Clone Sequence Records
BS08814.3prime Sequence
947 bp (842 high quality bases) assembled on 2006-01-18
> BS08814.3prime
ATGGTCTAGAAAGCTTTCAGTAGTTTTCCACATCCACATCGGGCGTGGGT
TCGCGCAGCTTGCGGCGGGAGCGGATCACATTGCTGGAGCTGCTGGAGCT
CCTGGCGCCCTCAATATCGTTGTGTTTCTGGCCGCGTTTGCCTGCAGCCT
TGGCAGTGCTAGCAGCCCGACGTGGTTGTGCCTTCCGGACGGGCATGTCC
CGGAGACGGGCTGCTCCGGCATCGCCCAGGGGATCATCATCGAACTCCGC
CTCCTCGCTAACCTCTCGAATAACCAGTCGCTTGGTCTCGGTCCTCGGCT
CGTAGATCGTCTCTGTGTAGCTCTCGATGCTGCTCAAGGAACTGGCTCGC
GGCAGCCAGTTTTCCGTGCTGTCCATCGTATCCTGGCCCCTGTACAGCTC
ATCGGCCGAATGGGAGTTTTGCAGGCCGCGTCCATGGCCAGATGGCGCCG
TAGTCAGCGCGTAGGTCTTGATGGCCGTCTGCATGAGGACATTGGTGGCA
TAGTTTACTCCCTTGGAGCCCAGCTGCAGGACCGCCGAATAGCCGCGCTC
TTTGGCCTGATTCACGTACTCGTCGATCTCCTGTTCGTGGCGCGTCAACA
TAGGATGCACGAATTTGCGATACAAAGTCGAACTGCCCTTTGTGGCCGGC
GAGAGGAGCCAGAACACCAGGGCCACCTTCACCTCGTAGTAGAACGGTAG
CCAGGAGATAAATATGTCCGTGAATGTTTCTATGCAGGTGAAAAATGCAA
AGACAATCCAGTACATCATCCATTTAACATATTCCTTGACATCCTTGGTC
CTGACGGCCTTGTATGAGGCATATGCCGGGTACAGGGTGCCGCAGAACAA
TCTGAAAGCGGGAAACAGTAAACTCTGGGCACAAGTGCGAGGCGCAAGGA
ATATGACNATCAGTGAGCAGATGCAGGCCGTGTTGAAGGAGAGGCAT
BS08814.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30193-PD | 1308 | CG30193-RD | 378..1308 | 947..17 | 4636 | 99.8 | Minus |
CG30193-PF | 867 | CG30193-RF | 33..867 | 851..17 | 4175 | 100 | Minus |
CG30193-PA | 867 | CG30193-RA | 33..867 | 851..17 | 4175 | 100 | Minus |
CG30193-PB | 867 | CG30193-RB | 33..867 | 851..17 | 4175 | 100 | Minus |
CG30193-PC | 867 | CG30193-RC | 33..867 | 851..17 | 4175 | 100 | Minus |
CG30193-PE | 867 | CG30193-RE | 33..867 | 851..17 | 4175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:46:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42678-RD | 1573 | CG42678-RD | 451..1382 | 947..16 | 4649 | 99.9 | Minus |
CG42678-RG | 2534 | CG42678-RG | 507..1342 | 851..16 | 4180 | 100 | Minus |
CG42678-RE | 1469 | CG42678-RE | 443..1278 | 851..16 | 4180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22929086..22929538 | 468..16 | 2265 | 100 | Minus |
2R | 25286936 | 2R | 22927250..22927448 | 778..580 | 995 | 100 | Minus |
2R | 25286936 | 2R | 22927003..22927173 | 947..777 | 844 | 99.4 | Minus |
2R | 25286936 | 2R | 22927513..22927629 | 583..467 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:46:28 has no hits.
BS08814.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:50 Download gff for
BS08814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-PD | 378..1308 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:03 Download gff for
BS08814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-PD | 378..1308 | 17..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:09:21 Download gff for
BS08814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RD | 451..1390 | 7..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:31:32 Download gff for
BS08814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RD | 451..1390 | 7..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:32 Download gff for
BS08814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22927003..22927171 | 779..947 | 99 | -> | Minus |
2R | 22927250..22927447 | 581..778 | 100 | -> | Minus |
2R | 22927516..22927629 | 467..580 | 100 | -> | Minus |
2R | 22929088..22929546 | 7..466 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:09:21 Download gff for
BS08814.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18815039..18815152 | 467..580 | 100 | -> | Minus |
arm_2R | 18814526..18814694 | 779..947 | 99 | -> | Minus |
arm_2R | 18814773..18814970 | 581..778 | 100 | -> | Minus |
arm_2R | 18816611..18817069 | 7..466 | 99 | | Minus |
BS08814.5prime Sequence
892 bp (781 high quality bases) assembled on 2006-01-18
> BS08814.5prime
GAAGTTATCAGTCGACATGAGGCCAATCTATCAGCAGGAGCCGCCGCTCT
TCTACCAGCGGCCAGCTAATCTCCGCCGCCTACGTCATCCGCCGGGCACC
GTCTACGGACGCAGTTACTCGCTCGAGGACCAGCCAGAGGACGTGATACC
CGTGTATCCAAAGTTTATCTACGCCCCACAACAGCAGCAACAGCAACAAC
GGGCCCCATATCCGCTGTATCAACTGGGCGACTCGCTGAGCTCGCTGGAC
AGCGATTTTCCCGAGAATGAGTACGCGGGTGCCTACATAGTGGAGGATCG
AGTTCCGCTGGCCAACGCACCTACTCCCAAAGTTGTCCAGAACCTCAATG
CGTTGGGTCGAATGCTGGAGCTGCTGCAGCGCTGTCCTCTGCCATGCCTC
TCCTTCAACACGGCCTGCATCTGCTCACTGATTGTCATATTCCTTGCGCC
TCGCACTTGTGCCCAGAGTTTACTGTTTCCCGCTTTCAGATTGTTCTGCG
GCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGGACCAAGGAT
GTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTTTGCATTTTT
CACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGCTACCGTTCT
ACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCGCCGGCCACA
AAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTATGTTGACGCG
CCACGAACAGGAGATCGACGAGTACGTGAATCAGGCCAAAGAGCGCGGCT
ATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTATGCCACCAAT
GTCCTCATGCAGACGGCCATCAAGACCTACGCGCTGACTACG
BS08814.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30193-PD | 1308 | CG30193-RD | 1..876 | 17..892 | 4380 | 100 | Plus |
CG30193-PF | 867 | CG30193-RF | 33..435 | 490..892 | 2015 | 100 | Plus |
CG30193-PA | 867 | CG30193-RA | 33..435 | 490..892 | 2015 | 100 | Plus |
CG30193-PB | 867 | CG30193-RB | 33..435 | 490..892 | 2015 | 100 | Plus |
CG30193-PC | 867 | CG30193-RC | 33..435 | 490..892 | 2015 | 100 | Plus |
CG30193-PE | 867 | CG30193-RE | 33..435 | 490..892 | 2015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42678-RD | 1573 | CG42678-RD | 73..949 | 16..892 | 4385 | 100 | Plus |
CG42678-RO | 1321 | CG42678-RO | 73..931 | 16..874 | 4295 | 100 | Plus |
CG42678-RR | 1863 | CG42678-RR | 73..931 | 16..874 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22926625..22927173 | 16..564 | 2745 | 100 | Plus |
2R | 25286936 | 2R | 22927250..22927448 | 563..761 | 995 | 100 | Plus |
2R | 25286936 | 2R | 22927513..22927629 | 758..874 | 585 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 10:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2369 | 175..226 | 125 | 71.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6823 | 176..226 | 120 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..6889 | 176..226 | 120 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6875..6927 | 179..231 | 112 | 67.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6757 | 176..202 | 108 | 88.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6778 | 176..202 | 108 | 88.9 | Plus |
BS08814.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:52 Download gff for
BS08814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-PD | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:05 Download gff for
BS08814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-PD | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:46 Download gff for
BS08814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RD | 68..949 | 11..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:42 Download gff for
BS08814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RD | 68..949 | 11..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:42 Download gff for
BS08814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22926620..22927171 | 11..562 | 99 | -> | Plus |
2R | 22927250..22927447 | 563..760 | 100 | -> | Plus |
2R | 22927516..22927629 | 761..874 | 100 | -> | Plus |
2R | 22929088..22929105 | 875..892 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:46 Download gff for
BS08814.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18815039..18815152 | 761..874 | 100 | -> | Plus |
arm_2R | 18816611..18816628 | 875..892 | 100 | | Plus |
arm_2R | 18814143..18814694 | 11..562 | 99 | -> | Plus |
arm_2R | 18814773..18814970 | 563..760 | 100 | -> | Plus |
BS08814.complete Sequence
1340 bp (1340 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636274
> BS08814.complete
GAAGTTATCAGTCGACATGAGGCCAATCTATCAGCAGGAGCCGCCGCTCT
TCTACCAGCGGCCAGCTAATCTCCGCCGCCTACGTCATCCGCCGGGCACC
GTCTACGGACGCAGTTACTCGCTCGAGGACCAGCCAGAGGACGTGATACC
CGTGTATCCAAAGTTTATCTACGCCCCACAACAGCAGCAACAGCAACAAC
GGGCCCCATATCCGCTGTATCAACTGGGCGACTCGCTGAGCTCGCTGGAC
AGCGATTTTCCCGAGAATGAGTACGCGGGTGCCTACATAGTGGAGGATCG
AGTTCCGCTGGCCAACGCACCTACTCCCAAAGTTGTCCAGAACCTCAATG
CGTTGGGTCGAATGCTGGAGCTGCTGCAGCGCTGTCCTCTGCCATGCCTC
TCCTTCAACACGGCCTGCATCTGCTCACTGATTGTCATATTCCTTGCGCC
TCGCACTTGTGCCCAGAGTTTACTGTTTCCCGCTTTCAGATTGTTCTGCG
GCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGGACCAAGGAT
GTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTTTGCATTTTT
CACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGCTACCGTTCT
ACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCGCCGGCCACA
AAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTATGTTGACGCG
CCACGAACAGGAGATCGACGAGTACGTGAATCAGGCCAAAGAGCGCGGCT
ATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTATGCCACCAAT
GTCCTCATGCAGACGGCCATCAAGACCTACGCGCTGACTACGGCGCCATC
TGGCCATGGACGCGGCCTGCAAAACTCCCATTCGGCCGATGAGCTGTACA
GGGGCCAGGATACGATGGACAGCACGGAAAACTGGCTGCCGCGAGCCAGT
TCCTTGAGCAGCATCGAGAGCTACACAGAGACGATCTACGAGCCGAGGAC
CGAGACCAAGCGACTGGTTATTCGAGAGGTTAGCGAGGAGGCGGAGTTCG
ATGATGATCCCCTGGGCGATGCCGGAGCAGCCCGTCTCCGGGACATGCCC
GTCCGGAAGGCACAACCACGTCGGGCTGCTAGCACTGCCAAGGCTGCAGG
CAAACGCGGCCAGAAACACAACGATATTGAGGGCGCCAGGAGCTCCAGCA
GCTCCAGCAATGTGATCCGCTCCCGCCGCAAGCTGCGCGAACCCACGCCC
GATGTGGATGTGGAAAACTACTGAAAGCTTTCTAGACCAT
BS08814.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42678-RD | 1308 | CG42678-PD | 1..1308 | 17..1324 | 6540 | 100 | Plus |
CG42678-RO | 876 | CG42678-PO | 1..858 | 17..874 | 4290 | 100 | Plus |
CG42678-RR | 1380 | CG42678-PR | 1..858 | 17..874 | 4290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42678-RD | 1573 | CG42678-RD | 73..1382 | 16..1325 | 6550 | 100 | Plus |
CG42678-RO | 1321 | CG42678-RO | 73..931 | 16..874 | 4295 | 100 | Plus |
CG42678-RR | 1863 | CG42678-RR | 73..931 | 16..874 | 4295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:52:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22926625..22927173 | 16..564 | 2745 | 100 | Plus |
2R | 25286936 | 2R | 22929086..22929538 | 873..1325 | 2265 | 100 | Plus |
2R | 25286936 | 2R | 22927250..22927448 | 563..761 | 995 | 100 | Plus |
2R | 25286936 | 2R | 22927513..22927629 | 758..874 | 585 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 21:52:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2369 | 175..226 | 125 | 71.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6823 | 176..226 | 120 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..6889 | 176..226 | 120 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6875..6927 | 179..231 | 112 | 67.9 | Plus |
BS08814.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:08 Download gff for
BS08814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-RD | 1..1308 | 17..1324 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:20 Download gff for
BS08814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-RD | 845..2167 | 11..1334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:30 Download gff for
BS08814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RD | 74..1380 | 17..1323 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:08 Download gff for
BS08814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-RD | 845..2167 | 11..1334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:45 Download gff for
BS08814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RD | 74..1380 | 17..1323 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:45 Download gff for
BS08814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22926626..22927171 | 17..562 | 100 | -> | Plus |
2R | 22927250..22927447 | 563..760 | 100 | -> | Plus |
2R | 22927516..22927629 | 761..874 | 100 | -> | Plus |
2R | 22929088..22929536 | 875..1323 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:30 Download gff for
BS08814.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18814149..18814694 | 17..562 | 100 | -> | Plus |
arm_2R | 18814773..18814970 | 563..760 | 100 | -> | Plus |
arm_2R | 18815039..18815152 | 761..874 | 100 | -> | Plus |
arm_2R | 18816611..18817059 | 875..1323 | 100 | | Plus |
BS08814.pep Sequence
Translation from 16 to 1323
> BS08814.pep
MRPIYQQEPPLFYQRPANLRRLRHPPGTVYGRSYSLEDQPEDVIPVYPKF
IYAPQQQQQQQRAPYPLYQLGDSLSSLDSDFPENEYAGAYIVEDRVPLAN
APTPKVVQNLNALGRMLELLQRCPLPCLSFNTACICSLIVIFLAPRTCAQ
SLLFPAFRLFCGTLYPAYASYKAVRTKDVKEYVKWMMYWIVFAFFTCIET
FTDIFISWLPFYYEVKVALVFWLLSPATKGSSTLYRKFVHPMLTRHEQEI
DEYVNQAKERGYSAVLQLGSKGVNYATNVLMQTAIKTYALTTAPSGHGRG
LQNSHSADELYRGQDTMDSTENWLPRASSLSSIESYTETIYEPRTETKRL
VIREVSEEAEFDDDPLGDAGAARLRDMPVRKAQPRRAASTAKAAGKRGQK
HNDIEGARSSSSSSNVIRSRRKLREPTPDVDVENY*
BS08814.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42678-PD | 435 | CG30193-PD | 1..435 | 1..435 | 2282 | 100 | Plus |
CG42678-PR | 459 | CG42678-PR | 1..317 | 1..318 | 1526 | 91.8 | Plus |
CG42678-PQ | 685 | CG42678-PQ | 1..317 | 1..318 | 1526 | 91.8 | Plus |
CG42678-PI | 716 | CG42678-PI | 1..317 | 1..318 | 1526 | 91.8 | Plus |
CG42678-PO | 291 | CG42678-PO | 1..286 | 1..286 | 1523 | 100 | Plus |