Clone BS08813 Report

Search the DGRC for BS08813

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG3645-RA
Protein status:BS08813.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08813.3prime Sequence

929 bp (844 high quality bases) assembled on 2006-01-18

> BS08813.3prime
ATGGTCTAGAAAGCTTTCAAAGCGGCTCCTGCGCATCCGTTGGGGCTATC
GTCAGGTCATCGTCTGAAGTTCTCGTCACCTTCTGGTGGTCCTGCGGGGC
GATGTGCTCCTCAAAAAGCTTGGCCCTGGCTCGGCGGGATTTGATGAAGA
TCCCGTGACCAGGACAATCGCGATCGTTGTTGTAGCACCTGTCCTTGCAG
CACACGCGGCACAGCTGGAACTCGCACTTGGATCCCTGGGGATTGGCGCA
TTCCGAGCAGTATTCCAGGCGCCTCTCGTGCCGATGCTGGATCTGGGCCT
CCGTTTTGTTGGGTCTTCGCTGGCGTCTTCGAAGTTTCTTCATCCGTTTG
CGGGAGATCTCCTTGCCGTCCTTGTCGAAGTACTGCCGCTTGGTTCGGTT
GGGATCCTCAGCCTCGCGCACCTTTTCGGCAATCTTCTGGCGATGGGATT
CGGGTGAGGCGCGTATATATGGTTGACACAGCCAGGGAGAAAGTGGCAGA
TCTTCCTCTGATCCAGCAGCCATTTGTTCGGGCTCGTATGGCACCTCGCC
CTTGTGGAACGGCTCGTATTTTGCCCGTACTTGTTGCACGACGGCTTGGA
ATTGCACGAGCTGATTTGCAGTGGCTAGGTATTGCCGTAACTCAGAGTTC
TGCCGGATATTCATGATGTGATGGAAGAGCTTGAAGAGATGTCCTCGTAT
AAAGGAACTCGGGCACGGATGGAGCTGAACGAGCTCCAAGTACTCATGGG
CCATTTGCCAGACGGGCGGTGAGACTCCTTTAAAGATGGCCGGATTGTGC
AGATTACCCTCGGCGCTCATTACACCATCGACTCCTGTTTCAGTCAGACA
ACGATGAACGTCGTCCAGGGCCAGGATGTTTCCGTTGGCAAGCATTGGAA
TCTTGATGTGCTGGCGCACATTCTTAATG

BS08813.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3645-PA 1518 CG3645-RA 606..1518 929..17 4565 100 Minus
CG3645-PB 1518 CG3645-RB 606..1518 929..17 4565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3645-RC 1799 CG3645-RC 813..1725 929..17 4565 100 Minus
CG3645-RB 1753 CG3645-RB 767..1679 929..17 4565 100 Minus
CG3645-RA 1726 CG3645-RA 740..1652 929..17 4565 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 252663..253145 17..499 2415 100 Plus
2L 23513712 2L 253446..253709 666..929 1320 100 Plus
2L 23513712 2L 253220..253385 500..665 830 100 Plus
Blast to na_te.dros performed on 2015-02-01 06:47:30 has no hits.

BS08813.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:48 Download gff for BS08813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3645-PB 606..1518 17..929 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:00 Download gff for BS08813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3645-PB 606..1518 17..929 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:27 Download gff for BS08813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3645-RA 740..1656 11..929 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:38:03 Download gff for BS08813.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3645-RA 740..1656 11..929 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:03 Download gff for BS08813.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 252659..253145 11..499 99 <- Plus
2L 253220..253385 500..665 100 <- Plus
2L 253446..253709 666..929 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:27 Download gff for BS08813.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 252659..253145 11..499 99 <- Plus
arm_2L 253220..253385 500..665 100 <- Plus
arm_2L 253446..253709 666..929 100   Plus

BS08813.5prime Sequence

945 bp (792 high quality bases) assembled on 2006-01-18

> BS08813.5prime
GAAGTTATCAGTCGACATGGTGAACGATGAAGACGCCGCGCACCAAAGAC
CTAGCAAGCCCACCGGATACAACTTCTACCGCTCCTCCTTGGGATCCCCG
CGTTATGTAGTGGCTCCCATGGTGGATCAAAGCGAGCTGGCCTGGCGAAT
GCTGTGCCGACGCTATGGCGCCGAACTCTGCTACTCGCCAATGTACCATG
CGAACCTCTTCGCCACAGACCCCAAGTATCGCAAGGATGCCTTGCAGACG
TGTCCCGAGGACAGGCCATTGATCATCCAGTTCTGTGGCAACGATGCTCA
ACAAATCCTGGATGCAGCACTCCTGGCGCAGGACCACTGCGACGCGGTGG
ACATAAATTTGGGTTGTCCCCAGGCCATTGCCAAGAGAGGTCACTACGGA
TCCTTCCTGCAGGATGAGTGGGAGCTGCTGACAGAGATTGTGAGCACACT
GCACGCAAAACTAGCCGTTCCTGTAACTTGCAAGATTCGCATCTTCGAGG
ACCTTGAGAAGACCATTAGGTATGCCAAGATGCTGGAGGCGGCCGGCTGC
CAGCTTCTGACTGTCCACGGTAGGACCAGAGAGCAGAAGGGTCCGCTGAC
CGGGGTGGCTAATTGGAACTACATTAAGAATGTGCGCCAGCACATCAAGA
TTCCAATGCTTGCCAACGGAAACATCCTGGCCCTGGACGACGTTCATCGT
TGTCTGACTGAAACAGGAGTCGATGGTGTAATGAGCGCCGAGGGTAATCT
GCACAATCCGGCCATCTTTAAAGGAGTCTCACCGCCCGTCTGGCAAATGG
CCCATGAGTACTTGGAGCTCGTTCAGCTCCATCCGTGCCCGAGTTCCTTT
ATACGAGGACATCTCTTCAAGCTCTTCCATCACATCATGAATATCCGGCA
GAACTCTGAGTTACGGCAATACCTAGCCACTGCAAATCAGCTCGT

BS08813.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3645-PA 1518 CG3645-RA 1..929 17..945 4645 100 Plus
CG3645-PB 1518 CG3645-RB 1..929 17..945 4645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG3645-RC 1799 CG3645-RC 207..1136 16..945 4650 100 Plus
CG3645-RB 1753 CG3645-RB 161..1090 16..945 4650 100 Plus
CG3645-RA 1726 CG3645-RA 134..1063 16..945 4650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 253446..253891 885..440 2230 100 Minus
2L 23513712 2L 253956..254380 440..16 2125 100 Minus
2L 23513712 2L 253326..253385 945..886 300 100 Minus
Blast to na_te.dros performed 2015-02-02 09:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 2782..2824 90..47 118 77.3 Minus

BS08813.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:49 Download gff for BS08813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3645-PB 1..929 17..945 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:01 Download gff for BS08813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3645-PB 1..929 17..945 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:22:53 Download gff for BS08813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3645-RA 134..1063 16..945 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:58 Download gff for BS08813.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3645-RA 134..1063 16..945 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:58 Download gff for BS08813.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 253326..253385 886..945 100 <- Minus
2L 253446..253890 441..885 100 <- Minus
2L 253956..254380 16..440 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:22:53 Download gff for BS08813.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 253326..253385 886..945 100 <- Minus
arm_2L 253446..253890 441..885 100 <- Minus
arm_2L 253956..254380 16..440 100   Minus

BS08813.complete Sequence

1550 bp (1550 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636273

> BS08813.complete
GAAGTTATCAGTCGACATGGTGAACGATGAAGACGCCGCGCACCAAAGAC
CTAGCAAGCCCACCGGATACAACTTCTACCGCTCCTCCTTGGGATCCCCG
CGTTATGTAGTGGCTCCCATGGTGGATCAAAGCGAGCTGGCCTGGCGAAT
GCTGTGCCGACGCTATGGCGCCGAACTCTGCTACTCGCCAATGTACCATG
CGAACCTCTTCGCCACAGACCCCAAGTATCGCAAGGATGCCTTGCAGACG
TGTCCCGAGGACAGGCCATTGATCATCCAGTTCTGTGGCAACGATGCTCA
ACAAATCCTGGATGCAGCACTCCTGGCGCAGGACCACTGCGACGCGGTGG
ACATAAATTTGGGTTGTCCCCAGGCCATTGCCAAGAGAGGTCACTACGGA
TCCTTCCTGCAGGATGAGTGGGAGCTGCTGACAGAGATTGTGAGCACACT
GCACGCAAAACTAGCCGTTCCTGTAACTTGCAAGATTCGCATCTTCGAGG
ACCTTGAGAAGACCATTAGGTATGCCAAGATGCTGGAGGCGGCCGGCTGC
CAGCTTCTGACTGTCCACGGTAGGACCAGAGAGCAGAAGGGTCCGCTGAC
CGGGGTGGCTAATTGGAACTACATTAAGAATGTGCGCCAGCACATCAAGA
TTCCAATGCTTGCCAACGGAAACATCCTGGCCCTGGACGACGTTCATCGT
TGTCTGACTGAAACAGGAGTCGATGGTGTAATGAGCGCCGAGGGTAATCT
GCACAATCCGGCCATCTTTAAAGGAGTCTCACCGCCCGTCTGGCAAATGG
CCCATGAGTACTTGGAGCTCGTTCAGCTCCATCCGTGCCCGAGTTCCTTT
ATACGAGGACATCTCTTCAAGCTCTTCCATCACATCATGAATATCCGGCA
GAACTCTGAGTTACGGCAATACCTAGCCACTGCAAATCAGCTCGTGCAAT
TCCAAGCCGTCGTGCAACAAGTACGGGCAAAATACGAGCCGTTCCACAAG
GGCGAGGTGCCATACGAGCCCGAACAAATGGCTGCTGGATCAGAGGAAGA
TCTGCCACTTTCTCCCTGGCTGTGTCAACCATATATACGCGCCTCACCCG
AATCCCATCGCCAGAAGATTGCCGAAAAGGTGCGCGAGGCTGAGGATCCC
AACCGAACCAAGCGGCAGTACTTCGACAAGGACGGCAAGGAGATCTCCCG
CAAACGGATGAAGAAACTTCGAAGACGCCAGCGAAGACCCAACAAAACGG
AGGCCCAGATCCAGCATCGGCACGAGAGGCGCCTGGAATACTGCTCGGAA
TGCGCCAATCCCCAGGGATCCAAGTGCGAGTTCCAGCTGTGCCGCGTGTG
CTGCAAGGACAGGTGCTACAACAACGATCGCGATTGTCCTGGTCACGGGA
TCTTCATCAAATCCCGCCGAGCCAGGGCCAAGCTTTTTGAGGAGCACATC
GCCCCGCAGGACCACCAGAAGGTGACGAGAACTTCAGACGATGACCTGAC
GATAGCCCCAACGGATGCGCAGGAGCCGCTTTGAAAGCTTTCTAGACCAT

BS08813.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3645-RC 1518 CG3645-PC 1..1518 17..1534 7590 100 Plus
CG3645-RB 1518 CG3645-PB 1..1518 17..1534 7590 100 Plus
CG3645-RA 1518 CG3645-PA 1..1518 17..1534 7590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3645-RC 1799 CG3645-RC 207..1725 16..1534 7595 100 Plus
CG3645-RB 1753 CG3645-RB 161..1679 16..1534 7595 100 Plus
CG3645-RA 1726 CG3645-RA 134..1652 16..1534 7595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 252663..253145 1534..1052 2415 100 Minus
2L 23513712 2L 253446..253891 885..440 2230 100 Minus
2L 23513712 2L 253956..254380 440..16 2125 100 Minus
2L 23513712 2L 253220..253385 1051..886 830 100 Minus
Blast to na_te.dros performed 2014-11-27 19:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 2782..2824 90..47 118 77.3 Minus

BS08813.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:06 Download gff for BS08813.complete
Subject Subject Range Query Range Percent Splice Strand
CG3645-RB 1..1518 17..1534 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:18 Download gff for BS08813.complete
Subject Subject Range Query Range Percent Splice Strand
CG3645-RB 149..1671 16..1540 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:20 Download gff for BS08813.complete
Subject Subject Range Query Range Percent Splice Strand
CG3645-RA 135..1651 17..1533 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:07 Download gff for BS08813.complete
Subject Subject Range Query Range Percent Splice Strand
CG3645-RB 149..1671 16..1540 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:46 Download gff for BS08813.complete
Subject Subject Range Query Range Percent Splice Strand
CG3645-RA 135..1651 17..1533 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:46 Download gff for BS08813.complete
Subject Subject Range Query Range Percent Splice Strand
2L 252664..253145 1052..1533 100 <- Minus
2L 253220..253385 886..1051 100 <- Minus
2L 253446..253890 441..885 100 <- Minus
2L 253956..254379 17..440 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:20 Download gff for BS08813.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 252664..253145 1052..1533 100 <- Minus
arm_2L 253220..253385 886..1051 100 <- Minus
arm_2L 253446..253890 441..885 100 <- Minus
arm_2L 253956..254379 17..440 100   Minus

BS08813.pep Sequence

Translation from 16 to 1533

> BS08813.pep
MVNDEDAAHQRPSKPTGYNFYRSSLGSPRYVVAPMVDQSELAWRMLCRRY
GAELCYSPMYHANLFATDPKYRKDALQTCPEDRPLIIQFCGNDAQQILDA
ALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVSTLHAKLA
VPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANW
NYIKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAI
FKGVSPPVWQMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELR
QYLATANQLVQFQAVVQQVRAKYEPFHKGEVPYEPEQMAAGSEEDLPLSP
WLCQPYIRASPESHRQKIAEKVREAEDPNRTKRQYFDKDGKEISRKRMKK
LRRRQRRPNKTEAQIQHRHERRLEYCSECANPQGSKCEFQLCRVCCKDRC
YNNDRDCPGHGIFIKSRRARAKLFEEHIAPQDHQKVTRTSDDDLTIAPTD
AQEPL*

BS08813.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3645-PC 505 CG3645-PC 1..505 1..505 2721 100 Plus
CG3645-PB 505 CG3645-PB 1..505 1..505 2721 100 Plus
CG3645-PA 505 CG3645-PA 1..505 1..505 2721 100 Plus
CG10495-PA 396 CG10495-PA 26..370 31..386 359 29.2 Plus
CG1434-PB 473 CG1434-PB 25..282 29..268 266 30 Plus