Clone Sequence Records
BS08805.3prime Sequence
932 bp (836 high quality bases) assembled on 2006-01-18
> BS08805.3prime
ATGGTCTAGAAAGCTTTTAATTGCTGCTCTGGTGCTGCGAGCGAATGATC
GCCTCCAGGCTGCGTTCCGTGTGCTCTCCGCACTCGAAGCGATGGTAGTC
GACGATCTCGCAGTTGTGCTCCTGCAAAGCCTCGCCCACCGTCTTGTCCG
CATCGAGCAGATACTCCTGGTGAATCAGGCACGTCTCATCGTCCTTGTTC
TCCGCCGGCTTGTCCTTGTCATATTCGCCGATCTTTGTCGGCTTCATGCC
CACGATTTGCTGGCAAATGCTCTTGTGAAACTCAAAGTCCAGCAGGGGGT
GCGTGGATCGGTAGGCTACGATCGCTCCGTACTTGCCCACCTGGGTGATG
CCTTCCGTGGTGCCCACATTGGTGGGTGCGGGATGGGCGTAGCCCACCAG
CTTCAGGTCGTTGTTAGCCTTAAAGCACAATGCGCGCCGGATGGTGGCAT
TCTCCCCGATGGCGCCGATCAGCAGAGCCAGGTGGTCGCCCAACGTGCGT
CCCTCCTCCGTGCGCAAGTTTCTGAGGGCGTCCGCATCAAAGCCAAGCTT
CCACAGATCTCCATCGAAGTCCGTCAAGTCCGTGTATTGCAGACACATGC
AGGCGACGTGGTCAACGAACCGCTTGAAGGTATCGTTCCTGGCTACGAAA
TCCGTCTCGCAATTCAGCTCGACCATGGCGCCCCGGTTTCCGCGGATGAG
CACTCCAATCAGACCATGTGCAGTGGCTCGATCTGCGACCTTGGTGGCCT
TCGACCAGCCGAGGGTCTGGGCCTGCTCGTGCAGCCACTTTTCAGCCAAT
CCGACGTCGTTGTTGTGCTTCTCCAGCGCCTTCTTGCAATTGGCGAAGGT
GTATCCGGTTTTCTTCCTCAGCGCCGCCAGGGCACTCTTCTCCAGGCCAC
CGGATCCGCCAGAGCCGGCATAAAGCTGCCGC
BS08805.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6412-PA | 957 | CG6412-RA | 42..957 | 932..17 | 4580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6412-RA | 1526 | CG6412-RA | 480..1395 | 932..17 | 4580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17499399..17499931 | 17..549 | 2665 | 100 | Plus |
2L | 23513712 | 2L | 17500035..17500284 | 548..797 | 1250 | 100 | Plus |
2L | 23513712 | 2L | 17500491..17500627 | 796..932 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:03:50 has no hits.
BS08805.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:34 Download gff for
BS08805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-PA | 42..957 | 17..932 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:39 Download gff for
BS08805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-PA | 42..957 | 17..932 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:55:53 Download gff for
BS08805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 480..1400 | 13..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:52 Download gff for
BS08805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 480..1400 | 13..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:52 Download gff for
BS08805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17500492..17500627 | 797..932 | 100 | | Plus |
2L | 17499394..17499929 | 13..547 | 99 | <- | Plus |
2L | 17500035..17500283 | 548..796 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:55:53 Download gff for
BS08805.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17499394..17499929 | 13..547 | 99 | <- | Plus |
arm_2L | 17500035..17500283 | 548..796 | 100 | <- | Plus |
arm_2L | 17500492..17500627 | 797..932 | 100 | | Plus |
BS08805.5prime Sequence
932 bp (841 high quality bases) assembled on 2006-01-18
> BS08805.5prime
GAAGTTATCAGTCGACATGCTGCTACAAAGGTTTTTCACACGCGCACTTC
ACTCCACGCGGCAGCTTTATGCCGGCTCTGGCGGATCCGGTGGCCTGGAG
AAGAGTGCCCTGGCGGCGCTGAGGAAGAAAACCGGATACACCTTCGCCAA
TTGCAAGAAGGCGCTGGAGAAGCACAACAACGACGTCGGATTGGCTGAAA
AGTGGCTGCACGAGCAGGCCCAGACCCTCGGCTGGTCGAAGGCCACCAAG
GTCGCAGATCGAGCCACTGCACATGGTCTGATTGGAGTGCTCATCCGCGG
AAACCGGGGCGCCATGGTCGAGCTGAATTGCGAGACGGATTTCGTAGCCA
GGAACGATACCTTCAAGCGGTTCGTTGACCACGTCGCCTGCATGTGTCTG
CAATACACGGACTTGACGGACTTCGATGGAGATCTGTGGAAGCTTGGCTT
TGATGCGGACGCCCTCAGAAACTTGCGCACGGAGGAGGGACGCACGTTGG
GCGACCACCTGGCTCTGCTGATCGGCGCCATCGGGGAGAATGCCACCATC
CGGCGCGCATTGTGCTTTAAGGCTAACAACGACCTGAAGCTGGTGGGCTA
CGCCCATCCCGCACCCACCAATGTGGGCACCACGGAAGGCATCACCCAGG
TGGGCAAGTACGGAGCGATCGTAGCCTACCGATCCACGCACCCCCTGCTG
GACTTTGAGTTTCACAAGAGCATTTGCCAGCAAATCGTGGGCATGAAGCC
GACAAAGATCGGCGAATATGACAAGGACAAGCCGGCGGAGAACAAGGACG
ATGAGACGTGCCTGATTCACCAGGAGTATCTGCTCGATGCGGACAAGACG
GTGGGCGAGGCTTTGCAGGAGCACAACTGCGAGATCGTCGACTACCATCG
CTTCGAGTGCGGAGAGCACACGGAACGCAGCC
BS08805.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6412-PA | 957 | CG6412-RA | 1..916 | 17..932 | 4580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:03:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6412-RA | 1526 | CG6412-RA | 439..1354 | 17..932 | 4580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:03:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17499440..17499931 | 932..441 | 2460 | 100 | Minus |
2L | 23513712 | 2L | 17500035..17500284 | 442..193 | 1250 | 100 | Minus |
2L | 23513712 | 2L | 17500491..17500668 | 194..17 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:03:04 has no hits.
BS08805.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:35 Download gff for
BS08805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-PA | 1..916 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:40 Download gff for
BS08805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-PA | 1..916 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:59:11 Download gff for
BS08805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 439..1354 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:34:07 Download gff for
BS08805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 439..1354 | 17..932 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:34:07 Download gff for
BS08805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17499440..17499929 | 443..932 | 100 | <- | Minus |
2L | 17500035..17500283 | 194..442 | 100 | <- | Minus |
2L | 17500492..17500668 | 17..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:59:11 Download gff for
BS08805.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17499440..17499929 | 443..932 | 100 | <- | Minus |
arm_2L | 17500035..17500283 | 194..442 | 100 | <- | Minus |
arm_2L | 17500492..17500668 | 17..193 | 100 | | Minus |
BS08805.complete Sequence
989 bp (989 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636271
> BS08805.complete
GAAGTTATCAGTCGACATGCTGCTACAAAGGTTTTTCACACGCGCACTTC
ACTCCACGCGGCAGCTTTATGCCGGCTCTGGCGGATCCGGTGGCCTGGAG
AAGAGTGCCCTGGCGGCGCTGAGGAAGAAAACCGGATACACCTTCGCCAA
TTGCAAGAAGGCGCTGGAGAAGCACAACAACGACGTCGGATTGGCTGAAA
AGTGGCTGCACGAGCAGGCCCAGACCCTCGGCTGGTCGAAGGCCACCAAG
GTCGCAGATCGAGCCACTGCACATGGTCTGATTGGAGTGCTCATCCGCGG
AAACCGGGGCGCCATGGTCGAGCTGAATTGCGAGACGGATTTCGTAGCCA
GGAACGATACCTTCAAGCGGTTCGTTGACCACGTCGCCTGCATGTGTCTG
CAATACACGGACTTGACGGACTTCGATGGAGATCTGTGGAAGCTTGGCTT
TGATGCGGACGCCCTCAGAAACTTGCGCACGGAGGAGGGACGCACGTTGG
GCGACCACCTGGCTCTGCTGATCGGCGCCATCGGGGAGAATGCCACCATC
CGGCGCGCATTGTGCTTTAAGGCTAACAACGACCTGAAGCTGGTGGGCTA
CGCCCATCCCGCACCCACCAATGTGGGCACCACGGAAGGCATCACCCAGG
TGGGCAAGTACGGAGCGATCGTAGCCTACCGATCCACGCACCCCCTGCTG
GACTTTGAGTTTCACAAGAGCATTTGCCAGCAAATCGTGGGCATGAAGCC
GACAAAGATCGGCGAATATGACAAGGACAAGCCGGCGGAGAACAAGGACG
ATGAGACGTGCCTGATTCACCAGGAGTATCTGCTCGATGCGGACAAGACG
GTGGGCGAGGCTTTGCAGGAGCACAACTGCGAGATCGTCGACTACCATCG
CTTCGAGTGCGGAGAGCACACGGAACGCAGCCTGGAGGCGATCATTCGCT
CGCAGCACCAGAGCAGCAATTAAAAGCTTTCTAGACCAT
BS08805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6412-RA | 957 | CG6412-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6412-RA | 1526 | CG6412-RA | 439..1395 | 17..973 | 4785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 17499399..17499931 | 973..441 | 2665 | 100 | Minus |
2L | 23513712 | 2L | 17500035..17500284 | 442..193 | 1250 | 100 | Minus |
2L | 23513712 | 2L | 17500491..17500668 | 194..17 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:49:09 has no hits.
BS08805.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:32 Download gff for
BS08805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 1..957 | 17..973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:40 Download gff for
BS08805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 442..1403 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:58 Download gff for
BS08805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 439..1393 | 17..971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:33 Download gff for
BS08805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 442..1403 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:39 Download gff for
BS08805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6412-RA | 439..1393 | 17..971 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:39 Download gff for
BS08805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 17499401..17499929 | 443..971 | 100 | <- | Minus |
2L | 17500035..17500283 | 194..442 | 100 | <- | Minus |
2L | 17500492..17500668 | 17..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:58 Download gff for
BS08805.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 17499401..17499929 | 443..971 | 100 | <- | Minus |
arm_2L | 17500035..17500283 | 194..442 | 100 | <- | Minus |
arm_2L | 17500492..17500668 | 17..193 | 100 | | Minus |
BS08805.pep Sequence
Translation from 16 to 972
> BS08805.pep
MLLQRFFTRALHSTRQLYAGSGGSGGLEKSALAALRKKTGYTFANCKKAL
EKHNNDVGLAEKWLHEQAQTLGWSKATKVADRATAHGLIGVLIRGNRGAM
VELNCETDFVARNDTFKRFVDHVACMCLQYTDLTDFDGDLWKLGFDADAL
RNLRTEEGRTLGDHLALLIGAIGENATIRRALCFKANNDLKLVGYAHPAP
TNVGTTEGITQVGKYGAIVAYRSTHPLLDFEFHKSICQQIVGMKPTKIGE
YDKDKPAENKDDETCLIHQEYLLDADKTVGEALQEHNCEIVDYHRFECGE
HTERSLEAIIRSQHQSSN*
BS08805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6412-PA | 318 | CG6412-PA | 1..318 | 1..318 | 1684 | 100 | Plus |