGCAGCTCAGCAAGCGCGAATACCGA
GGACAGCGTTCAGCCGAAGCGTTCCTCGAGTTCGTCAAGAAGCAGCTGGA
GGATCCCATTCAGGAGTTCAAATCCCTGAAGGATCTGGAGAACCTGGACT
CGAAGAAGCGCCTCATTCTGGGCTACTTCGATCGTAGGGACCAGCCAGAG
TACGACATATTCCGCAAGGTGGCGACAAATCTGAAGGAAGACTGCCAGTT
CCACGTGGGCTTCGGAGATGCCGCCCAGGCCATGCATCCACCAGGTACAC
CTATCATAGTATTTAGACCTGATGTAGCTCTGTCTCATGAGAACGATGAG
ACCTACACTGGCAGCCTACAAAATTTCGATGAGCTCAAAATTTGGGTCCA
AGAGAAGTGTGTACCCCTGGTGCGGGAAATAACATTTGAGAATGCAGAGG
AACTTACGGAGGAGGGTCTGCCGTTCCTAATTCTCTTC
BS08796.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9911-PD | 1239 | CG9911-RD | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG9911-PB | 1239 | CG9911-RB | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG9911-PA | 1239 | CG9911-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
| CG9911-PC | 1128 | CG9911-RC | 1..711 | 128..838 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9911-RA | 1503 | CG9911-RA | 222..1043 | 17..838 | 4110 | 100 | Plus |
| CG9911-RB | 1426 | CG9911-RB | 145..966 | 17..838 | 4110 | 100 | Plus |
| CG9911-RD | 1477 | CG9911-RD | 196..1017 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16294723..16295120 | 646..249 | 1990 | 100 | Minus |
| X | 23542271 | X | 16294461..16294657 | 838..642 | 985 | 100 | Minus |
| X | 23542271 | X | 16295223..16295316 | 250..157 | 470 | 100 | Minus |
| X | 23542271 | X | 16296047..16296132 | 158..73 | 430 | 100 | Minus |
| X | 23542271 | X | 16296310..16296366 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:47:13 has no hits.
BS08796.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:27 Download gff for
BS08796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-PB | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:31 Download gff for
BS08796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-PA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:23:13 Download gff for
BS08796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-RD | 191..1017 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:52:34 Download gff for
BS08796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-RD | 191..1017 | 9..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:52:34 Download gff for
BS08796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16294461..16294654 | 645..838 | 100 | <- | Minus |
| X | 16294725..16295118 | 251..644 | 100 | <- | Minus |
| X | 16295223..16295314 | 159..250 | 100 | <- | Minus |
| X | 16296047..16296131 | 74..158 | 100 | <- | Minus |
| X | 16296310..16296371 | 9..73 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:23:13 Download gff for
BS08796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16188494..16188687 | 645..838 | 100 | <- | Minus |
| arm_X | 16188758..16189151 | 251..644 | 100 | <- | Minus |
| arm_X | 16189256..16189347 | 159..250 | 100 | <- | Minus |
| arm_X | 16190080..16190164 | 74..158 | 100 | <- | Minus |
| arm_X | 16190343..16190404 | 9..73 | 93 | | Minus |
BS08796.complete Sequence
1271 bp (1271 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636269
> BS08796.complete
GAAGTTATCAGTCGACATGTTTGGAGCCAGAATCGGAATCGGAAAGCTTG
GGCCGTGTGTGGCCCTAGTTGCGATTCTACAGCTACTCCAGTACACACAG
CCGGCCGATGCCGCCGGAGCCGTGCCCATGACCAGTGATAATATCGATAT
GACCCTAGCGTCTAATGAATTGGTTTTCCTTAATTTTTATGCGGAGTGGT
GTCGGTTTAGTAATATTTTAGCACCTATATTCGCGGAAGCTGCAGATAAG
ATTAAAGAGGAGTTTCCAGAGGCTGGAAAAGTGGTGCTAGGCAAGGTCGA
TTGCGACAAGGAAACGGCCATCGCGTCCCGTTTCCACATAAACAAGTATC
CAACATTGAAAATTGTACGCAATGGGCAGCTCAGCAAGCGCGAATACCGA
GGACAGCGTTCAGCCGAAGCGTTCCTCGAGTTCGTCAAGAAGCAGCTGGA
GGATCCCATTCAGGAGTTCAAATCCCTGAAGGATCTGGAGAACCTGGACT
CGAAGAAGCGCCTCATTCTGGGCTACTTCGATCGTAGGGACCAGCCAGAG
TACGACATATTCCGCAAGGTGGCGACAAATCTGAAGGAAGACTGCCAGTT
CCACGTGGGCTTCGGAGATGCCGCCCAGGCCATGCATCCACCAGGTACAC
CTATCATAGTATTTAGACCTGATGTAGCTCTGTCTCATGAGAACGATGAG
ACCTACACTGGCAGCCTACAAAATTTCGATGAGCTCAAAATTTGGGTCCA
AGAGAAGTGTGTACCCCTGGTGCGGGAAATAACATTTGAGAATGCAGAGG
AACTTACGGAGGAGGGTCTGCCGTTCCTAATTCTCTTCCACCACCCAACC
GATCATAATTCTATCAAGGATTACAAGTCGATCATTGAGCGTCAATTGCT
GGATGAGAAACAGAACGTCAACTTTTTGACCGCCGATGGCAAGCGATTCG
CGCATCCTCTGCACCATCTGGGTAAATCCGAGGATGACTTGCCCTTGATT
GCCATCGACTCGTTCAAGCACATGTATCTGTTCCCCCACTTCAGTGACAT
GTACTCGCCGGGTAAGCTGAAGCAGTTCCTTCAGGATCTCTACAGTGGCA
AGCTGCACAGGGAATTTCATTACGGGCCGGATCCCTCAAATGATATTGAA
CCTGACCCACACACTGGCAAGGGTACATCGCCACCAGAGTCCAAATTCAA
GGAACTTGGCCCATCCAAGCATCGCTACACCCTGCTAGAAAAAGATGAAC
TGTAAAAGCTTTCTAGACCAT
BS08796.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9911-RA | 1239 | CG9911-PA | 1..1239 | 17..1255 | 6195 | 100 | Plus |
| CG9911-RB | 1239 | CG9911-PB | 1..1239 | 17..1255 | 6195 | 100 | Plus |
| CG9911-RD | 1239 | CG9911-PD | 1..1239 | 17..1255 | 6195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9911-RA | 1503 | CG9911-RA | 222..1460 | 17..1255 | 6195 | 100 | Plus |
| CG9911-RB | 1426 | CG9911-RB | 145..1383 | 17..1255 | 6195 | 100 | Plus |
| CG9911-RD | 1477 | CG9911-RD | 196..1434 | 17..1255 | 6195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16294723..16295120 | 646..249 | 1990 | 100 | Minus |
| X | 23542271 | X | 16294388..16294657 | 911..642 | 1350 | 100 | Minus |
| X | 23542271 | X | 16294109..16294313 | 1116..912 | 1010 | 99.5 | Minus |
| X | 23542271 | X | 16293896..16294043 | 1255..1108 | 740 | 100 | Minus |
| X | 23542271 | X | 16295223..16295316 | 250..157 | 470 | 100 | Minus |
| X | 23542271 | X | 16296047..16296132 | 158..73 | 430 | 100 | Minus |
| X | 23542271 | X | 16296310..16296366 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:37:55 has no hits.
BS08796.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:13 Download gff for
BS08796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-RA | 1..1239 | 17..1255 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:26 Download gff for
BS08796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-RA | 192..1435 | 9..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:28:27 Download gff for
BS08796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-RD | 202..1432 | 23..1253 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:13 Download gff for
BS08796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-RA | 192..1435 | 9..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:35:19 Download gff for
BS08796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9911-RD | 202..1432 | 23..1253 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:35:19 Download gff for
BS08796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16293898..16294040 | 1111..1253 | 100 | <- | Minus |
| X | 16294115..16294313 | 912..1110 | 100 | <- | Minus |
| X | 16294388..16294654 | 645..911 | 100 | <- | Minus |
| X | 16294725..16295118 | 251..644 | 100 | <- | Minus |
| X | 16295223..16295314 | 159..250 | 100 | <- | Minus |
| X | 16296047..16296131 | 74..158 | 100 | <- | Minus |
| X | 16296310..16296360 | 23..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:28:27 Download gff for
BS08796.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16188421..16188687 | 645..911 | 100 | <- | Minus |
| arm_X | 16187931..16188073 | 1111..1253 | 100 | <- | Minus |
| arm_X | 16188148..16188346 | 912..1110 | 100 | <- | Minus |
| arm_X | 16188758..16189151 | 251..644 | 100 | <- | Minus |
| arm_X | 16189256..16189347 | 159..250 | 100 | <- | Minus |
| arm_X | 16190080..16190164 | 74..158 | 100 | <- | Minus |
| arm_X | 16190343..16190393 | 23..73 | 100 | | Minus |
BS08796.pep Sequence
Translation from 16 to 1254
> BS08796.pep
MFGARIGIGKLGPCVALVAILQLLQYTQPADAAGAVPMTSDNIDMTLASN
ELVFLNFYAEWCRFSNILAPIFAEAADKIKEEFPEAGKVVLGKVDCDKET
AIASRFHINKYPTLKIVRNGQLSKREYRGQRSAEAFLEFVKKQLEDPIQE
FKSLKDLENLDSKKRLILGYFDRRDQPEYDIFRKVATNLKEDCQFHVGFG
DAAQAMHPPGTPIIVFRPDVALSHENDETYTGSLQNFDELKIWVQEKCVP
LVREITFENAEELTEEGLPFLILFHHPTDHNSIKDYKSIIERQLLDEKQN
VNFLTADGKRFAHPLHHLGKSEDDLPLIAIDSFKHMYLFPHFSDMYSPGK
LKQFLQDLYSGKLHREFHYGPDPSNDIEPDPHTGKGTSPPESKFKELGPS
KHRYTLLEKDEL*
BS08796.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9911-PA | 412 | CG9911-PA | 1..412 | 1..412 | 2180 | 100 | Plus |
| CG9911-PB | 412 | CG9911-PB | 1..412 | 1..412 | 2180 | 100 | Plus |
| CG9911-PD | 412 | CG9911-PD | 1..412 | 1..412 | 2180 | 100 | Plus |
| CG9911-PC | 375 | CG9911-PC | 1..375 | 38..412 | 1994 | 100 | Plus |
| CG10029-PB | 410 | CG10029-PB | 4..410 | 8..412 | 1040 | 49.9 | Plus |
