Clone BS08812 Report

Search the DGRC for BS08812

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG8420-RA
Protein status:BS08812.pep: full length peptide match
Sequenced Size:1628

Clone Sequence Records

BS08812.complete Sequence

1628 bp assembled on 2009-12-07

GenBank Submission: KX800985

> BS08812.complete
GAAGTTATCAGTCGACATGTACGTGAGACGAGCTCTGCTCTTGGCCTGCC
TGCTGTGCCTCCAGCCGCTGGGTCCATCTATGGCCAGCGAGGATGAGTCC
AATCCGCTGCTGGACATGGCCTCCATGTTCTTCCAGGAGGCGCTGTCCAA
CCAGAACGGTGGCAACAATGGAGGAGGCGGTGCTGGTTTGGCGGGTGTGG
CCTCGCTAATTGGCACCTTCATGCAAGCGAGTGGCAAATCTGGAGGCGCC
GGAGCAGGAGGCGGCGGTGCTGGTGGCGCCATGCAGATCCTCTCGGGCCT
GGGCAGTCTTCTGTCCAAGAGTCAGGGCGGTCAGAGCGGTGGCTTCGATC
CCTCCATCATTGGCAATGTCCTCGAGATGTTCACCCAGGGCGATGACGAG
GAAGCCACTCCACAGCAAAAGCGCAGCAATGGCGGTGGCTCTGAATCTGG
CATTGGTCTGGATACCATACTGCAAGTGGCATCCGCCTTCATGAACACCC
AGGGCAACGATAAGGCCACACATCATCACCAGCAGAAGCGATCCACCGCC
ACGGAACCGGAATCCGAGAACGGACTGATGAACCTTCTGCCACTGGTCAT
GCAGGCGGTTAGCTCCTTTGCCGGTCCCGAGGGTCAGAGCACCCAGGAGA
AGCACAAGAGCCACGCCTGGGTGCTGCCCCCATTCCTGGAGCACATTCAC
GTGCTGTGGGATCACTTCTCCAACTCCGAGCTGGCTGATGCGTTGTACGA
GAAGTCCGGAGTTAACAAAATCATGAAGGGCTTCAAGGGTTCCGATGGCA
AGCTGGACTATGATAAGCTCTTCGAGTCGCTGAATAACCAATCCTTCCGT
CGCCGCTGGATCAAGTCGGCCACACTCTACCTGGCCGACTGGGCCAGCTA
CCTGGCCAATCCCGAGGTGTATCTCAGGTACTTCCAGACGGCACAGATCA
TGTTTAACGGCTTGCTGAAGTCTCAAGGTTACCCCAAGCAGACCCACTTC
GATCCCTCCCGTCCGGGCGAGACCATCTCGAATCTCTTGGACCATGTGGC
CAAGCATCATCTGAACGTTAAGATCGATTCGAGGCAGTACGTCAAGCCAG
CCGTGGGCTATGCCAAGGAACTGCTAAAACTTGGCCAGGCACGCGGATTA
CTTCAGTTCAATGCCACCGAGATCAGCGACAAGCTAACGGATACGCTTAA
CCTGGAGGTTATTGAACCGGTGCTGAAAGTCCATCGCGCCTACAGATACA
TCTCCAAGTCGCCGCAATGCGATCGCTACGTGCTCTGTCAGCTGAATGCA
GCGGCTCTCGATCAGCAGGAGAAGCAGAGGCAGCACGACCAATACCAGCA
GCACCACCAGCCCAAGCAGAGCCAACTGAATCGCCCGACATCGGCGTCCA
GTCTAATTGCCGGAGTTAGTCCGAAAATCGTTAAGATCGGGAGCATGGGT
GCGGCAATCTTCATTAGCACGGAAACCGGTACGCCGTTCTGGACCCTCTT
CGGTGTGATCAATGCGCCATACAATTGCGAGGCCAAATATCCAGTCGACT
GCAATGGTTTCCACGAGGGCGAGGCCAAGGTGACCACGGAATATATCCAC
AACGAGTTGTAGAAGCTTTCTAGACCAT

BS08812.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8420-RA 1596 CG8420-PA 1..1596 17..1612 7980 100 Plus
CG8420-RB 663 CG8420-PB 1..663 950..1612 3315 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8420-RA 1959 CG8420-RA 226..1821 17..1612 7980 100 Plus
CG8420-RB 1343 CG8420-RB 370..1205 777..1612 4180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9247674..9248436 17..779 3815 100 Plus
3R 32079331 3R 9250654..9250980 1206..1532 1635 100 Plus
3R 32079331 3R 9249917..9250201 925..1209 1425 100 Plus
3R 32079331 3R 9248823..9248975 777..929 765 100 Plus
3R 32079331 3R 9251211..9251293 1530..1612 415 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:04:59 has no hits.

BS08812.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:23 Download gff for BS08812.complete
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 224..1819 17..1612 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:27 Download gff for BS08812.complete
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 226..1821 17..1612 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:06 Download gff for BS08812.complete
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 224..1819 17..1612 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:37 Download gff for BS08812.complete
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 226..1821 17..1612 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:37 Download gff for BS08812.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9250656..9250979 1208..1531 100 -> Plus
3R 9251213..9251293 1532..1612 100   Plus
3R 9249920..9250199 928..1207 100 -> Plus
3R 9247674..9248435 17..778 100 -> Plus
3R 9248825..9248973 779..927 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:27 Download gff for BS08812.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5075642..5075921 928..1207 100 -> Plus
arm_3R 5076378..5076701 1208..1531 100 -> Plus
arm_3R 5076935..5077015 1532..1612 100   Plus
arm_3R 5073396..5074157 17..778 100 -> Plus
arm_3R 5074547..5074695 779..927 100 -> Plus

BS08812.3prime Sequence

881 bp (806 high quality bases) assembled on 2006-01-18

> BS08812.3prime
ATGGTCTAGAAAGCTTCTACAACTCGTTGTGGATATATTCCGTGGTCACC
TTGGCCTCGCCCTCGTGGAAACCATTGCAGTCGACTGGATATTTGGCCTC
GCAATTGTATGGCGCATTGATCACACCGAAGAGGGTCCAGAACGGCGTAC
CGGTTTCCGTGCTAATGAAGATTGCCGCACCCATGCTCCCGATCTTAACG
ATTTTCGGACTAACTCCGGCAATTAGACTGGACGCCGATGTCGGGCGATT
CAGTTGGCTCTGCTTGGGCTGGTGGTGCTGCTGGTATTGGTCGTGCTGCC
TCTGCTTCTCCTGCTGATCGAGAGCCGCTGCATTCAGCTGACAGAGCACG
TAGCGATCGCATTGCGGCGACTTGGAGATGTATCTGTAGGCGCGATGGAC
TTTCAGCACCGGTTCAATAACCTCCAGGTTAAGCGTATCCGTTAGCTTGT
CGCTGATCTCGGTGGCATTGAACTGAAGTAATCCGCGTGCCTGGCCAAGT
TTTAGCAGTTCCTTGGCATAGCCCACGGCTGGCTTGACGTACTGCCTCGA
ATCGATCTTAACGTTCAGATGATGCTTGGCCACATGGTCCAAGAGATTCG
AGATGGTCTCGCCCGGACGGGAGGGATCGAAGTGGGTCTGCTTGGGGTAA
CCTTGAGACTTCAGCAAGCCGTTAAACATGATCTGTGCCGTCTGGAAGTA
CCTGAGATACACCTCGGGATTGGCCAGGTAGCTGGCCCAGTCGGCCAGGT
AGAGTGTGGCCGACTTGATCCAGCGGCGACGGAAGGATTGGTTATTCAGC
GACTCGAAGAGCTTATCATAGTCCAGCTTGCCATCGGAACCCTTGAAGCC
CTTCATGATTTTGTTAACTCCCGACTTCTCG

BS08812.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8420-PA 1596 CG8420-RA 732..1596 881..17 4300 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG8420-RA 1959 CG8420-RA 957..1821 881..17 4310 99.9 Minus
CG8420-RB 1343 CG8420-RB 370..1205 852..17 4180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9250654..9250980 423..97 1635 100 Minus
3R 32079331 3R 9249917..9250201 704..420 1425 100 Minus
3R 32079331 3R 9248823..9248975 852..700 765 100 Minus
3R 32079331 3R 9251211..9251293 99..17 415 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:03:47 has no hits.

BS08812.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:46 Download gff for BS08812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8420-PA 732..1596 17..881 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:57 Download gff for BS08812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8420-PA 732..1596 17..881 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:55:51 Download gff for BS08812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 957..1825 11..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:48 Download gff for BS08812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 957..1825 11..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:48 Download gff for BS08812.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9250656..9250979 98..421 100 -> Minus
3R 9251213..9251297 11..97 96   Minus
3R 9248405..9248435 851..881 96 -> Minus
3R 9248825..9248973 702..850 100 -> Minus
3R 9249920..9250199 422..701 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:55:51 Download gff for BS08812.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5074127..5074157 851..881 96 -> Minus
arm_3R 5074547..5074695 702..850 100 -> Minus
arm_3R 5075642..5075921 422..701 100 -> Minus
arm_3R 5076378..5076701 98..421 100 -> Minus
arm_3R 5076935..5077019 11..97 96   Minus

BS08812.5prime Sequence

911 bp (755 high quality bases) assembled on 2006-01-18

> BS08812.5prime
GAAGTTATCAGTCGACATGTACGTGAGACGAGCTCTGCTCTTGGCCTGCC
TGCTGTGCCTCCAGCCGCTGGGTCCATCTATGGCCAGCGAGGATGAGTCC
AATCCGCTGCTGGACATGGCCTCCATGTTCTTCCAGGAGGCGCTGTCCAA
CCAGAACGGTGGCAACAATGGAGGAGGCGGTGCTGGTTTGGCGGGTGTGG
CCTCGCTAATTGGCACCTTCATGCAAGCGAGTGGCAAATCTGGAGGCGCC
GGAGCAGGAGGCGGCGGTGCTGGTGGCGCCATGCAGATCCTCTCGGGCCT
GGGCAGTCTTCTGTCCAAGAGTCAGGGCGGTCAGAGCGGTGGCTTCGATC
CCTCCATCATTGGCAATGTCCTCGAGATGTTCACCCAGGGCGATGACGAG
GAAGCCACTCCACAGCAAAAGCGCAGCAATGGCGGTGGCTCTGAATCTGG
CATTGGTCTGGATACCATACTGCAAGTGGCATCCGCCTTCATGAACACCC
AGGGCAACGATAAGGCCACACATCATCACCAGCAGAAGCGATCCACCGCC
ACGGAACCGGAATCCGAGAACGGACTGATGAACCTTCTGCCACTGGTCAT
GCAGGCGGTTAGCTCCTTTGCCGGTCCCGAGGGTCAGAGCACCCAGGAGA
AGCACAAGAGCCACGCCTGGGTGCTGCCCCCATTCCTGGAGCACATTCAC
GTGCTGTGGGATCACTTCTCCAACTCCGAGCTGGCTGATGCGTTGTACGA
GAAGTCCGGAGTTAACAAAATCATGAAGGGCTTCAGGGGTTCCGATGGCA
AGCTGGACTATGATAAGCTCTTCGAGTCGCTGAATAACCAATCCTTCCGT
CGCCGCTGGATCCAGTCGGCCACACTCTACCTGGCCGACTGGGCCAGCTA
CCTGGCCAATC

BS08812.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8420-PA 1596 CG8420-RA 1..895 17..911 4425 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8420-RA 1959 CG8420-RA 226..1120 17..911 4445 99.8 Plus
CG8420-RB 1343 CG8420-RB 370..504 777..911 645 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9247674..9248436 17..779 3815 100 Plus
3R 32079331 3R 9248823..9248957 777..911 645 98.5 Plus
Blast to na_te.dros performed on 2015-02-10 23:36:13 has no hits.

BS08812.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:47 Download gff for BS08812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8420-PA 1..895 17..911 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:53:59 Download gff for BS08812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8420-PA 1..895 17..911 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:35:53 Download gff for BS08812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 220..1120 10..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:18:34 Download gff for BS08812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8420-RA 220..1120 10..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:18:34 Download gff for BS08812.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9247668..9248435 10..778 99 -> Plus
3R 9248825..9248957 779..911 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:35:53 Download gff for BS08812.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5073390..5074157 10..778 99 -> Plus
arm_3R 5074547..5074679 779..911 98   Plus

BS08812.pep Sequence

Translation from 16 to 1611

> BS08812.pep
MYVRRALLLACLLCLQPLGPSMASEDESNPLLDMASMFFQEALSNQNGGN
NGGGGAGLAGVASLIGTFMQASGKSGGAGAGGGGAGGAMQILSGLGSLLS
KSQGGQSGGFDPSIIGNVLEMFTQGDDEEATPQQKRSNGGGSESGIGLDT
ILQVASAFMNTQGNDKATHHHQQKRSTATEPESENGLMNLLPLVMQAVSS
FAGPEGQSTQEKHKSHAWVLPPFLEHIHVLWDHFSNSELADALYEKSGVN
KIMKGFKGSDGKLDYDKLFESLNNQSFRRRWIKSATLYLADWASYLANPE
VYLRYFQTAQIMFNGLLKSQGYPKQTHFDPSRPGETISNLLDHVAKHHLN
VKIDSRQYVKPAVGYAKELLKLGQARGLLQFNATEISDKLTDTLNLEVIE
PVLKVHRAYRYISKSPQCDRYVLCQLNAAALDQQEKQRQHDQYQQHHQPK
QSQLNRPTSASSLIAGVSPKIVKIGSMGAAIFISTETGTPFWTLFGVINA
PYNCEAKYPVDCNGFHEGEAKVTTEYIHNEL*

BS08812.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8420-PA 531 CG8420-PA 1..531 1..531 2775 100 Plus
CG8420-PB 220 CG8420-PB 1..220 312..531 1160 100 Plus