Clone Sequence Records
BS08811.3prime Sequence
942 bp (783 high quality bases) assembled on 2006-01-18
> BS08811.3prime
ATGGTCTAGAAAGCTTCTAAATCTCGTCCATGTAGCCATGCTCATAGGCG
TGACGAACGGTCTTGAAGATCTCCTGGTTCGCCTCATCGCCAGCGATGTC
CAAGGACAACTGGTGGAAGGCGGGGCCGTGCATATCCGTCTCGAAGAGGC
GGGACAACTCGGCGCAATCCTTCTCGGTGCCGAGCAGCCAGGGAAGGAAG
TGCATGCATACCATTGGTCCGTAGAAGGCATATCGTTTGAAGTGGGCATT
GAAGCGTTCGAAGCTGTATTCCTGTAGCAACTGGTCCACCCGATCGTCGG
TCAACTCGTTCCGGTTTCGGCGCAGAACCAGTTCCAACATTTCGATCATG
CTTCGATGGTACTTGCGCAACAAGTCGGCGTAGATCTCCTTCCTTCCTTC
GGATGGCGTGTTCATGTACATAAAGAAGCTCAGGTCAATGGCCGTAGTGC
TGAAGCGCAGCTCCTGGAAATCGATGGCTTTGATAGCGTCCACCTTATCT
TCAGCGCCGTAGTGGAACAGCACGTTGTTCCTGTTGTAGTCGCCGTGCAG
AAAGGTGGCAAAGTGGCTGTCCGGTTGATCTTCGGCAAAGGAGCTGGTGC
GGATTCTCTCCAGCAGGAGAGTTGGCTGCTTGAAGTACTTCTCCCGCAGT
CGCTCGATGGCGGCCCCGAATCCGGGGTCTGCCCCCTGGAGGAGCTGCTC
CTTTTGCCGGTCGTAGAACTCGTAGAACCGATCGAAAGCCACGCGATAGA
GGACATCAAAGATGCCCTTTCCTGAGCTGGACACGAAGGGCATGTCCACC
ACTCCGGCGCGCAAACGAGCATGAACGTTCGGCTGGAGGATTTTCGTGGC
GTAACCCAGAGCATGGAACGGACCCACTAGTCCTACCATGGCCTCCAGCT
GATCCCGTCGAAAGGTTAGCCTTGGCCCCCAATTGGTAGCCA
BS08811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5126-PA | 1368 | CG5126-RA | 456..1368 | 929..17 | 4515 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:25:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5126-RA | 1667 | CG5126-RA | 545..1470 | 942..16 | 4580 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1182494..1183419 | 16..942 | 4555 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:25:17 has no hits.
BS08811.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:44 Download gff for
BS08811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5126-PA | 445..1368 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:54 Download gff for
BS08811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5126-PA | 445..1368 | 17..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:27:32 Download gff for
BS08811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5126-RA | 546..1470 | 16..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:37:40 Download gff for
BS08811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5126-RA | 546..1470 | 16..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:37:40 Download gff for
BS08811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1182494..1183418 | 16..941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:27:32 Download gff for
BS08811.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1182494..1183418 | 16..941 | 99 | | Plus |
BS08811.5prime Sequence
880 bp (815 high quality bases) assembled on 2006-01-18
> BS08811.5prime
GAAGTTATCAGTCGACATGTCGACGCAACAGCAGCAGTTAGACTATATAG
AGCGCCACCTGGTGTACGACATCTTCAAGAACTTTGGTCCGAGTGCTTCG
CTGGAATCGCACAGCGTTGAGTGCTCCAATGGACTGGACGGCTTCATGTC
CGCCTTGTACACCGTTACGCTGGACGTGGTCATCGCCGAGCGCAAGCGGA
CGGAGGTCGTCCTGGTCAAATTCATGAAGGGAACGGAAGAGTTCCGGGAG
AGCAGCAACTCGTACATCCAGTTTTCCAACGAGATCTTCGCCTACGCCGA
GATCCTGCCCGCCTATGAGAATGTGCTTCGGACGAGTCACCTGGAAAGCG
AAGTGGTAAAGAACTGGGTTCCCTGTTGCTACTTCGCCAGGTTTGGCCAC
GTTGAAGGTTTAGGGAATGGTAGGGAATCGGTGCTGGCCCTAAAGCATCT
CAAGGGCGATGGCTACCAATTGGGGCCAAGGCTAACCCTTCGACGGGATC
AGCTGGAGGCCATGGTAGGACTAGTGGGTCCGTTCCATGCTCTGGGCTAC
GCCACGAAAATCCTCCAGCCGAACGTTCATGCTCGTTTGCGCGCCGGAGT
GGTGGACATGCCCTTCGTGTCCAGCTCAGGAAAGGGCATCTTTGATGTCC
TCTATCGCGTGGCTTTCGATCGGTTCTACGAGTTCTACGACCGGCAAAAG
GAGCAGCTCCTCCAGGGGGCAGACCCCGGATTCGGGGCCGCCATCGAGCG
ACTGCGGGAGAAGTACTTCAAGCAGCCAACTCTCCTGCTGGAGAGAATCC
GCACCAGCTCCTTTGCCGAAGATCAACCGGACAGCCACTTTGCCACCTTT
CTGCACGGCGACTACAACAGGAACAACGTG
BS08811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5126-PA | 1368 | CG5126-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5126-RA | 1667 | CG5126-RA | 102..965 | 17..880 | 4320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1182999..1183473 | 880..406 | 2375 | 100 | Minus |
| 2L | 23513712 | 2L | 1183527..1183919 | 409..17 | 1965 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 04:02:52 has no hits.
BS08811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:45 Download gff for
BS08811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5126-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:56 Download gff for
BS08811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5126-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:59:09 Download gff for
BS08811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5126-RA | 96..965 | 11..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:34:05 Download gff for
BS08811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5126-RA | 96..965 | 11..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:34:05 Download gff for
BS08811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1182999..1183471 | 408..880 | 100 | <- | Minus |
| 2L | 1183529..1183925 | 11..407 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:59:09 Download gff for
BS08811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1182999..1183471 | 408..880 | 100 | <- | Minus |
| arm_2L | 1183529..1183925 | 11..407 | 99 | | Minus |
BS08811.complete Sequence
1400 bp (1400 high quality bases) assembled on 2006-01-25
> BS08811.complete
GAAGTTATCAGTCGACATGTCGACGCAACAGCAGCAGTTAGACTATATAG
AGCGCCACCTGGTGTACGACATCTTCAAGAACTTTGGTCCGAGTGCTTCG
CTGGAATCGCACAGCGTTGAGTGCTCCAATGGACTGGACGGCTTCATGTC
CGCCTTGTACACCGTTACGCTGGACGTGGTCATCGCCGAGCGCAAGCGGA
CGGAGGTCGTCCTGGTCAAATTCATGAAGGGAACGGAAGAGTTCCGGGAG
AGCAGCAACTCGTACATCCAGTTTTCCAACGAGATCTTCGCCTACGCCGA
GATCCTGCCCGCCTATGAGAATGTGCTTCGGACGAGTCACCTGGAAAGCG
AAGTGGTAAAGAACTGGGTTCCCTGTTGCTACTTCGCCAGGTTTGGCCAC
GTTGAAGGTTTAGGGAATGGTAGGGAATCGGTGCTGGCCCTAAAGCATCT
CAAGGGCGATGGCTACCAATTGGGGCCAAGGCTAACCCTTCGACGGGATC
AGCTGGAGGCCATGGTAGGACTAGTGGGTCCGTTCCATGCTCTGGGCTAC
GCCACGAAAATCCTCCAGCCGAACGTTCATGCTCGTTTGCGCGCCGGAGT
GGTGGACATGCCCTTCGTGTCCAGCTCAGGAAAGGGCATCTTTGATGTCC
TCTATCGCGTGGCTTTCGATCGGTTCTACGAGTTCTACGACCGGCAAAAG
GAGCAGCTCCTCCAGGGGGCAGACCCCGGATTCGGGGCCGCCATCGAGCG
ACTGCGGGAGAAGTACTTCAAGCAGCCAACTCTCCTGCTGGAGAGAATCC
GCACCAGCTCCTTTGCCGAAGATCAACCGGACAGCCACTTTGCCACCTTT
CTGCACGGCGACTACAACAGGAACAACGTGCTGTTCCACTACGGCGCTGA
AGATAAGGTGGACGCTATCAAAGCCATCGATTTCCAGGAGCTGCGCTTCA
GCACTACGGCCATTGACCTGAGCTTCTTTATGTACATGAACACGCCATCC
GAAGGAAGGAAGGAGATCTACGCCGACTTGTTGCGCAAGTACCATCGAAG
CATGATCGAAATGTTGGAACTGGTTCTGCGCCGAAACCGGAACGAGTTGA
CCGACGATCGGGTGGACCAGTTGCTACAGGAATACAGCTTCGAACGCTTC
AATGCCCACTTCAAACGATATGCCTTCTACGGACCAATGGTATGCATGCA
CTTCCTTCCCTGGCTGCTCGGCACCGAGAAGGATTGCGCCGAGTTGTCCC
GCCTCTTCGAGACGGATATGCACGGCCCCGCCTTCCACCAGTTGTCCTTG
GACATCGCTGGCGATGAGGCGAACCAGGAGATCTTCAAGACCGTTCGTCA
CGCCTATGAGCATGGCTACATGGACGAGATTTAGAAGCTTTCTAGACCAT
BS08811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5126-RA | 1368 | CG5126-PA | 1..1368 | 17..1384 | 6840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5126-RA | 1667 | CG5126-RA | 102..1470 | 17..1385 | 6845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1182494..1183473 | 1385..406 | 4900 | 100 | Minus |
| 2L | 23513712 | 2L | 1183527..1183919 | 409..17 | 1965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:21:26 has no hits.
BS08811.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:17 Download gff for
BS08811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5126-RA | 1..1368 | 17..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:30 Download gff for
BS08811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5126-RA | 97..1471 | 11..1385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:43 Download gff for
BS08811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5126-RA | 102..1469 | 17..1384 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:17 Download gff for
BS08811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5126-RA | 97..1471 | 11..1385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:42 Download gff for
BS08811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5126-RA | 102..1469 | 17..1384 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:42 Download gff for
BS08811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1182495..1183471 | 408..1384 | 100 | <- | Minus |
| 2L | 1183529..1183919 | 17..407 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:43 Download gff for
BS08811.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1182495..1183471 | 408..1384 | 100 | <- | Minus |
| arm_2L | 1183529..1183919 | 17..407 | 100 | | Minus |
BS08811.pep Sequence
Translation from 16 to 1383
> BS08811.pep
MSTQQQQLDYIERHLVYDIFKNFGPSASLESHSVECSNGLDGFMSALYTV
TLDVVIAERKRTEVVLVKFMKGTEEFRESSNSYIQFSNEIFAYAEILPAY
ENVLRTSHLESEVVKNWVPCCYFARFGHVEGLGNGRESVLALKHLKGDGY
QLGPRLTLRRDQLEAMVGLVGPFHALGYATKILQPNVHARLRAGVVDMPF
VSSSGKGIFDVLYRVAFDRFYEFYDRQKEQLLQGADPGFGAAIERLREKY
FKQPTLLLERIRTSSFAEDQPDSHFATFLHGDYNRNNVLFHYGAEDKVDA
IKAIDFQELRFSTTAIDLSFFMYMNTPSEGRKEIYADLLRKYHRSMIEML
ELVLRRNRNELTDDRVDQLLQEYSFERFNAHFKRYAFYGPMVCMHFLPWL
LGTEKDCAELSRLFETDMHGPAFHQLSLDIAGDEANQEIFKTVRHAYEHG
YMDEI*
BS08811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5126-PA | 455 | CG5126-PA | 1..455 | 1..455 | 2384 | 100 | Plus |
| CG11893-PA | 416 | CG11893-PA | 20..416 | 10..455 | 211 | 20.8 | Plus |
| CG31300-PA | 422 | CG31300-PA | 20..339 | 10..353 | 203 | 21.9 | Plus |
| CG2004-PG | 425 | CG2004-PG | 44..424 | 41..452 | 179 | 24.1 | Plus |
| CG2004-PF | 425 | CG2004-PF | 44..424 | 41..452 | 179 | 24.1 | Plus |
