Clone BS08802 Report

Search the DGRC for BS08802

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptRnrS-RA
Protein status:BS08802.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08802.3prime Sequence

886 bp (785 high quality bases) assembled on 2006-01-18

> BS08802.3prime
ATGGTCTAGAAAGCTTCTAGAAATCCGCGTCCAGGGTGAACACGTTGTCC
AGGGGGTTGCTGACCACTCCCATGCGCTGGTACTCCCCCACCTTCTTCTC
AAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAAGG
GGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACGG
TCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCAAT
CAAATTGACGGGCAGGGCATCGGTAAGGAACTCCTGCTCAATGGCCACCG
CGTCGCGGATGATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGG
TGTTGGAACATCAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGA
GATAAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCTCGCTTCTTAA
GCCAGAAAATGGAAGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCG
GCAAAGGCGATGATGCGTTCCCCGAAGTTGGCCGATTTGGAGGAGATCCA
GGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAG
CGTTAAACAGGTACTCTCGCTGGTGTGGATCACGGATGTAAGTGTCGATC
AAAACACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATCTGAAAGCC
GTAGAAGCAACGTGCCTCCGTGATCTGCACCTCCTGACTGAAGCGCTCCA
CCAGGTTCTCGTTTACGATGCCGTCGGAGGCGGCGAAGAAGGCAAGCACG
TGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAATCAGTAAG
GTCCTTGGACAAATCCACCTCCTCGACAGTCCAGAA

BS08802.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8975-PA 1182 RnrS-RA 313..1182 886..17 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
RnrS-RA 1593 CG8975-RA 440..1309 886..17 4350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11983429..11984298 17..886 4350 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:59:27 has no hits.

BS08802.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:29 Download gff for BS08802.3prime
Subject Subject Range Query Range Percent Splice Strand
RnrS-PA 315..1182 17..884 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:32 Download gff for BS08802.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8975-PA 315..1182 17..884 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:17:40 Download gff for BS08802.3prime
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 440..1313 12..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:10:11 Download gff for BS08802.3prime
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 440..1313 12..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:10:11 Download gff for BS08802.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11983425..11984298 12..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:17:40 Download gff for BS08802.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7870930..7871803 12..886 99   Plus

BS08802.5prime Sequence

927 bp (786 high quality bases) assembled on 2006-01-18

> BS08802.5prime
GAAGTTATCAGTCGACATGGCGTCCAAGGAAAACATTGCTGACAACATGG
AGAAGTTCTCGCTTAAGAGCCCGAGCAAGAAGATTCTGACGGATAGCACC
AACAACGTTCGCAAGATGTCCATTGGACACGAGGCAAACGGACAGTTGGC
CAAGGAGTCCTCCACCGTGAATGGCATCGGCAAGTCTGCCAATTCCCTCA
TGGAGAAGTCCGTAACCCCCTTCGACCCGTCGCTGGAGCCCCTTCTGCGC
GAGAATCCCCGACGCTTCGTCATCTTTCCCATCCAGTACCACGACATCTG
GCAGATGTACAAGAAGGCTGAGGCTTCTTTCTGGACTGTCGAGGAGGTGG
ATTTGTCCAAGGACCTTACTGATTGGCACCGCCTGAAGGACGACGAGCGC
CATTTCATCTCGCACGTGCTTGCCTTCTTCGCCGCCTCCGACGGCATCGT
AAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGG
CACGTTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAG
ATGTACAGTGTTTTGATCGACACTTACATCCGTGATCCACACCAGCGAGA
GTACCTGTTTAACGCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAG
ACTGGGCCCTGTCCTGGATCTCCTCCAAATCGGCCAACTTCGGGGAACGC
ATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGC
TTCCATTTTCTGGCTTAAGAAGCGAGGTCTGATGCCTGGATTGACCTTCT
CCNACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG
CTGATGTTTCCACACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGA
GATCATCCGCGACGCGGTGGCCATTGA

BS08802.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8975-PA 1182 RnrS-RA 1..911 17..927 4486 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
RnrS-RA 1593 CG8975-RA 128..1038 17..927 4514 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11983700..11984312 927..315 3024 99.5 Minus
2R 25286936 2R 11984818..11985069 317..66 1260 100 Minus
2R 25286936 2R 11985216..11985266 67..17 255 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:32:21 has no hits.

BS08802.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:31 Download gff for BS08802.5prime
Subject Subject Range Query Range Percent Splice Strand
RnrS-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:34 Download gff for BS08802.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8975-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:34:30 Download gff for BS08802.5prime
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 121..1037 7..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:02:43 Download gff for BS08802.5prime
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 121..1037 7..926 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:02:43 Download gff for BS08802.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11983701..11984310 317..926 99 <- Minus
2R 11984819..11985067 68..316 100 <- Minus
2R 11985216..11985273 7..67 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:34:30 Download gff for BS08802.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7872324..7872572 68..316 100 <- Minus
arm_2R 7871206..7871815 317..926 99 <- Minus
arm_2R 7872721..7872778 7..67 93   Minus

BS08802.complete Sequence

1214 bp (1214 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636270

> BS08802.complete
GAAGTTATCAGTCGACATGGCGTCCAAGGAAAACATTGCTGACAACATGG
AGAAGTTCTCGCTTAAGAGCCCGAGCAAGAAGATTCTGACGGATAGCACC
AACAACGTTCGCAAGATGTCCATTGGACACGAGGCAAACGGACAGTTGGC
CAAGGAGTCCTCCACCGTGAATGGCATCGGCAAGTCTGCCAATTCCCTCA
TGGAGAAGTCCGTAACCCCCTTCGACCCGTCGCTGGAGCCCCTTCTGCGC
GAGAATCCCCGACGCTTCGTCATCTTTCCCATCCAGTACCACGACATCTG
GCAGATGTACAAGAAGGCTGAGGCTTCTTTCTGGACTGTCGAGGAGGTGG
ATTTGTCCAAGGACCTTACTGATTGGCACCGCCTGAAGGACGACGAGCGC
CATTTCATCTCGCACGTGCTTGCCTTCTTCGCCGCCTCCGACGGCATCGT
AAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGG
CACGTTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAG
ATGTACAGTGTTTTGATCGACACTTACATCCGTGATCCACACCAGCGAGA
GTACCTGTTTAACGCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAG
ACTGGGCCCTGTCCTGGATCTCCTCCAAATCGGCCAACTTCGGGGAACGC
ATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGC
TTCCATTTTCTGGCTTAAGAAGCGAGGTCTGATGCCTGGATTGACCTTCT
CCAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG
CTGATGTTCCAACACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGA
GATCATCCGCGACGCGGTGGCCATTGAGCAGGAGTTCCTTACCGATGCCC
TGCCCGTCAATTTGATTGGCATGAATTGCGACCTGATGTCCCAGTACATT
GAGTTCGTAGCGGACCGTTTGCTCGTGGAGTTGGGCGTTGGAAAGATCTA
CAACACCAAAAACCCCTTTAACTTCATGGAGATGATATCGCTGGATGGAA
AGACCAACTTTTTTGAGAAGAAGGTGGGGGAGTACCAGCGCATGGGAGTG
GTCAGCAACCCCCTGGACAACGTGTTCACCCTGGACGCGGATTTCTAGAA
GCTTTCTAGACCAT

BS08802.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
RnrS-RA 1182 CG8975-PA 1..1182 17..1198 5910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
RnrS-RA 1593 CG8975-RA 128..1309 17..1198 5910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11983429..11984312 1198..315 4420 100 Minus
2R 25286936 2R 11984818..11985069 317..66 1260 100 Minus
2R 25286936 2R 11985216..11985266 67..17 255 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:00:14 has no hits.

BS08802.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:14 Download gff for BS08802.complete
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 1..1182 17..1198 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:05 Download gff for BS08802.complete
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 171..1363 7..1203 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:58:52 Download gff for BS08802.complete
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 128..1309 17..1198 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:15 Download gff for BS08802.complete
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 171..1363 7..1203 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:20 Download gff for BS08802.complete
Subject Subject Range Query Range Percent Splice Strand
RnrS-RA 128..1309 17..1198 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:20 Download gff for BS08802.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11985216..11985266 17..67 100   Minus
2R 11983429..11984310 317..1198 100 <- Minus
2R 11984819..11985067 68..316 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:58:52 Download gff for BS08802.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7870934..7871815 317..1198 100 <- Minus
arm_2R 7872324..7872572 68..316 100 <- Minus
arm_2R 7872721..7872771 17..67 100   Minus

BS08802.pep Sequence

Translation from 16 to 1197

> BS08802.pep
MASKENIADNMEKFSLKSPSKKILTDSTNNVRKMSIGHEANGQLAKESST
VNGIGKSANSLMEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKK
AEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLV
ERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNA
IETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWL
KKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLVQRPKRERIIEIIRDA
VAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYNTKNP
FNFMEMISLDGKTNFFEKKVGEYQRMGVVSNPLDNVFTLDADF*

BS08802.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
RnrS-PA 393 CG8975-PA 1..393 1..393 2032 100 Plus