Clone BS08805 Report

Search the DGRC for BS08805

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG6412-RA
Protein status:BS08805.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08805.3prime Sequence

932 bp (836 high quality bases) assembled on 2006-01-18

> BS08805.3prime
ATGGTCTAGAAAGCTTTTAATTGCTGCTCTGGTGCTGCGAGCGAATGATC
GCCTCCAGGCTGCGTTCCGTGTGCTCTCCGCACTCGAAGCGATGGTAGTC
GACGATCTCGCAGTTGTGCTCCTGCAAAGCCTCGCCCACCGTCTTGTCCG
CATCGAGCAGATACTCCTGGTGAATCAGGCACGTCTCATCGTCCTTGTTC
TCCGCCGGCTTGTCCTTGTCATATTCGCCGATCTTTGTCGGCTTCATGCC
CACGATTTGCTGGCAAATGCTCTTGTGAAACTCAAAGTCCAGCAGGGGGT
GCGTGGATCGGTAGGCTACGATCGCTCCGTACTTGCCCACCTGGGTGATG
CCTTCCGTGGTGCCCACATTGGTGGGTGCGGGATGGGCGTAGCCCACCAG
CTTCAGGTCGTTGTTAGCCTTAAAGCACAATGCGCGCCGGATGGTGGCAT
TCTCCCCGATGGCGCCGATCAGCAGAGCCAGGTGGTCGCCCAACGTGCGT
CCCTCCTCCGTGCGCAAGTTTCTGAGGGCGTCCGCATCAAAGCCAAGCTT
CCACAGATCTCCATCGAAGTCCGTCAAGTCCGTGTATTGCAGACACATGC
AGGCGACGTGGTCAACGAACCGCTTGAAGGTATCGTTCCTGGCTACGAAA
TCCGTCTCGCAATTCAGCTCGACCATGGCGCCCCGGTTTCCGCGGATGAG
CACTCCAATCAGACCATGTGCAGTGGCTCGATCTGCGACCTTGGTGGCCT
TCGACCAGCCGAGGGTCTGGGCCTGCTCGTGCAGCCACTTTTCAGCCAAT
CCGACGTCGTTGTTGTGCTTCTCCAGCGCCTTCTTGCAATTGGCGAAGGT
GTATCCGGTTTTCTTCCTCAGCGCCGCCAGGGCACTCTTCTCCAGGCCAC
CGGATCCGCCAGAGCCGGCATAAAGCTGCCGC

BS08805.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-PA 957 CG6412-RA 42..957 932..17 4580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-RA 1526 CG6412-RA 480..1395 932..17 4580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17499399..17499931 17..549 2665 100 Plus
2L 23513712 2L 17500035..17500284 548..797 1250 100 Plus
2L 23513712 2L 17500491..17500627 796..932 685 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:03:50 has no hits.

BS08805.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:34 Download gff for BS08805.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-PA 42..957 17..932 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:39 Download gff for BS08805.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-PA 42..957 17..932 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:55:53 Download gff for BS08805.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 480..1400 13..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:52 Download gff for BS08805.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 480..1400 13..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:52 Download gff for BS08805.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 17500492..17500627 797..932 100   Plus
2L 17499394..17499929 13..547 99 <- Plus
2L 17500035..17500283 548..796 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:55:53 Download gff for BS08805.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17499394..17499929 13..547 99 <- Plus
arm_2L 17500035..17500283 548..796 100 <- Plus
arm_2L 17500492..17500627 797..932 100   Plus

BS08805.5prime Sequence

932 bp (841 high quality bases) assembled on 2006-01-18

> BS08805.5prime
GAAGTTATCAGTCGACATGCTGCTACAAAGGTTTTTCACACGCGCACTTC
ACTCCACGCGGCAGCTTTATGCCGGCTCTGGCGGATCCGGTGGCCTGGAG
AAGAGTGCCCTGGCGGCGCTGAGGAAGAAAACCGGATACACCTTCGCCAA
TTGCAAGAAGGCGCTGGAGAAGCACAACAACGACGTCGGATTGGCTGAAA
AGTGGCTGCACGAGCAGGCCCAGACCCTCGGCTGGTCGAAGGCCACCAAG
GTCGCAGATCGAGCCACTGCACATGGTCTGATTGGAGTGCTCATCCGCGG
AAACCGGGGCGCCATGGTCGAGCTGAATTGCGAGACGGATTTCGTAGCCA
GGAACGATACCTTCAAGCGGTTCGTTGACCACGTCGCCTGCATGTGTCTG
CAATACACGGACTTGACGGACTTCGATGGAGATCTGTGGAAGCTTGGCTT
TGATGCGGACGCCCTCAGAAACTTGCGCACGGAGGAGGGACGCACGTTGG
GCGACCACCTGGCTCTGCTGATCGGCGCCATCGGGGAGAATGCCACCATC
CGGCGCGCATTGTGCTTTAAGGCTAACAACGACCTGAAGCTGGTGGGCTA
CGCCCATCCCGCACCCACCAATGTGGGCACCACGGAAGGCATCACCCAGG
TGGGCAAGTACGGAGCGATCGTAGCCTACCGATCCACGCACCCCCTGCTG
GACTTTGAGTTTCACAAGAGCATTTGCCAGCAAATCGTGGGCATGAAGCC
GACAAAGATCGGCGAATATGACAAGGACAAGCCGGCGGAGAACAAGGACG
ATGAGACGTGCCTGATTCACCAGGAGTATCTGCTCGATGCGGACAAGACG
GTGGGCGAGGCTTTGCAGGAGCACAACTGCGAGATCGTCGACTACCATCG
CTTCGAGTGCGGAGAGCACACGGAACGCAGCC

BS08805.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-PA 957 CG6412-RA 1..916 17..932 4580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-RA 1526 CG6412-RA 439..1354 17..932 4580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17499440..17499931 932..441 2460 100 Minus
2L 23513712 2L 17500035..17500284 442..193 1250 100 Minus
2L 23513712 2L 17500491..17500668 194..17 890 100 Minus
Blast to na_te.dros performed on 2015-02-04 04:03:04 has no hits.

BS08805.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:35 Download gff for BS08805.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-PA 1..916 17..932 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:40 Download gff for BS08805.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-PA 1..916 17..932 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:59:11 Download gff for BS08805.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 439..1354 17..932 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:34:07 Download gff for BS08805.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 439..1354 17..932 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:34:07 Download gff for BS08805.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17499440..17499929 443..932 100 <- Minus
2L 17500035..17500283 194..442 100 <- Minus
2L 17500492..17500668 17..193 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:59:11 Download gff for BS08805.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17499440..17499929 443..932 100 <- Minus
arm_2L 17500035..17500283 194..442 100 <- Minus
arm_2L 17500492..17500668 17..193 100   Minus

BS08805.complete Sequence

989 bp (989 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636271

> BS08805.complete
GAAGTTATCAGTCGACATGCTGCTACAAAGGTTTTTCACACGCGCACTTC
ACTCCACGCGGCAGCTTTATGCCGGCTCTGGCGGATCCGGTGGCCTGGAG
AAGAGTGCCCTGGCGGCGCTGAGGAAGAAAACCGGATACACCTTCGCCAA
TTGCAAGAAGGCGCTGGAGAAGCACAACAACGACGTCGGATTGGCTGAAA
AGTGGCTGCACGAGCAGGCCCAGACCCTCGGCTGGTCGAAGGCCACCAAG
GTCGCAGATCGAGCCACTGCACATGGTCTGATTGGAGTGCTCATCCGCGG
AAACCGGGGCGCCATGGTCGAGCTGAATTGCGAGACGGATTTCGTAGCCA
GGAACGATACCTTCAAGCGGTTCGTTGACCACGTCGCCTGCATGTGTCTG
CAATACACGGACTTGACGGACTTCGATGGAGATCTGTGGAAGCTTGGCTT
TGATGCGGACGCCCTCAGAAACTTGCGCACGGAGGAGGGACGCACGTTGG
GCGACCACCTGGCTCTGCTGATCGGCGCCATCGGGGAGAATGCCACCATC
CGGCGCGCATTGTGCTTTAAGGCTAACAACGACCTGAAGCTGGTGGGCTA
CGCCCATCCCGCACCCACCAATGTGGGCACCACGGAAGGCATCACCCAGG
TGGGCAAGTACGGAGCGATCGTAGCCTACCGATCCACGCACCCCCTGCTG
GACTTTGAGTTTCACAAGAGCATTTGCCAGCAAATCGTGGGCATGAAGCC
GACAAAGATCGGCGAATATGACAAGGACAAGCCGGCGGAGAACAAGGACG
ATGAGACGTGCCTGATTCACCAGGAGTATCTGCTCGATGCGGACAAGACG
GTGGGCGAGGCTTTGCAGGAGCACAACTGCGAGATCGTCGACTACCATCG
CTTCGAGTGCGGAGAGCACACGGAACGCAGCCTGGAGGCGATCATTCGCT
CGCAGCACCAGAGCAGCAATTAAAAGCTTTCTAGACCAT

BS08805.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-RA 957 CG6412-PA 1..957 17..973 4785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-RA 1526 CG6412-RA 439..1395 17..973 4785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17499399..17499931 973..441 2665 100 Minus
2L 23513712 2L 17500035..17500284 442..193 1250 100 Minus
2L 23513712 2L 17500491..17500668 194..17 890 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:49:09 has no hits.

BS08805.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:32 Download gff for BS08805.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 1..957 17..973 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:40 Download gff for BS08805.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 442..1403 17..977 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:58 Download gff for BS08805.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 439..1393 17..971 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:33 Download gff for BS08805.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 442..1403 17..977 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:39 Download gff for BS08805.complete
Subject Subject Range Query Range Percent Splice Strand
CG6412-RA 439..1393 17..971 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:39 Download gff for BS08805.complete
Subject Subject Range Query Range Percent Splice Strand
2L 17499401..17499929 443..971 100 <- Minus
2L 17500035..17500283 194..442 100 <- Minus
2L 17500492..17500668 17..193 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:58 Download gff for BS08805.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17499401..17499929 443..971 100 <- Minus
arm_2L 17500035..17500283 194..442 100 <- Minus
arm_2L 17500492..17500668 17..193 100   Minus

BS08805.pep Sequence

Translation from 16 to 972

> BS08805.pep
MLLQRFFTRALHSTRQLYAGSGGSGGLEKSALAALRKKTGYTFANCKKAL
EKHNNDVGLAEKWLHEQAQTLGWSKATKVADRATAHGLIGVLIRGNRGAM
VELNCETDFVARNDTFKRFVDHVACMCLQYTDLTDFDGDLWKLGFDADAL
RNLRTEEGRTLGDHLALLIGAIGENATIRRALCFKANNDLKLVGYAHPAP
TNVGTTEGITQVGKYGAIVAYRSTHPLLDFEFHKSICQQIVGMKPTKIGE
YDKDKPAENKDDETCLIHQEYLLDADKTVGEALQEHNCEIVDYHRFECGE
HTERSLEAIIRSQHQSSN*

BS08805.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6412-PA 318 CG6412-PA 1..318 1..318 1684 100 Plus