Clone BS08807 Report

Search the DGRC for BS08807

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG5168-RA
Protein status:BS08807.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08807.3prime Sequence

919 bp (815 high quality bases) assembled on 2006-01-18

> BS08807.3prime
ATGGTCTAGAAAGCTTTTATGCCCAGATGTTGGAGAGATCCCAGATCTTG
ATGAGCCTGTCCTGGCCCACTGTCAACAGGCGCTTTCTGTCCTCGTCCAG
GTCCATGTAGACGATCGAATGCTTGGCGTCATTGAATGAAGCCAGCGAGG
GGCGCTCGACTGTCTGAAGTTGTTTGTAGCACGGATCACAGGTACGCACA
TCAAACTCGAAGCCCATTATGGGTATGTTAATGCGATTGGTGGAACAGTT
GTCGCACACGGCTTTGCCGCAGTGGCGACAATGATGCTGTCGTATTCCCA
GCTGCTTTTGATCCATCATTGAGCGGAAGTTCCAGAAGAAGGGCCTGGAG
CAAAGCTGACAGTTGTTGGTATCCACCCAGCCAGGAACCTCTTTCCGCAT
TGCATTCATTTCCCAAAAAACCACTACTGAATCTTCGCCACAGCTTATCA
GTTGTTGCGTGTGATTCGCGTACGACAGGGCGGAAACTTTGTTGCTATGT
CCCTGCAGCTCGTAAATGGTGCCACGTTTGCCACCAACATCCCAAACTAG
CACGGACTGATCGCAAGCTCCGCTAAACAAGAGCTGAGGGCCTTCCACCC
ATTTGAGGCACCGGATTTCCGCCGAATGTCCATTGAAAGTGGTAATTAGT
TGCACTCCCTGAACATCGCACCTTAGCATTGTTATCTGTCCAGCATGATC
GCCCACAAAGGCATACTTGGCCAAAGCGTCGAACTGGAGAGCCGTGCATG
GTGTCTCAAAGTTGTATCCGCCCACCCGTTTGCCGCTCTCCGTGCAATGA
TAGGCGAACTGCTTATCTTTGCCGGCGGAGAGTATCCACTTGTGGGTTTT
CGAGAAGACCACGGCCATGACCCGCGCTTGATGGGACAAGTAATCCCGCA
NGAAGGACAGGCGATTGCA

BS08807.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5168-PA 1227 CG5168-RA 325..1227 919..17 4496 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5168-RB 1584 CG5168-RB 472..1376 919..15 4514 99.9 Minus
CG5168-RA 1623 CG5168-RA 511..1415 919..15 4514 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10424991..10425274 298..15 1420 100 Minus
2L 23513712 2L 10424731..10424931 497..297 1005 100 Minus
2L 23513712 2L 10423914..10424100 919..733 924 99.5 Minus
2L 23513712 2L 10424543..10424670 622..495 640 100 Minus
2L 23513712 2L 10424371..10424483 734..622 565 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:09:25 has no hits.

BS08807.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:38 Download gff for BS08807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5168-PA 326..1227 17..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:44 Download gff for BS08807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5168-PA 326..1227 17..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:48:31 Download gff for BS08807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 512..1421 8..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:45 Download gff for BS08807.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 512..1421 8..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:45 Download gff for BS08807.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10424992..10425280 8..297 98   Minus
2L 10423915..10424098 735..918 99 -> Minus
2L 10424371..10424483 622..734 100 -> Minus
2L 10424544..10424670 495..621 100 -> Minus
2L 10424734..10424930 298..494 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:48:31 Download gff for BS08807.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10423915..10424098 735..918 99 -> Minus
arm_2L 10424371..10424483 622..734 100 -> Minus
arm_2L 10424544..10424670 495..621 100 -> Minus
arm_2L 10424734..10424930 298..494 100 -> Minus
arm_2L 10424992..10425280 8..297 98   Minus

BS08807.5prime Sequence

883 bp (764 high quality bases) assembled on 2006-01-18

> BS08807.5prime
GAAGTTATCAGTCGACATGGCTGCCGAGATAAAACCAGCTCAGCGGACCA
ACAATGATCGCTTTAACACCTCCAAAAAGCCGGAATTGCTGAGTAAGCTG
GAGGGCAGCAGCGACGATGTGAACGCAGCGATCCTAATTCCGGGCGAAAA
CGGCGTAATTAGCGTTTCCGATGACAAAACCGTTCGCGTTTGGCTAAAAC
GCGATTCTGGTCAATATTGGCCTAGCATTTGCCAGTATATGCCTTCCGGC
TGCACGGCCATCGAGTACGTTTCGGAATCCCGGCACCTGTACGTCGGCCA
GGAAAACGGAACGGTCACCCAGTACGCGCTATCCGAAGACTGCAATCGCC
TGTCCTTCCTGCGGGATTACTTGTCCCATCAAGCGCGGGTCATGGCCGTG
GTCTTCTCGAAAACCCACAAGTGGATACTCTCCGCCGGCAAAGATAAGCA
GTTCGCCTATCATTGCACGGAGAGCGGCAAACGGGTGGGCGGATACAACT
TTGAGACACCATGCACGGCTCTCCAGTTCGACGCTTTGGCCAAGTATGCC
TTTGTGGGCGATCATGCTGGACAGATAACAATGCTAAGGTGCGATGTTCA
GGGAGTGCAACTAATTACCACTTTCAATGGACATTCGGCGGAAATCCGGT
GCCTCAAATGGGTGGAAGGCCCTCAGCTCTTGTTTAGCGGAGCTTGCGAT
CAGTCCGTGCTAGTTTGGGATGTTGGTGGCAAACGTGGCACCATTTACGA
GCTGCAGGGACATAGCAACAAAGTTTCCGCCCTGTCGTACGCGAATCACA
CGCAACAACTGATAAGCTGTGGCGAAGATTCAGTAGTGGTTTTTTGGGAA
ATGAATGCAATGCGGAAAGAGGTTCCTGGCTGG

BS08807.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5168-PA 1227 CG5168-RA 1..867 17..883 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5168-RB 1584 CG5168-RB 148..1014 17..883 4335 100 Plus
CG5168-RA 1623 CG5168-RA 187..1053 17..883 4335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10423751..10424100 178..527 1750 100 Plus
2L 23513712 2L 10423520..10423680 17..177 805 100 Plus
2L 23513712 2L 10424543..10424670 638..765 640 100 Plus
2L 23513712 2L 10424731..10424851 763..883 605 100 Plus
2L 23513712 2L 10424371..10424483 526..638 565 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:33:55 has no hits.

BS08807.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:39 Download gff for BS08807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5168-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:46 Download gff for BS08807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5168-PA 1..867 17..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:58:17 Download gff for BS08807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 187..1053 17..883 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:26 Download gff for BS08807.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 187..1053 17..883 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:26 Download gff for BS08807.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10423520..10423680 17..177 100 -> Plus
2L 10423751..10424098 178..525 100 -> Plus
2L 10424371..10424483 526..638 100 -> Plus
2L 10424544..10424670 639..765 100 -> Plus
2L 10424734..10424851 766..883 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:58:17 Download gff for BS08807.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10423520..10423680 17..177 100 -> Plus
arm_2L 10423751..10424098 178..525 100 -> Plus
arm_2L 10424371..10424483 526..638 100 -> Plus
arm_2L 10424544..10424670 639..765 100 -> Plus
arm_2L 10424734..10424851 766..883 100   Plus

BS08807.complete Sequence

1259 bp (1259 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636272

> BS08807.complete
GAAGTTATCAGTCGACATGGCTGCCGAGATAAAACCAGCTCAGCGGACCA
ACAATGATCGCTTTAACACCTCCAAAAAGCCGGAATTGCTGAGTAAGCTG
GAGGGCAGCAGCGACGATGTGAACGCAGCGATCCTAATTCCGGGCGAAAA
CGGCGTAATTAGCGTTTCCGATGACAAAACCGTTCGCGTTTGGCTAAAAC
GCGATTCTGGTCAATATTGGCCTAGCATTTGCCAGTATATGCCTTCCGGC
TGCACGGCCATCGAGTACGTTTCGGAATCCCGGCACCTGTACGTCGGCCA
GGAAAACGGAACGGTCACCCAGTACGCGCTATCCGAAGACTGCAATCGCC
TGTCCTTCCTGCGGGATTACTTGTCCCATCAAGCGCGGGTCATGGCCGTG
GTCTTCTCGAAAACCCACAAGTGGATACTCTCCGCCGGCAAAGATAAGCA
GTTCGCCTATCATTGCACGGAGAGCGGCAAACGGGTGGGCGGATACAACT
TTGAGACACCATGCACGGCTCTCCAGTTCGACGCTTTGGCCAAGTATGCC
TTTGTGGGCGATCATGCTGGACAGATAACAATGCTAAGGTGCGATGTTCA
GGGAGTGCAACTAATTACCACTTTCAATGGACATTCGGCGGAAATCCGGT
GCCTCAAATGGGTGGAAGGCCCTCAGCTCTTGTTTAGCGGAGCTTGCGAT
CAGTCCGTGCTAGTTTGGGATGTTGGTGGCAAACGTGGCACCATTTACGA
GCTGCAGGGACATAGCAACAAAGTTTCCGCCCTGTCGTACGCGAATCACA
CGCAACAACTGATAAGCTGTGGCGAAGATTCAGTAGTGGTTTTTTGGGAA
ATGAATGCAATGCGGAAAGAGGTTCCTGGCTGGGTGGATACCAACAACTG
TCAGCTTTGCTCCAGGCCCTTCTTCTGGAACTTCCGCTCAATGATGGATC
AAAAGCAGCTGGGAATACGACAGCATCATTGTCGCCACTGCGGCAAAGCC
GTGTGCGACAACTGTTCCACCAATCGCATTAACATACCCATAATGGGCTT
CGAGTTTGATGTGCGTACCTGTGATCCGTGCTACAAACAACTTCAGACAG
TCGAGCGCCCCTCGCTGGCTTCATTCAATGACGCCAAGCATTCGATCGTC
TACATGGACCTGGACGAGGACAGAAAGCGCCTGTTGACAGTGGGCCAGGA
CAGGCTCATCAAGATCTGGGATCTCTCCAACATCTGGGCATAAAAGCTTT
CTAGACCAT

BS08807.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5168-RB 1227 CG5168-PB 1..1227 17..1243 6135 100 Plus
CG5168-RA 1227 CG5168-PA 1..1227 17..1243 6135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG5168-RB 1584 CG5168-RB 148..1376 17..1245 6145 100 Plus
CG5168-RA 1623 CG5168-RA 187..1415 17..1245 6145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10423751..10424100 178..527 1750 100 Plus
2L 23513712 2L 10424991..10425274 962..1245 1420 100 Plus
2L 23513712 2L 10424731..10424931 763..963 1005 100 Plus
2L 23513712 2L 10423520..10423680 17..177 805 100 Plus
2L 23513712 2L 10424543..10424670 638..765 640 100 Plus
2L 23513712 2L 10424371..10424483 526..638 565 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:46:10 has no hits.

BS08807.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:16 Download gff for BS08807.complete
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 1..1227 17..1243 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:28 Download gff for BS08807.complete
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 206..1440 17..1252 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:05 Download gff for BS08807.complete
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 187..1411 17..1241 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:16 Download gff for BS08807.complete
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 206..1440 17..1252 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:19 Download gff for BS08807.complete
Subject Subject Range Query Range Percent Splice Strand
CG5168-RA 187..1411 17..1241 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:19 Download gff for BS08807.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10423520..10423680 17..177 100 -> Plus
2L 10423751..10424098 178..525 100 -> Plus
2L 10424371..10424483 526..638 100 -> Plus
2L 10424544..10424670 639..765 100 -> Plus
2L 10424734..10424930 766..962 100 -> Plus
2L 10424992..10425270 963..1241 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:05 Download gff for BS08807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10424992..10425270 963..1241 100   Plus
arm_2L 10423520..10423680 17..177 100 -> Plus
arm_2L 10423751..10424098 178..525 100 -> Plus
arm_2L 10424371..10424483 526..638 100 -> Plus
arm_2L 10424544..10424670 639..765 100 -> Plus
arm_2L 10424734..10424930 766..962 100 -> Plus

BS08807.pep Sequence

Translation from 16 to 1242

> BS08807.pep
MAAEIKPAQRTNNDRFNTSKKPELLSKLEGSSDDVNAAILIPGENGVISV
SDDKTVRVWLKRDSGQYWPSICQYMPSGCTAIEYVSESRHLYVGQENGTV
TQYALSEDCNRLSFLRDYLSHQARVMAVVFSKTHKWILSAGKDKQFAYHC
TESGKRVGGYNFETPCTALQFDALAKYAFVGDHAGQITMLRCDVQGVQLI
TTFNGHSAEIRCLKWVEGPQLLFSGACDQSVLVWDVGGKRGTIYELQGHS
NKVSALSYANHTQQLISCGEDSVVVFWEMNAMRKEVPGWVDTNNCQLCSR
PFFWNFRSMMDQKQLGIRQHHCRHCGKAVCDNCSTNRINIPIMGFEFDVR
TCDPCYKQLQTVERPSLASFNDAKHSIVYMDLDEDRKRLLTVGQDRLIKI
WDLSNIWA*

BS08807.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5168-PB 408 CG5168-PB 1..408 1..408 2205 100 Plus
CG5168-PA 408 CG5168-PA 1..408 1..408 2205 100 Plus