Clone Sequence Records
BS08802.3prime Sequence
886 bp (785 high quality bases) assembled on 2006-01-18
> BS08802.3prime
ATGGTCTAGAAAGCTTCTAGAAATCCGCGTCCAGGGTGAACACGTTGTCC
AGGGGGTTGCTGACCACTCCCATGCGCTGGTACTCCCCCACCTTCTTCTC
AAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAAGG
GGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACGG
TCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCAAT
CAAATTGACGGGCAGGGCATCGGTAAGGAACTCCTGCTCAATGGCCACCG
CGTCGCGGATGATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGG
TGTTGGAACATCAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGA
GATAAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCTCGCTTCTTAA
GCCAGAAAATGGAAGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCG
GCAAAGGCGATGATGCGTTCCCCGAAGTTGGCCGATTTGGAGGAGATCCA
GGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAG
CGTTAAACAGGTACTCTCGCTGGTGTGGATCACGGATGTAAGTGTCGATC
AAAACACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATCTGAAAGCC
GTAGAAGCAACGTGCCTCCGTGATCTGCACCTCCTGACTGAAGCGCTCCA
CCAGGTTCTCGTTTACGATGCCGTCGGAGGCGGCGAAGAAGGCAAGCACG
TGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAATCAGTAAG
GTCCTTGGACAAATCCACCTCCTCGACAGTCCAGAA
BS08802.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8975-PA | 1182 | RnrS-RA | 313..1182 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RnrS-RA | 1593 | CG8975-RA | 440..1309 | 886..17 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:59:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11983429..11984298 | 17..886 | 4350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:59:27 has no hits.
BS08802.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:29 Download gff for
BS08802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnrS-PA | 315..1182 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:32 Download gff for
BS08802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8975-PA | 315..1182 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:17:40 Download gff for
BS08802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnrS-RA | 440..1313 | 12..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:10:11 Download gff for
BS08802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnrS-RA | 440..1313 | 12..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:10:11 Download gff for
BS08802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11983425..11984298 | 12..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:17:40 Download gff for
BS08802.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7870930..7871803 | 12..886 | 99 | | Plus |
BS08802.5prime Sequence
927 bp (786 high quality bases) assembled on 2006-01-18
> BS08802.5prime
GAAGTTATCAGTCGACATGGCGTCCAAGGAAAACATTGCTGACAACATGG
AGAAGTTCTCGCTTAAGAGCCCGAGCAAGAAGATTCTGACGGATAGCACC
AACAACGTTCGCAAGATGTCCATTGGACACGAGGCAAACGGACAGTTGGC
CAAGGAGTCCTCCACCGTGAATGGCATCGGCAAGTCTGCCAATTCCCTCA
TGGAGAAGTCCGTAACCCCCTTCGACCCGTCGCTGGAGCCCCTTCTGCGC
GAGAATCCCCGACGCTTCGTCATCTTTCCCATCCAGTACCACGACATCTG
GCAGATGTACAAGAAGGCTGAGGCTTCTTTCTGGACTGTCGAGGAGGTGG
ATTTGTCCAAGGACCTTACTGATTGGCACCGCCTGAAGGACGACGAGCGC
CATTTCATCTCGCACGTGCTTGCCTTCTTCGCCGCCTCCGACGGCATCGT
AAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGG
CACGTTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAG
ATGTACAGTGTTTTGATCGACACTTACATCCGTGATCCACACCAGCGAGA
GTACCTGTTTAACGCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAG
ACTGGGCCCTGTCCTGGATCTCCTCCAAATCGGCCAACTTCGGGGAACGC
ATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGC
TTCCATTTTCTGGCTTAAGAAGCGAGGTCTGATGCCTGGATTGACCTTCT
CCNACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG
CTGATGTTTCCACACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGA
GATCATCCGCGACGCGGTGGCCATTGA
BS08802.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8975-PA | 1182 | RnrS-RA | 1..911 | 17..927 | 4486 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RnrS-RA | 1593 | CG8975-RA | 128..1038 | 17..927 | 4514 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11983700..11984312 | 927..315 | 3024 | 99.5 | Minus |
2R | 25286936 | 2R | 11984818..11985069 | 317..66 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 11985216..11985266 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:32:21 has no hits.
BS08802.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:31 Download gff for
BS08802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnrS-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:34 Download gff for
BS08802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8975-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:34:30 Download gff for
BS08802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnrS-RA | 121..1037 | 7..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:02:43 Download gff for
BS08802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnrS-RA | 121..1037 | 7..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:02:43 Download gff for
BS08802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11983701..11984310 | 317..926 | 99 | <- | Minus |
2R | 11984819..11985067 | 68..316 | 100 | <- | Minus |
2R | 11985216..11985273 | 7..67 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:34:30 Download gff for
BS08802.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7872324..7872572 | 68..316 | 100 | <- | Minus |
arm_2R | 7871206..7871815 | 317..926 | 99 | <- | Minus |
arm_2R | 7872721..7872778 | 7..67 | 93 | | Minus |
BS08802.complete Sequence
1214 bp (1214 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636270
> BS08802.complete
GAAGTTATCAGTCGACATGGCGTCCAAGGAAAACATTGCTGACAACATGG
AGAAGTTCTCGCTTAAGAGCCCGAGCAAGAAGATTCTGACGGATAGCACC
AACAACGTTCGCAAGATGTCCATTGGACACGAGGCAAACGGACAGTTGGC
CAAGGAGTCCTCCACCGTGAATGGCATCGGCAAGTCTGCCAATTCCCTCA
TGGAGAAGTCCGTAACCCCCTTCGACCCGTCGCTGGAGCCCCTTCTGCGC
GAGAATCCCCGACGCTTCGTCATCTTTCCCATCCAGTACCACGACATCTG
GCAGATGTACAAGAAGGCTGAGGCTTCTTTCTGGACTGTCGAGGAGGTGG
ATTTGTCCAAGGACCTTACTGATTGGCACCGCCTGAAGGACGACGAGCGC
CATTTCATCTCGCACGTGCTTGCCTTCTTCGCCGCCTCCGACGGCATCGT
AAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGG
CACGTTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAG
ATGTACAGTGTTTTGATCGACACTTACATCCGTGATCCACACCAGCGAGA
GTACCTGTTTAACGCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAG
ACTGGGCCCTGTCCTGGATCTCCTCCAAATCGGCCAACTTCGGGGAACGC
ATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGC
TTCCATTTTCTGGCTTAAGAAGCGAGGTCTGATGCCTGGATTGACCTTCT
CCAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG
CTGATGTTCCAACACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGA
GATCATCCGCGACGCGGTGGCCATTGAGCAGGAGTTCCTTACCGATGCCC
TGCCCGTCAATTTGATTGGCATGAATTGCGACCTGATGTCCCAGTACATT
GAGTTCGTAGCGGACCGTTTGCTCGTGGAGTTGGGCGTTGGAAAGATCTA
CAACACCAAAAACCCCTTTAACTTCATGGAGATGATATCGCTGGATGGAA
AGACCAACTTTTTTGAGAAGAAGGTGGGGGAGTACCAGCGCATGGGAGTG
GTCAGCAACCCCCTGGACAACGTGTTCACCCTGGACGCGGATTTCTAGAA
GCTTTCTAGACCAT
BS08802.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RnrS-RA | 1182 | CG8975-PA | 1..1182 | 17..1198 | 5910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RnrS-RA | 1593 | CG8975-RA | 128..1309 | 17..1198 | 5910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11983429..11984312 | 1198..315 | 4420 | 100 | Minus |
2R | 25286936 | 2R | 11984818..11985069 | 317..66 | 1260 | 100 | Minus |
2R | 25286936 | 2R | 11985216..11985266 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:00:14 has no hits.
BS08802.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:14 Download gff for
BS08802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnrS-RA | 1..1182 | 17..1198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:05 Download gff for
BS08802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnrS-RA | 171..1363 | 7..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:58:52 Download gff for
BS08802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnrS-RA | 128..1309 | 17..1198 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:15 Download gff for
BS08802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnrS-RA | 171..1363 | 7..1203 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:20 Download gff for
BS08802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RnrS-RA | 128..1309 | 17..1198 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:20 Download gff for
BS08802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11985216..11985266 | 17..67 | 100 | | Minus |
2R | 11983429..11984310 | 317..1198 | 100 | <- | Minus |
2R | 11984819..11985067 | 68..316 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:58:52 Download gff for
BS08802.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7870934..7871815 | 317..1198 | 100 | <- | Minus |
arm_2R | 7872324..7872572 | 68..316 | 100 | <- | Minus |
arm_2R | 7872721..7872771 | 17..67 | 100 | | Minus |
BS08802.pep Sequence
Translation from 16 to 1197
> BS08802.pep
MASKENIADNMEKFSLKSPSKKILTDSTNNVRKMSIGHEANGQLAKESST
VNGIGKSANSLMEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKK
AEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLV
ERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNA
IETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWL
KKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLVQRPKRERIIEIIRDA
VAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYNTKNP
FNFMEMISLDGKTNFFEKKVGEYQRMGVVSNPLDNVFTLDADF*
BS08802.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RnrS-PA | 393 | CG8975-PA | 1..393 | 1..393 | 2032 | 100 | Plus |