Clone Sequence Records
BS08813.3prime Sequence
929 bp (844 high quality bases) assembled on 2006-01-18
> BS08813.3prime
ATGGTCTAGAAAGCTTTCAAAGCGGCTCCTGCGCATCCGTTGGGGCTATC
GTCAGGTCATCGTCTGAAGTTCTCGTCACCTTCTGGTGGTCCTGCGGGGC
GATGTGCTCCTCAAAAAGCTTGGCCCTGGCTCGGCGGGATTTGATGAAGA
TCCCGTGACCAGGACAATCGCGATCGTTGTTGTAGCACCTGTCCTTGCAG
CACACGCGGCACAGCTGGAACTCGCACTTGGATCCCTGGGGATTGGCGCA
TTCCGAGCAGTATTCCAGGCGCCTCTCGTGCCGATGCTGGATCTGGGCCT
CCGTTTTGTTGGGTCTTCGCTGGCGTCTTCGAAGTTTCTTCATCCGTTTG
CGGGAGATCTCCTTGCCGTCCTTGTCGAAGTACTGCCGCTTGGTTCGGTT
GGGATCCTCAGCCTCGCGCACCTTTTCGGCAATCTTCTGGCGATGGGATT
CGGGTGAGGCGCGTATATATGGTTGACACAGCCAGGGAGAAAGTGGCAGA
TCTTCCTCTGATCCAGCAGCCATTTGTTCGGGCTCGTATGGCACCTCGCC
CTTGTGGAACGGCTCGTATTTTGCCCGTACTTGTTGCACGACGGCTTGGA
ATTGCACGAGCTGATTTGCAGTGGCTAGGTATTGCCGTAACTCAGAGTTC
TGCCGGATATTCATGATGTGATGGAAGAGCTTGAAGAGATGTCCTCGTAT
AAAGGAACTCGGGCACGGATGGAGCTGAACGAGCTCCAAGTACTCATGGG
CCATTTGCCAGACGGGCGGTGAGACTCCTTTAAAGATGGCCGGATTGTGC
AGATTACCCTCGGCGCTCATTACACCATCGACTCCTGTTTCAGTCAGACA
ACGATGAACGTCGTCCAGGGCCAGGATGTTTCCGTTGGCAAGCATTGGAA
TCTTGATGTGCTGGCGCACATTCTTAATG
BS08813.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3645-PA | 1518 | CG3645-RA | 606..1518 | 929..17 | 4565 | 100 | Minus |
CG3645-PB | 1518 | CG3645-RB | 606..1518 | 929..17 | 4565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3645-RC | 1799 | CG3645-RC | 813..1725 | 929..17 | 4565 | 100 | Minus |
CG3645-RB | 1753 | CG3645-RB | 767..1679 | 929..17 | 4565 | 100 | Minus |
CG3645-RA | 1726 | CG3645-RA | 740..1652 | 929..17 | 4565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 252663..253145 | 17..499 | 2415 | 100 | Plus |
2L | 23513712 | 2L | 253446..253709 | 666..929 | 1320 | 100 | Plus |
2L | 23513712 | 2L | 253220..253385 | 500..665 | 830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 06:47:30 has no hits.
BS08813.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:48 Download gff for
BS08813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3645-PB | 606..1518 | 17..929 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:00 Download gff for
BS08813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3645-PB | 606..1518 | 17..929 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:27 Download gff for
BS08813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3645-RA | 740..1656 | 11..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:38:03 Download gff for
BS08813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3645-RA | 740..1656 | 11..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:03 Download gff for
BS08813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 252659..253145 | 11..499 | 99 | <- | Plus |
2L | 253220..253385 | 500..665 | 100 | <- | Plus |
2L | 253446..253709 | 666..929 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:27 Download gff for
BS08813.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 252659..253145 | 11..499 | 99 | <- | Plus |
arm_2L | 253220..253385 | 500..665 | 100 | <- | Plus |
arm_2L | 253446..253709 | 666..929 | 100 | | Plus |
BS08813.5prime Sequence
945 bp (792 high quality bases) assembled on 2006-01-18
> BS08813.5prime
GAAGTTATCAGTCGACATGGTGAACGATGAAGACGCCGCGCACCAAAGAC
CTAGCAAGCCCACCGGATACAACTTCTACCGCTCCTCCTTGGGATCCCCG
CGTTATGTAGTGGCTCCCATGGTGGATCAAAGCGAGCTGGCCTGGCGAAT
GCTGTGCCGACGCTATGGCGCCGAACTCTGCTACTCGCCAATGTACCATG
CGAACCTCTTCGCCACAGACCCCAAGTATCGCAAGGATGCCTTGCAGACG
TGTCCCGAGGACAGGCCATTGATCATCCAGTTCTGTGGCAACGATGCTCA
ACAAATCCTGGATGCAGCACTCCTGGCGCAGGACCACTGCGACGCGGTGG
ACATAAATTTGGGTTGTCCCCAGGCCATTGCCAAGAGAGGTCACTACGGA
TCCTTCCTGCAGGATGAGTGGGAGCTGCTGACAGAGATTGTGAGCACACT
GCACGCAAAACTAGCCGTTCCTGTAACTTGCAAGATTCGCATCTTCGAGG
ACCTTGAGAAGACCATTAGGTATGCCAAGATGCTGGAGGCGGCCGGCTGC
CAGCTTCTGACTGTCCACGGTAGGACCAGAGAGCAGAAGGGTCCGCTGAC
CGGGGTGGCTAATTGGAACTACATTAAGAATGTGCGCCAGCACATCAAGA
TTCCAATGCTTGCCAACGGAAACATCCTGGCCCTGGACGACGTTCATCGT
TGTCTGACTGAAACAGGAGTCGATGGTGTAATGAGCGCCGAGGGTAATCT
GCACAATCCGGCCATCTTTAAAGGAGTCTCACCGCCCGTCTGGCAAATGG
CCCATGAGTACTTGGAGCTCGTTCAGCTCCATCCGTGCCCGAGTTCCTTT
ATACGAGGACATCTCTTCAAGCTCTTCCATCACATCATGAATATCCGGCA
GAACTCTGAGTTACGGCAATACCTAGCCACTGCAAATCAGCTCGT
BS08813.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3645-PA | 1518 | CG3645-RA | 1..929 | 17..945 | 4645 | 100 | Plus |
CG3645-PB | 1518 | CG3645-RB | 1..929 | 17..945 | 4645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3645-RC | 1799 | CG3645-RC | 207..1136 | 16..945 | 4650 | 100 | Plus |
CG3645-RB | 1753 | CG3645-RB | 161..1090 | 16..945 | 4650 | 100 | Plus |
CG3645-RA | 1726 | CG3645-RA | 134..1063 | 16..945 | 4650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 253446..253891 | 885..440 | 2230 | 100 | Minus |
2L | 23513712 | 2L | 253956..254380 | 440..16 | 2125 | 100 | Minus |
2L | 23513712 | 2L | 253326..253385 | 945..886 | 300 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 09:20:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 2782..2824 | 90..47 | 118 | 77.3 | Minus |
BS08813.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:49 Download gff for
BS08813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3645-PB | 1..929 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:01 Download gff for
BS08813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3645-PB | 1..929 | 17..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:22:53 Download gff for
BS08813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3645-RA | 134..1063 | 16..945 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:58 Download gff for
BS08813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3645-RA | 134..1063 | 16..945 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:58 Download gff for
BS08813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 253326..253385 | 886..945 | 100 | <- | Minus |
2L | 253446..253890 | 441..885 | 100 | <- | Minus |
2L | 253956..254380 | 16..440 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:22:53 Download gff for
BS08813.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 253326..253385 | 886..945 | 100 | <- | Minus |
arm_2L | 253446..253890 | 441..885 | 100 | <- | Minus |
arm_2L | 253956..254380 | 16..440 | 100 | | Minus |
BS08813.complete Sequence
1550 bp (1550 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636273
> BS08813.complete
GAAGTTATCAGTCGACATGGTGAACGATGAAGACGCCGCGCACCAAAGAC
CTAGCAAGCCCACCGGATACAACTTCTACCGCTCCTCCTTGGGATCCCCG
CGTTATGTAGTGGCTCCCATGGTGGATCAAAGCGAGCTGGCCTGGCGAAT
GCTGTGCCGACGCTATGGCGCCGAACTCTGCTACTCGCCAATGTACCATG
CGAACCTCTTCGCCACAGACCCCAAGTATCGCAAGGATGCCTTGCAGACG
TGTCCCGAGGACAGGCCATTGATCATCCAGTTCTGTGGCAACGATGCTCA
ACAAATCCTGGATGCAGCACTCCTGGCGCAGGACCACTGCGACGCGGTGG
ACATAAATTTGGGTTGTCCCCAGGCCATTGCCAAGAGAGGTCACTACGGA
TCCTTCCTGCAGGATGAGTGGGAGCTGCTGACAGAGATTGTGAGCACACT
GCACGCAAAACTAGCCGTTCCTGTAACTTGCAAGATTCGCATCTTCGAGG
ACCTTGAGAAGACCATTAGGTATGCCAAGATGCTGGAGGCGGCCGGCTGC
CAGCTTCTGACTGTCCACGGTAGGACCAGAGAGCAGAAGGGTCCGCTGAC
CGGGGTGGCTAATTGGAACTACATTAAGAATGTGCGCCAGCACATCAAGA
TTCCAATGCTTGCCAACGGAAACATCCTGGCCCTGGACGACGTTCATCGT
TGTCTGACTGAAACAGGAGTCGATGGTGTAATGAGCGCCGAGGGTAATCT
GCACAATCCGGCCATCTTTAAAGGAGTCTCACCGCCCGTCTGGCAAATGG
CCCATGAGTACTTGGAGCTCGTTCAGCTCCATCCGTGCCCGAGTTCCTTT
ATACGAGGACATCTCTTCAAGCTCTTCCATCACATCATGAATATCCGGCA
GAACTCTGAGTTACGGCAATACCTAGCCACTGCAAATCAGCTCGTGCAAT
TCCAAGCCGTCGTGCAACAAGTACGGGCAAAATACGAGCCGTTCCACAAG
GGCGAGGTGCCATACGAGCCCGAACAAATGGCTGCTGGATCAGAGGAAGA
TCTGCCACTTTCTCCCTGGCTGTGTCAACCATATATACGCGCCTCACCCG
AATCCCATCGCCAGAAGATTGCCGAAAAGGTGCGCGAGGCTGAGGATCCC
AACCGAACCAAGCGGCAGTACTTCGACAAGGACGGCAAGGAGATCTCCCG
CAAACGGATGAAGAAACTTCGAAGACGCCAGCGAAGACCCAACAAAACGG
AGGCCCAGATCCAGCATCGGCACGAGAGGCGCCTGGAATACTGCTCGGAA
TGCGCCAATCCCCAGGGATCCAAGTGCGAGTTCCAGCTGTGCCGCGTGTG
CTGCAAGGACAGGTGCTACAACAACGATCGCGATTGTCCTGGTCACGGGA
TCTTCATCAAATCCCGCCGAGCCAGGGCCAAGCTTTTTGAGGAGCACATC
GCCCCGCAGGACCACCAGAAGGTGACGAGAACTTCAGACGATGACCTGAC
GATAGCCCCAACGGATGCGCAGGAGCCGCTTTGAAAGCTTTCTAGACCAT
BS08813.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3645-RC | 1518 | CG3645-PC | 1..1518 | 17..1534 | 7590 | 100 | Plus |
CG3645-RB | 1518 | CG3645-PB | 1..1518 | 17..1534 | 7590 | 100 | Plus |
CG3645-RA | 1518 | CG3645-PA | 1..1518 | 17..1534 | 7590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:42:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3645-RC | 1799 | CG3645-RC | 207..1725 | 16..1534 | 7595 | 100 | Plus |
CG3645-RB | 1753 | CG3645-RB | 161..1679 | 16..1534 | 7595 | 100 | Plus |
CG3645-RA | 1726 | CG3645-RA | 134..1652 | 16..1534 | 7595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 252663..253145 | 1534..1052 | 2415 | 100 | Minus |
2L | 23513712 | 2L | 253446..253891 | 885..440 | 2230 | 100 | Minus |
2L | 23513712 | 2L | 253956..254380 | 440..16 | 2125 | 100 | Minus |
2L | 23513712 | 2L | 253220..253385 | 1051..886 | 830 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 19:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 2782..2824 | 90..47 | 118 | 77.3 | Minus |
BS08813.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:06 Download gff for
BS08813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3645-RB | 1..1518 | 17..1534 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:18 Download gff for
BS08813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3645-RB | 149..1671 | 16..1540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:20 Download gff for
BS08813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3645-RA | 135..1651 | 17..1533 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:07 Download gff for
BS08813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3645-RB | 149..1671 | 16..1540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:46 Download gff for
BS08813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3645-RA | 135..1651 | 17..1533 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:46 Download gff for
BS08813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 252664..253145 | 1052..1533 | 100 | <- | Minus |
2L | 253220..253385 | 886..1051 | 100 | <- | Minus |
2L | 253446..253890 | 441..885 | 100 | <- | Minus |
2L | 253956..254379 | 17..440 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:20 Download gff for
BS08813.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 252664..253145 | 1052..1533 | 100 | <- | Minus |
arm_2L | 253220..253385 | 886..1051 | 100 | <- | Minus |
arm_2L | 253446..253890 | 441..885 | 100 | <- | Minus |
arm_2L | 253956..254379 | 17..440 | 100 | | Minus |
BS08813.pep Sequence
Translation from 16 to 1533
> BS08813.pep
MVNDEDAAHQRPSKPTGYNFYRSSLGSPRYVVAPMVDQSELAWRMLCRRY
GAELCYSPMYHANLFATDPKYRKDALQTCPEDRPLIIQFCGNDAQQILDA
ALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVSTLHAKLA
VPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANW
NYIKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAI
FKGVSPPVWQMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELR
QYLATANQLVQFQAVVQQVRAKYEPFHKGEVPYEPEQMAAGSEEDLPLSP
WLCQPYIRASPESHRQKIAEKVREAEDPNRTKRQYFDKDGKEISRKRMKK
LRRRQRRPNKTEAQIQHRHERRLEYCSECANPQGSKCEFQLCRVCCKDRC
YNNDRDCPGHGIFIKSRRARAKLFEEHIAPQDHQKVTRTSDDDLTIAPTD
AQEPL*
BS08813.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3645-PC | 505 | CG3645-PC | 1..505 | 1..505 | 2721 | 100 | Plus |
CG3645-PB | 505 | CG3645-PB | 1..505 | 1..505 | 2721 | 100 | Plus |
CG3645-PA | 505 | CG3645-PA | 1..505 | 1..505 | 2721 | 100 | Plus |
CG10495-PA | 396 | CG10495-PA | 26..370 | 31..386 | 359 | 29.2 | Plus |
CG1434-PB | 473 | CG1434-PB | 25..282 | 29..268 | 266 | 30 | Plus |