Clone BS08814 Report

Search the DGRC for BS08814

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG42678-RD
Protein status:BS08814.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08814.3prime Sequence

947 bp (842 high quality bases) assembled on 2006-01-18

> BS08814.3prime
ATGGTCTAGAAAGCTTTCAGTAGTTTTCCACATCCACATCGGGCGTGGGT
TCGCGCAGCTTGCGGCGGGAGCGGATCACATTGCTGGAGCTGCTGGAGCT
CCTGGCGCCCTCAATATCGTTGTGTTTCTGGCCGCGTTTGCCTGCAGCCT
TGGCAGTGCTAGCAGCCCGACGTGGTTGTGCCTTCCGGACGGGCATGTCC
CGGAGACGGGCTGCTCCGGCATCGCCCAGGGGATCATCATCGAACTCCGC
CTCCTCGCTAACCTCTCGAATAACCAGTCGCTTGGTCTCGGTCCTCGGCT
CGTAGATCGTCTCTGTGTAGCTCTCGATGCTGCTCAAGGAACTGGCTCGC
GGCAGCCAGTTTTCCGTGCTGTCCATCGTATCCTGGCCCCTGTACAGCTC
ATCGGCCGAATGGGAGTTTTGCAGGCCGCGTCCATGGCCAGATGGCGCCG
TAGTCAGCGCGTAGGTCTTGATGGCCGTCTGCATGAGGACATTGGTGGCA
TAGTTTACTCCCTTGGAGCCCAGCTGCAGGACCGCCGAATAGCCGCGCTC
TTTGGCCTGATTCACGTACTCGTCGATCTCCTGTTCGTGGCGCGTCAACA
TAGGATGCACGAATTTGCGATACAAAGTCGAACTGCCCTTTGTGGCCGGC
GAGAGGAGCCAGAACACCAGGGCCACCTTCACCTCGTAGTAGAACGGTAG
CCAGGAGATAAATATGTCCGTGAATGTTTCTATGCAGGTGAAAAATGCAA
AGACAATCCAGTACATCATCCATTTAACATATTCCTTGACATCCTTGGTC
CTGACGGCCTTGTATGAGGCATATGCCGGGTACAGGGTGCCGCAGAACAA
TCTGAAAGCGGGAAACAGTAAACTCTGGGCACAAGTGCGAGGCGCAAGGA
ATATGACNATCAGTGAGCAGATGCAGGCCGTGTTGAAGGAGAGGCAT

BS08814.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG30193-PD 1308 CG30193-RD 378..1308 947..17 4636 99.8 Minus
CG30193-PF 867 CG30193-RF 33..867 851..17 4175 100 Minus
CG30193-PA 867 CG30193-RA 33..867 851..17 4175 100 Minus
CG30193-PB 867 CG30193-RB 33..867 851..17 4175 100 Minus
CG30193-PC 867 CG30193-RC 33..867 851..17 4175 100 Minus
CG30193-PE 867 CG30193-RE 33..867 851..17 4175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-RD 1573 CG42678-RD 451..1382 947..16 4649 99.9 Minus
CG42678-RG 2534 CG42678-RG 507..1342 851..16 4180 100 Minus
CG42678-RE 1469 CG42678-RE 443..1278 851..16 4180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22929086..22929538 468..16 2265 100 Minus
2R 25286936 2R 22927250..22927448 778..580 995 100 Minus
2R 25286936 2R 22927003..22927173 947..777 844 99.4 Minus
2R 25286936 2R 22927513..22927629 583..467 585 100 Minus
Blast to na_te.dros performed on 2015-01-31 14:46:28 has no hits.

BS08814.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:50 Download gff for BS08814.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30193-PD 378..1308 17..947 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:03 Download gff for BS08814.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30193-PD 378..1308 17..947 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:09:21 Download gff for BS08814.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42678-RD 451..1390 7..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:31:32 Download gff for BS08814.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42678-RD 451..1390 7..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:31:32 Download gff for BS08814.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22927003..22927171 779..947 99 -> Minus
2R 22927250..22927447 581..778 100 -> Minus
2R 22927516..22927629 467..580 100 -> Minus
2R 22929088..22929546 7..466 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:09:21 Download gff for BS08814.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18815039..18815152 467..580 100 -> Minus
arm_2R 18814526..18814694 779..947 99 -> Minus
arm_2R 18814773..18814970 581..778 100 -> Minus
arm_2R 18816611..18817069 7..466 99   Minus

BS08814.5prime Sequence

892 bp (781 high quality bases) assembled on 2006-01-18

> BS08814.5prime
GAAGTTATCAGTCGACATGAGGCCAATCTATCAGCAGGAGCCGCCGCTCT
TCTACCAGCGGCCAGCTAATCTCCGCCGCCTACGTCATCCGCCGGGCACC
GTCTACGGACGCAGTTACTCGCTCGAGGACCAGCCAGAGGACGTGATACC
CGTGTATCCAAAGTTTATCTACGCCCCACAACAGCAGCAACAGCAACAAC
GGGCCCCATATCCGCTGTATCAACTGGGCGACTCGCTGAGCTCGCTGGAC
AGCGATTTTCCCGAGAATGAGTACGCGGGTGCCTACATAGTGGAGGATCG
AGTTCCGCTGGCCAACGCACCTACTCCCAAAGTTGTCCAGAACCTCAATG
CGTTGGGTCGAATGCTGGAGCTGCTGCAGCGCTGTCCTCTGCCATGCCTC
TCCTTCAACACGGCCTGCATCTGCTCACTGATTGTCATATTCCTTGCGCC
TCGCACTTGTGCCCAGAGTTTACTGTTTCCCGCTTTCAGATTGTTCTGCG
GCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGGACCAAGGAT
GTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTTTGCATTTTT
CACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGCTACCGTTCT
ACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCGCCGGCCACA
AAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTATGTTGACGCG
CCACGAACAGGAGATCGACGAGTACGTGAATCAGGCCAAAGAGCGCGGCT
ATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTATGCCACCAAT
GTCCTCATGCAGACGGCCATCAAGACCTACGCGCTGACTACG

BS08814.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG30193-PD 1308 CG30193-RD 1..876 17..892 4380 100 Plus
CG30193-PF 867 CG30193-RF 33..435 490..892 2015 100 Plus
CG30193-PA 867 CG30193-RA 33..435 490..892 2015 100 Plus
CG30193-PB 867 CG30193-RB 33..435 490..892 2015 100 Plus
CG30193-PC 867 CG30193-RC 33..435 490..892 2015 100 Plus
CG30193-PE 867 CG30193-RE 33..435 490..892 2015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-RD 1573 CG42678-RD 73..949 16..892 4385 100 Plus
CG42678-RO 1321 CG42678-RO 73..931 16..874 4295 100 Plus
CG42678-RR 1863 CG42678-RR 73..931 16..874 4295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22926625..22927173 16..564 2745 100 Plus
2R 25286936 2R 22927250..22927448 563..761 995 100 Plus
2R 25286936 2R 22927513..22927629 758..874 585 100 Plus
Blast to na_te.dros performed 2015-02-11 10:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2369 175..226 125 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6823 176..226 120 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6839..6889 176..226 120 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6875..6927 179..231 112 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6757 176..202 108 88.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6752..6778 176..202 108 88.9 Plus

BS08814.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:52 Download gff for BS08814.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30193-PD 1..876 17..892 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:05 Download gff for BS08814.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30193-PD 1..876 17..892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:46 Download gff for BS08814.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42678-RD 68..949 11..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:42 Download gff for BS08814.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42678-RD 68..949 11..892 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:42 Download gff for BS08814.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22926620..22927171 11..562 99 -> Plus
2R 22927250..22927447 563..760 100 -> Plus
2R 22927516..22927629 761..874 100 -> Plus
2R 22929088..22929105 875..892 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:46 Download gff for BS08814.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18815039..18815152 761..874 100 -> Plus
arm_2R 18816611..18816628 875..892 100   Plus
arm_2R 18814143..18814694 11..562 99 -> Plus
arm_2R 18814773..18814970 563..760 100 -> Plus

BS08814.complete Sequence

1340 bp (1340 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636274

> BS08814.complete
GAAGTTATCAGTCGACATGAGGCCAATCTATCAGCAGGAGCCGCCGCTCT
TCTACCAGCGGCCAGCTAATCTCCGCCGCCTACGTCATCCGCCGGGCACC
GTCTACGGACGCAGTTACTCGCTCGAGGACCAGCCAGAGGACGTGATACC
CGTGTATCCAAAGTTTATCTACGCCCCACAACAGCAGCAACAGCAACAAC
GGGCCCCATATCCGCTGTATCAACTGGGCGACTCGCTGAGCTCGCTGGAC
AGCGATTTTCCCGAGAATGAGTACGCGGGTGCCTACATAGTGGAGGATCG
AGTTCCGCTGGCCAACGCACCTACTCCCAAAGTTGTCCAGAACCTCAATG
CGTTGGGTCGAATGCTGGAGCTGCTGCAGCGCTGTCCTCTGCCATGCCTC
TCCTTCAACACGGCCTGCATCTGCTCACTGATTGTCATATTCCTTGCGCC
TCGCACTTGTGCCCAGAGTTTACTGTTTCCCGCTTTCAGATTGTTCTGCG
GCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGGACCAAGGAT
GTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTTTGCATTTTT
CACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGCTACCGTTCT
ACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCGCCGGCCACA
AAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTATGTTGACGCG
CCACGAACAGGAGATCGACGAGTACGTGAATCAGGCCAAAGAGCGCGGCT
ATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTATGCCACCAAT
GTCCTCATGCAGACGGCCATCAAGACCTACGCGCTGACTACGGCGCCATC
TGGCCATGGACGCGGCCTGCAAAACTCCCATTCGGCCGATGAGCTGTACA
GGGGCCAGGATACGATGGACAGCACGGAAAACTGGCTGCCGCGAGCCAGT
TCCTTGAGCAGCATCGAGAGCTACACAGAGACGATCTACGAGCCGAGGAC
CGAGACCAAGCGACTGGTTATTCGAGAGGTTAGCGAGGAGGCGGAGTTCG
ATGATGATCCCCTGGGCGATGCCGGAGCAGCCCGTCTCCGGGACATGCCC
GTCCGGAAGGCACAACCACGTCGGGCTGCTAGCACTGCCAAGGCTGCAGG
CAAACGCGGCCAGAAACACAACGATATTGAGGGCGCCAGGAGCTCCAGCA
GCTCCAGCAATGTGATCCGCTCCCGCCGCAAGCTGCGCGAACCCACGCCC
GATGTGGATGTGGAAAACTACTGAAAGCTTTCTAGACCAT

BS08814.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-RD 1308 CG42678-PD 1..1308 17..1324 6540 100 Plus
CG42678-RO 876 CG42678-PO 1..858 17..874 4290 100 Plus
CG42678-RR 1380 CG42678-PR 1..858 17..874 4290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-RD 1573 CG42678-RD 73..1382 16..1325 6550 100 Plus
CG42678-RO 1321 CG42678-RO 73..931 16..874 4295 100 Plus
CG42678-RR 1863 CG42678-RR 73..931 16..874 4295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:52:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22926625..22927173 16..564 2745 100 Plus
2R 25286936 2R 22929086..22929538 873..1325 2265 100 Plus
2R 25286936 2R 22927250..22927448 563..761 995 100 Plus
2R 25286936 2R 22927513..22927629 758..874 585 100 Plus
Blast to na_te.dros performed 2014-11-26 21:52:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2369 175..226 125 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6823 176..226 120 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6839..6889 176..226 120 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6875..6927 179..231 112 67.9 Plus

BS08814.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:08 Download gff for BS08814.complete
Subject Subject Range Query Range Percent Splice Strand
CG30193-RD 1..1308 17..1324 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:20 Download gff for BS08814.complete
Subject Subject Range Query Range Percent Splice Strand
CG30193-RD 845..2167 11..1334 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:39:30 Download gff for BS08814.complete
Subject Subject Range Query Range Percent Splice Strand
CG42678-RD 74..1380 17..1323 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:08 Download gff for BS08814.complete
Subject Subject Range Query Range Percent Splice Strand
CG30193-RD 845..2167 11..1334 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:44:45 Download gff for BS08814.complete
Subject Subject Range Query Range Percent Splice Strand
CG42678-RD 74..1380 17..1323 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:44:45 Download gff for BS08814.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22926626..22927171 17..562 100 -> Plus
2R 22927250..22927447 563..760 100 -> Plus
2R 22927516..22927629 761..874 100 -> Plus
2R 22929088..22929536 875..1323 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:39:30 Download gff for BS08814.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18814149..18814694 17..562 100 -> Plus
arm_2R 18814773..18814970 563..760 100 -> Plus
arm_2R 18815039..18815152 761..874 100 -> Plus
arm_2R 18816611..18817059 875..1323 100   Plus

BS08814.pep Sequence

Translation from 16 to 1323

> BS08814.pep
MRPIYQQEPPLFYQRPANLRRLRHPPGTVYGRSYSLEDQPEDVIPVYPKF
IYAPQQQQQQQRAPYPLYQLGDSLSSLDSDFPENEYAGAYIVEDRVPLAN
APTPKVVQNLNALGRMLELLQRCPLPCLSFNTACICSLIVIFLAPRTCAQ
SLLFPAFRLFCGTLYPAYASYKAVRTKDVKEYVKWMMYWIVFAFFTCIET
FTDIFISWLPFYYEVKVALVFWLLSPATKGSSTLYRKFVHPMLTRHEQEI
DEYVNQAKERGYSAVLQLGSKGVNYATNVLMQTAIKTYALTTAPSGHGRG
LQNSHSADELYRGQDTMDSTENWLPRASSLSSIESYTETIYEPRTETKRL
VIREVSEEAEFDDDPLGDAGAARLRDMPVRKAQPRRAASTAKAAGKRGQK
HNDIEGARSSSSSSNVIRSRRKLREPTPDVDVENY*

BS08814.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-PD 435 CG30193-PD 1..435 1..435 2282 100 Plus
CG42678-PR 459 CG42678-PR 1..317 1..318 1526 91.8 Plus
CG42678-PQ 685 CG42678-PQ 1..317 1..318 1526 91.8 Plus
CG42678-PI 716 CG42678-PI 1..317 1..318 1526 91.8 Plus
CG42678-PO 291 CG42678-PO 1..286 1..286 1523 100 Plus