Clone Sequence Records
BS08807.3prime Sequence
919 bp (815 high quality bases) assembled on 2006-01-18
> BS08807.3prime
ATGGTCTAGAAAGCTTTTATGCCCAGATGTTGGAGAGATCCCAGATCTTG
ATGAGCCTGTCCTGGCCCACTGTCAACAGGCGCTTTCTGTCCTCGTCCAG
GTCCATGTAGACGATCGAATGCTTGGCGTCATTGAATGAAGCCAGCGAGG
GGCGCTCGACTGTCTGAAGTTGTTTGTAGCACGGATCACAGGTACGCACA
TCAAACTCGAAGCCCATTATGGGTATGTTAATGCGATTGGTGGAACAGTT
GTCGCACACGGCTTTGCCGCAGTGGCGACAATGATGCTGTCGTATTCCCA
GCTGCTTTTGATCCATCATTGAGCGGAAGTTCCAGAAGAAGGGCCTGGAG
CAAAGCTGACAGTTGTTGGTATCCACCCAGCCAGGAACCTCTTTCCGCAT
TGCATTCATTTCCCAAAAAACCACTACTGAATCTTCGCCACAGCTTATCA
GTTGTTGCGTGTGATTCGCGTACGACAGGGCGGAAACTTTGTTGCTATGT
CCCTGCAGCTCGTAAATGGTGCCACGTTTGCCACCAACATCCCAAACTAG
CACGGACTGATCGCAAGCTCCGCTAAACAAGAGCTGAGGGCCTTCCACCC
ATTTGAGGCACCGGATTTCCGCCGAATGTCCATTGAAAGTGGTAATTAGT
TGCACTCCCTGAACATCGCACCTTAGCATTGTTATCTGTCCAGCATGATC
GCCCACAAAGGCATACTTGGCCAAAGCGTCGAACTGGAGAGCCGTGCATG
GTGTCTCAAAGTTGTATCCGCCCACCCGTTTGCCGCTCTCCGTGCAATGA
TAGGCGAACTGCTTATCTTTGCCGGCGGAGAGTATCCACTTGTGGGTTTT
CGAGAAGACCACGGCCATGACCCGCGCTTGATGGGACAAGTAATCCCGCA
NGAAGGACAGGCGATTGCA
BS08807.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5168-PA | 1227 | CG5168-RA | 325..1227 | 919..17 | 4496 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5168-RB | 1584 | CG5168-RB | 472..1376 | 919..15 | 4514 | 99.9 | Minus |
CG5168-RA | 1623 | CG5168-RA | 511..1415 | 919..15 | 4514 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:09:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10424991..10425274 | 298..15 | 1420 | 100 | Minus |
2L | 23513712 | 2L | 10424731..10424931 | 497..297 | 1005 | 100 | Minus |
2L | 23513712 | 2L | 10423914..10424100 | 919..733 | 924 | 99.5 | Minus |
2L | 23513712 | 2L | 10424543..10424670 | 622..495 | 640 | 100 | Minus |
2L | 23513712 | 2L | 10424371..10424483 | 734..622 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:09:25 has no hits.
BS08807.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:38 Download gff for
BS08807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-PA | 326..1227 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:44 Download gff for
BS08807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-PA | 326..1227 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:48:31 Download gff for
BS08807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 512..1421 | 8..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:45 Download gff for
BS08807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 512..1421 | 8..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:45 Download gff for
BS08807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10424992..10425280 | 8..297 | 98 | | Minus |
2L | 10423915..10424098 | 735..918 | 99 | -> | Minus |
2L | 10424371..10424483 | 622..734 | 100 | -> | Minus |
2L | 10424544..10424670 | 495..621 | 100 | -> | Minus |
2L | 10424734..10424930 | 298..494 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:48:31 Download gff for
BS08807.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10423915..10424098 | 735..918 | 99 | -> | Minus |
arm_2L | 10424371..10424483 | 622..734 | 100 | -> | Minus |
arm_2L | 10424544..10424670 | 495..621 | 100 | -> | Minus |
arm_2L | 10424734..10424930 | 298..494 | 100 | -> | Minus |
arm_2L | 10424992..10425280 | 8..297 | 98 | | Minus |
BS08807.5prime Sequence
883 bp (764 high quality bases) assembled on 2006-01-18
> BS08807.5prime
GAAGTTATCAGTCGACATGGCTGCCGAGATAAAACCAGCTCAGCGGACCA
ACAATGATCGCTTTAACACCTCCAAAAAGCCGGAATTGCTGAGTAAGCTG
GAGGGCAGCAGCGACGATGTGAACGCAGCGATCCTAATTCCGGGCGAAAA
CGGCGTAATTAGCGTTTCCGATGACAAAACCGTTCGCGTTTGGCTAAAAC
GCGATTCTGGTCAATATTGGCCTAGCATTTGCCAGTATATGCCTTCCGGC
TGCACGGCCATCGAGTACGTTTCGGAATCCCGGCACCTGTACGTCGGCCA
GGAAAACGGAACGGTCACCCAGTACGCGCTATCCGAAGACTGCAATCGCC
TGTCCTTCCTGCGGGATTACTTGTCCCATCAAGCGCGGGTCATGGCCGTG
GTCTTCTCGAAAACCCACAAGTGGATACTCTCCGCCGGCAAAGATAAGCA
GTTCGCCTATCATTGCACGGAGAGCGGCAAACGGGTGGGCGGATACAACT
TTGAGACACCATGCACGGCTCTCCAGTTCGACGCTTTGGCCAAGTATGCC
TTTGTGGGCGATCATGCTGGACAGATAACAATGCTAAGGTGCGATGTTCA
GGGAGTGCAACTAATTACCACTTTCAATGGACATTCGGCGGAAATCCGGT
GCCTCAAATGGGTGGAAGGCCCTCAGCTCTTGTTTAGCGGAGCTTGCGAT
CAGTCCGTGCTAGTTTGGGATGTTGGTGGCAAACGTGGCACCATTTACGA
GCTGCAGGGACATAGCAACAAAGTTTCCGCCCTGTCGTACGCGAATCACA
CGCAACAACTGATAAGCTGTGGCGAAGATTCAGTAGTGGTTTTTTGGGAA
ATGAATGCAATGCGGAAAGAGGTTCCTGGCTGG
BS08807.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5168-PA | 1227 | CG5168-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5168-RB | 1584 | CG5168-RB | 148..1014 | 17..883 | 4335 | 100 | Plus |
CG5168-RA | 1623 | CG5168-RA | 187..1053 | 17..883 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10423751..10424100 | 178..527 | 1750 | 100 | Plus |
2L | 23513712 | 2L | 10423520..10423680 | 17..177 | 805 | 100 | Plus |
2L | 23513712 | 2L | 10424543..10424670 | 638..765 | 640 | 100 | Plus |
2L | 23513712 | 2L | 10424731..10424851 | 763..883 | 605 | 100 | Plus |
2L | 23513712 | 2L | 10424371..10424483 | 526..638 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:33:55 has no hits.
BS08807.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:39 Download gff for
BS08807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:46 Download gff for
BS08807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:58:17 Download gff for
BS08807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 187..1053 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:34:26 Download gff for
BS08807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 187..1053 | 17..883 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:34:26 Download gff for
BS08807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10423520..10423680 | 17..177 | 100 | -> | Plus |
2L | 10423751..10424098 | 178..525 | 100 | -> | Plus |
2L | 10424371..10424483 | 526..638 | 100 | -> | Plus |
2L | 10424544..10424670 | 639..765 | 100 | -> | Plus |
2L | 10424734..10424851 | 766..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:58:17 Download gff for
BS08807.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10423520..10423680 | 17..177 | 100 | -> | Plus |
arm_2L | 10423751..10424098 | 178..525 | 100 | -> | Plus |
arm_2L | 10424371..10424483 | 526..638 | 100 | -> | Plus |
arm_2L | 10424544..10424670 | 639..765 | 100 | -> | Plus |
arm_2L | 10424734..10424851 | 766..883 | 100 | | Plus |
BS08807.complete Sequence
1259 bp (1259 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636272
> BS08807.complete
GAAGTTATCAGTCGACATGGCTGCCGAGATAAAACCAGCTCAGCGGACCA
ACAATGATCGCTTTAACACCTCCAAAAAGCCGGAATTGCTGAGTAAGCTG
GAGGGCAGCAGCGACGATGTGAACGCAGCGATCCTAATTCCGGGCGAAAA
CGGCGTAATTAGCGTTTCCGATGACAAAACCGTTCGCGTTTGGCTAAAAC
GCGATTCTGGTCAATATTGGCCTAGCATTTGCCAGTATATGCCTTCCGGC
TGCACGGCCATCGAGTACGTTTCGGAATCCCGGCACCTGTACGTCGGCCA
GGAAAACGGAACGGTCACCCAGTACGCGCTATCCGAAGACTGCAATCGCC
TGTCCTTCCTGCGGGATTACTTGTCCCATCAAGCGCGGGTCATGGCCGTG
GTCTTCTCGAAAACCCACAAGTGGATACTCTCCGCCGGCAAAGATAAGCA
GTTCGCCTATCATTGCACGGAGAGCGGCAAACGGGTGGGCGGATACAACT
TTGAGACACCATGCACGGCTCTCCAGTTCGACGCTTTGGCCAAGTATGCC
TTTGTGGGCGATCATGCTGGACAGATAACAATGCTAAGGTGCGATGTTCA
GGGAGTGCAACTAATTACCACTTTCAATGGACATTCGGCGGAAATCCGGT
GCCTCAAATGGGTGGAAGGCCCTCAGCTCTTGTTTAGCGGAGCTTGCGAT
CAGTCCGTGCTAGTTTGGGATGTTGGTGGCAAACGTGGCACCATTTACGA
GCTGCAGGGACATAGCAACAAAGTTTCCGCCCTGTCGTACGCGAATCACA
CGCAACAACTGATAAGCTGTGGCGAAGATTCAGTAGTGGTTTTTTGGGAA
ATGAATGCAATGCGGAAAGAGGTTCCTGGCTGGGTGGATACCAACAACTG
TCAGCTTTGCTCCAGGCCCTTCTTCTGGAACTTCCGCTCAATGATGGATC
AAAAGCAGCTGGGAATACGACAGCATCATTGTCGCCACTGCGGCAAAGCC
GTGTGCGACAACTGTTCCACCAATCGCATTAACATACCCATAATGGGCTT
CGAGTTTGATGTGCGTACCTGTGATCCGTGCTACAAACAACTTCAGACAG
TCGAGCGCCCCTCGCTGGCTTCATTCAATGACGCCAAGCATTCGATCGTC
TACATGGACCTGGACGAGGACAGAAAGCGCCTGTTGACAGTGGGCCAGGA
CAGGCTCATCAAGATCTGGGATCTCTCCAACATCTGGGCATAAAAGCTTT
CTAGACCAT
BS08807.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5168-RB | 1227 | CG5168-PB | 1..1227 | 17..1243 | 6135 | 100 | Plus |
CG5168-RA | 1227 | CG5168-PA | 1..1227 | 17..1243 | 6135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5168-RB | 1584 | CG5168-RB | 148..1376 | 17..1245 | 6145 | 100 | Plus |
CG5168-RA | 1623 | CG5168-RA | 187..1415 | 17..1245 | 6145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10423751..10424100 | 178..527 | 1750 | 100 | Plus |
2L | 23513712 | 2L | 10424991..10425274 | 962..1245 | 1420 | 100 | Plus |
2L | 23513712 | 2L | 10424731..10424931 | 763..963 | 1005 | 100 | Plus |
2L | 23513712 | 2L | 10423520..10423680 | 17..177 | 805 | 100 | Plus |
2L | 23513712 | 2L | 10424543..10424670 | 638..765 | 640 | 100 | Plus |
2L | 23513712 | 2L | 10424371..10424483 | 526..638 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:46:10 has no hits.
BS08807.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:16 Download gff for
BS08807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 1..1227 | 17..1243 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:28 Download gff for
BS08807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 206..1440 | 17..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:05 Download gff for
BS08807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 187..1411 | 17..1241 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:16 Download gff for
BS08807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 206..1440 | 17..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:19 Download gff for
BS08807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 187..1411 | 17..1241 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:19 Download gff for
BS08807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10423520..10423680 | 17..177 | 100 | -> | Plus |
2L | 10423751..10424098 | 178..525 | 100 | -> | Plus |
2L | 10424371..10424483 | 526..638 | 100 | -> | Plus |
2L | 10424544..10424670 | 639..765 | 100 | -> | Plus |
2L | 10424734..10424930 | 766..962 | 100 | -> | Plus |
2L | 10424992..10425270 | 963..1241 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:05 Download gff for
BS08807.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10424992..10425270 | 963..1241 | 100 | | Plus |
arm_2L | 10423520..10423680 | 17..177 | 100 | -> | Plus |
arm_2L | 10423751..10424098 | 178..525 | 100 | -> | Plus |
arm_2L | 10424371..10424483 | 526..638 | 100 | -> | Plus |
arm_2L | 10424544..10424670 | 639..765 | 100 | -> | Plus |
arm_2L | 10424734..10424930 | 766..962 | 100 | -> | Plus |
BS08807.pep Sequence
Translation from 16 to 1242
> BS08807.pep
MAAEIKPAQRTNNDRFNTSKKPELLSKLEGSSDDVNAAILIPGENGVISV
SDDKTVRVWLKRDSGQYWPSICQYMPSGCTAIEYVSESRHLYVGQENGTV
TQYALSEDCNRLSFLRDYLSHQARVMAVVFSKTHKWILSAGKDKQFAYHC
TESGKRVGGYNFETPCTALQFDALAKYAFVGDHAGQITMLRCDVQGVQLI
TTFNGHSAEIRCLKWVEGPQLLFSGACDQSVLVWDVGGKRGTIYELQGHS
NKVSALSYANHTQQLISCGEDSVVVFWEMNAMRKEVPGWVDTNNCQLCSR
PFFWNFRSMMDQKQLGIRQHHCRHCGKAVCDNCSTNRINIPIMGFEFDVR
TCDPCYKQLQTVERPSLASFNDAKHSIVYMDLDEDRKRLLTVGQDRLIKI
WDLSNIWA*
BS08807.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5168-PB | 408 | CG5168-PB | 1..408 | 1..408 | 2205 | 100 | Plus |
CG5168-PA | 408 | CG5168-PA | 1..408 | 1..408 | 2205 | 100 | Plus |