Clone Sequence Records
BS08812.complete Sequence
1628 bp assembled on 2009-12-07
GenBank Submission: KX800985
> BS08812.complete
GAAGTTATCAGTCGACATGTACGTGAGACGAGCTCTGCTCTTGGCCTGCC
TGCTGTGCCTCCAGCCGCTGGGTCCATCTATGGCCAGCGAGGATGAGTCC
AATCCGCTGCTGGACATGGCCTCCATGTTCTTCCAGGAGGCGCTGTCCAA
CCAGAACGGTGGCAACAATGGAGGAGGCGGTGCTGGTTTGGCGGGTGTGG
CCTCGCTAATTGGCACCTTCATGCAAGCGAGTGGCAAATCTGGAGGCGCC
GGAGCAGGAGGCGGCGGTGCTGGTGGCGCCATGCAGATCCTCTCGGGCCT
GGGCAGTCTTCTGTCCAAGAGTCAGGGCGGTCAGAGCGGTGGCTTCGATC
CCTCCATCATTGGCAATGTCCTCGAGATGTTCACCCAGGGCGATGACGAG
GAAGCCACTCCACAGCAAAAGCGCAGCAATGGCGGTGGCTCTGAATCTGG
CATTGGTCTGGATACCATACTGCAAGTGGCATCCGCCTTCATGAACACCC
AGGGCAACGATAAGGCCACACATCATCACCAGCAGAAGCGATCCACCGCC
ACGGAACCGGAATCCGAGAACGGACTGATGAACCTTCTGCCACTGGTCAT
GCAGGCGGTTAGCTCCTTTGCCGGTCCCGAGGGTCAGAGCACCCAGGAGA
AGCACAAGAGCCACGCCTGGGTGCTGCCCCCATTCCTGGAGCACATTCAC
GTGCTGTGGGATCACTTCTCCAACTCCGAGCTGGCTGATGCGTTGTACGA
GAAGTCCGGAGTTAACAAAATCATGAAGGGCTTCAAGGGTTCCGATGGCA
AGCTGGACTATGATAAGCTCTTCGAGTCGCTGAATAACCAATCCTTCCGT
CGCCGCTGGATCAAGTCGGCCACACTCTACCTGGCCGACTGGGCCAGCTA
CCTGGCCAATCCCGAGGTGTATCTCAGGTACTTCCAGACGGCACAGATCA
TGTTTAACGGCTTGCTGAAGTCTCAAGGTTACCCCAAGCAGACCCACTTC
GATCCCTCCCGTCCGGGCGAGACCATCTCGAATCTCTTGGACCATGTGGC
CAAGCATCATCTGAACGTTAAGATCGATTCGAGGCAGTACGTCAAGCCAG
CCGTGGGCTATGCCAAGGAACTGCTAAAACTTGGCCAGGCACGCGGATTA
CTTCAGTTCAATGCCACCGAGATCAGCGACAAGCTAACGGATACGCTTAA
CCTGGAGGTTATTGAACCGGTGCTGAAAGTCCATCGCGCCTACAGATACA
TCTCCAAGTCGCCGCAATGCGATCGCTACGTGCTCTGTCAGCTGAATGCA
GCGGCTCTCGATCAGCAGGAGAAGCAGAGGCAGCACGACCAATACCAGCA
GCACCACCAGCCCAAGCAGAGCCAACTGAATCGCCCGACATCGGCGTCCA
GTCTAATTGCCGGAGTTAGTCCGAAAATCGTTAAGATCGGGAGCATGGGT
GCGGCAATCTTCATTAGCACGGAAACCGGTACGCCGTTCTGGACCCTCTT
CGGTGTGATCAATGCGCCATACAATTGCGAGGCCAAATATCCAGTCGACT
GCAATGGTTTCCACGAGGGCGAGGCCAAGGTGACCACGGAATATATCCAC
AACGAGTTGTAGAAGCTTTCTAGACCAT
BS08812.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8420-RA | 1596 | CG8420-PA | 1..1596 | 17..1612 | 7980 | 100 | Plus |
CG8420-RB | 663 | CG8420-PB | 1..663 | 950..1612 | 3315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8420-RA | 1959 | CG8420-RA | 226..1821 | 17..1612 | 7980 | 100 | Plus |
CG8420-RB | 1343 | CG8420-RB | 370..1205 | 777..1612 | 4180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9247674..9248436 | 17..779 | 3815 | 100 | Plus |
3R | 32079331 | 3R | 9250654..9250980 | 1206..1532 | 1635 | 100 | Plus |
3R | 32079331 | 3R | 9249917..9250201 | 925..1209 | 1425 | 100 | Plus |
3R | 32079331 | 3R | 9248823..9248975 | 777..929 | 765 | 100 | Plus |
3R | 32079331 | 3R | 9251211..9251293 | 1530..1612 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:04:59 has no hits.
BS08812.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:23 Download gff for
BS08812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8420-RA | 224..1819 | 17..1612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:27 Download gff for
BS08812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8420-RA | 226..1821 | 17..1612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:06 Download gff for
BS08812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8420-RA | 224..1819 | 17..1612 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:37 Download gff for
BS08812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8420-RA | 226..1821 | 17..1612 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:37 Download gff for
BS08812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9250656..9250979 | 1208..1531 | 100 | -> | Plus |
3R | 9251213..9251293 | 1532..1612 | 100 | | Plus |
3R | 9249920..9250199 | 928..1207 | 100 | -> | Plus |
3R | 9247674..9248435 | 17..778 | 100 | -> | Plus |
3R | 9248825..9248973 | 779..927 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:27 Download gff for
BS08812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5075642..5075921 | 928..1207 | 100 | -> | Plus |
arm_3R | 5076378..5076701 | 1208..1531 | 100 | -> | Plus |
arm_3R | 5076935..5077015 | 1532..1612 | 100 | | Plus |
arm_3R | 5073396..5074157 | 17..778 | 100 | -> | Plus |
arm_3R | 5074547..5074695 | 779..927 | 100 | -> | Plus |
BS08812.3prime Sequence
881 bp (806 high quality bases) assembled on 2006-01-18
> BS08812.3prime
ATGGTCTAGAAAGCTTCTACAACTCGTTGTGGATATATTCCGTGGTCACC
TTGGCCTCGCCCTCGTGGAAACCATTGCAGTCGACTGGATATTTGGCCTC
GCAATTGTATGGCGCATTGATCACACCGAAGAGGGTCCAGAACGGCGTAC
CGGTTTCCGTGCTAATGAAGATTGCCGCACCCATGCTCCCGATCTTAACG
ATTTTCGGACTAACTCCGGCAATTAGACTGGACGCCGATGTCGGGCGATT
CAGTTGGCTCTGCTTGGGCTGGTGGTGCTGCTGGTATTGGTCGTGCTGCC
TCTGCTTCTCCTGCTGATCGAGAGCCGCTGCATTCAGCTGACAGAGCACG
TAGCGATCGCATTGCGGCGACTTGGAGATGTATCTGTAGGCGCGATGGAC
TTTCAGCACCGGTTCAATAACCTCCAGGTTAAGCGTATCCGTTAGCTTGT
CGCTGATCTCGGTGGCATTGAACTGAAGTAATCCGCGTGCCTGGCCAAGT
TTTAGCAGTTCCTTGGCATAGCCCACGGCTGGCTTGACGTACTGCCTCGA
ATCGATCTTAACGTTCAGATGATGCTTGGCCACATGGTCCAAGAGATTCG
AGATGGTCTCGCCCGGACGGGAGGGATCGAAGTGGGTCTGCTTGGGGTAA
CCTTGAGACTTCAGCAAGCCGTTAAACATGATCTGTGCCGTCTGGAAGTA
CCTGAGATACACCTCGGGATTGGCCAGGTAGCTGGCCCAGTCGGCCAGGT
AGAGTGTGGCCGACTTGATCCAGCGGCGACGGAAGGATTGGTTATTCAGC
GACTCGAAGAGCTTATCATAGTCCAGCTTGCCATCGGAACCCTTGAAGCC
CTTCATGATTTTGTTAACTCCCGACTTCTCG
BS08812.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8420-PA | 1596 | CG8420-RA | 732..1596 | 881..17 | 4300 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8420-RA | 1959 | CG8420-RA | 957..1821 | 881..17 | 4310 | 99.9 | Minus |
CG8420-RB | 1343 | CG8420-RB | 370..1205 | 852..17 | 4180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9250654..9250980 | 423..97 | 1635 | 100 | Minus |
3R | 32079331 | 3R | 9249917..9250201 | 704..420 | 1425 | 100 | Minus |
3R | 32079331 | 3R | 9248823..9248975 | 852..700 | 765 | 100 | Minus |
3R | 32079331 | 3R | 9251211..9251293 | 99..17 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:03:47 has no hits.
BS08812.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:46 Download gff for
BS08812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8420-PA | 732..1596 | 17..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:57 Download gff for
BS08812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8420-PA | 732..1596 | 17..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:55:51 Download gff for
BS08812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8420-RA | 957..1825 | 11..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:48 Download gff for
BS08812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8420-RA | 957..1825 | 11..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:48 Download gff for
BS08812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9250656..9250979 | 98..421 | 100 | -> | Minus |
3R | 9251213..9251297 | 11..97 | 96 | | Minus |
3R | 9248405..9248435 | 851..881 | 96 | -> | Minus |
3R | 9248825..9248973 | 702..850 | 100 | -> | Minus |
3R | 9249920..9250199 | 422..701 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:55:51 Download gff for
BS08812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5074127..5074157 | 851..881 | 96 | -> | Minus |
arm_3R | 5074547..5074695 | 702..850 | 100 | -> | Minus |
arm_3R | 5075642..5075921 | 422..701 | 100 | -> | Minus |
arm_3R | 5076378..5076701 | 98..421 | 100 | -> | Minus |
arm_3R | 5076935..5077019 | 11..97 | 96 | | Minus |
BS08812.5prime Sequence
911 bp (755 high quality bases) assembled on 2006-01-18
> BS08812.5prime
GAAGTTATCAGTCGACATGTACGTGAGACGAGCTCTGCTCTTGGCCTGCC
TGCTGTGCCTCCAGCCGCTGGGTCCATCTATGGCCAGCGAGGATGAGTCC
AATCCGCTGCTGGACATGGCCTCCATGTTCTTCCAGGAGGCGCTGTCCAA
CCAGAACGGTGGCAACAATGGAGGAGGCGGTGCTGGTTTGGCGGGTGTGG
CCTCGCTAATTGGCACCTTCATGCAAGCGAGTGGCAAATCTGGAGGCGCC
GGAGCAGGAGGCGGCGGTGCTGGTGGCGCCATGCAGATCCTCTCGGGCCT
GGGCAGTCTTCTGTCCAAGAGTCAGGGCGGTCAGAGCGGTGGCTTCGATC
CCTCCATCATTGGCAATGTCCTCGAGATGTTCACCCAGGGCGATGACGAG
GAAGCCACTCCACAGCAAAAGCGCAGCAATGGCGGTGGCTCTGAATCTGG
CATTGGTCTGGATACCATACTGCAAGTGGCATCCGCCTTCATGAACACCC
AGGGCAACGATAAGGCCACACATCATCACCAGCAGAAGCGATCCACCGCC
ACGGAACCGGAATCCGAGAACGGACTGATGAACCTTCTGCCACTGGTCAT
GCAGGCGGTTAGCTCCTTTGCCGGTCCCGAGGGTCAGAGCACCCAGGAGA
AGCACAAGAGCCACGCCTGGGTGCTGCCCCCATTCCTGGAGCACATTCAC
GTGCTGTGGGATCACTTCTCCAACTCCGAGCTGGCTGATGCGTTGTACGA
GAAGTCCGGAGTTAACAAAATCATGAAGGGCTTCAGGGGTTCCGATGGCA
AGCTGGACTATGATAAGCTCTTCGAGTCGCTGAATAACCAATCCTTCCGT
CGCCGCTGGATCCAGTCGGCCACACTCTACCTGGCCGACTGGGCCAGCTA
CCTGGCCAATC
BS08812.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8420-PA | 1596 | CG8420-RA | 1..895 | 17..911 | 4425 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8420-RA | 1959 | CG8420-RA | 226..1120 | 17..911 | 4445 | 99.8 | Plus |
CG8420-RB | 1343 | CG8420-RB | 370..504 | 777..911 | 645 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9247674..9248436 | 17..779 | 3815 | 100 | Plus |
3R | 32079331 | 3R | 9248823..9248957 | 777..911 | 645 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:36:13 has no hits.
BS08812.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:47 Download gff for
BS08812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8420-PA | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:59 Download gff for
BS08812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8420-PA | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:35:53 Download gff for
BS08812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8420-RA | 220..1120 | 10..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:18:34 Download gff for
BS08812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8420-RA | 220..1120 | 10..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:18:34 Download gff for
BS08812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9247668..9248435 | 10..778 | 99 | -> | Plus |
3R | 9248825..9248957 | 779..911 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:35:53 Download gff for
BS08812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5073390..5074157 | 10..778 | 99 | -> | Plus |
arm_3R | 5074547..5074679 | 779..911 | 98 | | Plus |
BS08812.pep Sequence
Translation from 16 to 1611
> BS08812.pep
MYVRRALLLACLLCLQPLGPSMASEDESNPLLDMASMFFQEALSNQNGGN
NGGGGAGLAGVASLIGTFMQASGKSGGAGAGGGGAGGAMQILSGLGSLLS
KSQGGQSGGFDPSIIGNVLEMFTQGDDEEATPQQKRSNGGGSESGIGLDT
ILQVASAFMNTQGNDKATHHHQQKRSTATEPESENGLMNLLPLVMQAVSS
FAGPEGQSTQEKHKSHAWVLPPFLEHIHVLWDHFSNSELADALYEKSGVN
KIMKGFKGSDGKLDYDKLFESLNNQSFRRRWIKSATLYLADWASYLANPE
VYLRYFQTAQIMFNGLLKSQGYPKQTHFDPSRPGETISNLLDHVAKHHLN
VKIDSRQYVKPAVGYAKELLKLGQARGLLQFNATEISDKLTDTLNLEVIE
PVLKVHRAYRYISKSPQCDRYVLCQLNAAALDQQEKQRQHDQYQQHHQPK
QSQLNRPTSASSLIAGVSPKIVKIGSMGAAIFISTETGTPFWTLFGVINA
PYNCEAKYPVDCNGFHEGEAKVTTEYIHNEL*
BS08812.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8420-PA | 531 | CG8420-PA | 1..531 | 1..531 | 2775 | 100 | Plus |
CG8420-PB | 220 | CG8420-PB | 1..220 | 312..531 | 1160 | 100 | Plus |