Clone BS08816 Report

Search the DGRC for BS08816

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG3376-RA
Protein status:BS08816.pep: full length peptide match
Sequenced Size:2240

Clone Sequence Records

BS08816.3prime Sequence

890 bp (846 high quality bases) assembled on 2006-01-18

> BS08816.3prime
ATGGTCTAGAAAGCTTTCAACCACCAACGTTAACAATCACCACATCGAAA
GGCCCATAGCCATCGGTGGTGGGGGCCGGCTCTTCAGTCCGATCCTCGGC
GGAATTGGTCAATCCCTTGTAGAACCAGGACTTCCATGACTTGGAAGACT
CCTCGTCGATCTTCGACTCGACCTCGGCACAGAAGTGCTTCCGATCGTGG
GAACGCCCACTCCGACAGTCGCAGATGAGCCTCTTCTTGCACTCCGCATC
GCAGGTGGGTCGCGCCGGGGAGTTCTTCCAGTAGTATTTGTAGTACAGCT
CGAATAGCTCCTGATTATTGGTCAGCTCGTTGAGCAGGTTGTTCCAATCA
CTGGGACGCAGGGCTTTCATGTTATATGCCGCTCGGGCTGTGTAGAGCTT
GTACCAAATGGGGTAGCCATACAGGTTGGCCTCCTTGAGGTTCATTATCC
AGGACTCGTGGTCGATGACCAGGCGCGTCGTGGCATCATGATCGCCATCC
ACGTAGTAGATACGATAGCCGGGGTTCAGATCGTAATAGGGCGATACAGA
GGGACCTATGTACGCAATGCCGTTGGGATGGTTCAGATCGTGCGGATCGT
AGAACATTTCAAACTCATCGTAGTGCGTGTGTCCATAAAACTGAGCAGTC
ACTGTGCTCTCATAGCGCGATATGATCTTGTAGAAGTTGCGAGACCAGAC
CTTCAGGCAGTCCGAGTGTCCTGGTGGAATGTGACCTATGACGTGCACCT
TTTCGTTGGAGAACTCCGCACTTTGCAGCTCGTAAATGAACCATTGTAGC
TCAGTGGCGGGATCCGTGGAGTTGAGCAGTAGCCACCAGTTCTTGTTGTT
GCAGTAGTTCATGTTCAGCGAGATGATCCTGAATCCAGGT

BS08816.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3376-PA 2208 CG3376-RA 1335..2208 890..17 4370 100 Minus
CG3376-PB 2127 CG3376-RB 1335..2123 890..102 3945 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3376-RC 2880 CG3376-RC 1919..2792 890..17 4370 100 Minus
CG3376-RA 2827 CG3376-RA 1866..2739 890..17 4370 100 Minus
CG3376-RD 3086 CG3376-RD 1866..2655 890..101 3950 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24263803..24264097 582..288 1475 100 Minus
2R 25286936 2R 24263535..24263744 792..583 1050 100 Minus
2R 25286936 2R 24264160..24264345 287..102 930 100 Minus
2R 25286936 2R 24263383..24263483 890..790 505 100 Minus
2R 25286936 2R 24264586..24264670 101..17 425 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:10:13 has no hits.

BS08816.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:55 Download gff for BS08816.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3376-PA 1335..2208 17..890 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:09 Download gff for BS08816.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3376-PA 1335..2208 17..890 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:27:42 Download gff for BS08816.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3376-RA 1866..2742 10..890 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:01 Download gff for BS08816.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3376-RA 1866..2742 10..890 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:01 Download gff for BS08816.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24263536..24263744 583..791 100 -> Minus
2R 24263383..24263481 792..890 100 -> Minus
2R 24263803..24264097 288..582 100 -> Minus
2R 24264160..24264345 102..287 100 -> Minus
2R 24264586..24264673 10..101 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:27:42 Download gff for BS08816.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20150906..20151004 792..890 100 -> Minus
arm_2R 20151059..20151267 583..791 100 -> Minus
arm_2R 20151326..20151620 288..582 100 -> Minus
arm_2R 20151683..20151868 102..287 100 -> Minus
arm_2R 20152109..20152196 10..101 95   Minus

BS08816.5prime Sequence

977 bp (825 high quality bases) assembled on 2006-01-18

> BS08816.5prime
GAAGTTATCAGTCGACATGACACAGCAACAGCCGCCGTGGCCAAGTCCCA
TTTCCAGCTCCAGTTCCAATCCCAGGGGAAAATGCTGGCTCATCCTCGTA
CTTATGGCTGTGCTCCCACTGGTGGCAGATGTTGGAGCCCTGCCCTTCCT
GTTCACGCACATCAAGCCGCAGATCAACTGGACGCAGCCGGAGATGGAGA
GCTGGGTAATTGAGGAGCAGCCGCGCAGCATCGAGCCCCACCTGGAGCCA
GTGCTCCATCCGAATCGCACGCACCGCGCTCTGTCTTCGGACAGCACGGA
TGCGGAGTTCCTGCAGAGGTTGGTCAGCATCAGGCACAACCAGACGGCCA
GTTCCAGGATGCTGTGGTACGACGTGGCCGGCGGAGATGGGCTGGTGTAC
CCACCGTTCGTGGACAAGGCCCTCAAGCTGCTGAACCTCAAGCAGGTGGC
CTTTGAGATCGAAAACAGCGTGATGTCCAAGGTGACCTGCACCGCCTGCA
GAGCGGGAGCCGGGATGCTGCAGCATCAGATCCAGTCGGGCAAGACGGAT
GCGGAGCTCATTCGCATGATCACGGACTACTGCACCAATCTGAACATCCA
GAGTGCCCGGGTCTGCCAGGGCGTAGCCCAACTCTTCGGCAGCGAGCTGA
TATACGTGCTGAAGAGGGTCAATCTGAGTCCTGATGAACTCTGCAGCTTT
GTGATTGGCGATGGTTGTGCGGACGTGTACAATCCCTATCACGAGTGGGA
GGTCATATTCCCACCAGTGCCCAAGCCACCTCGCCTCCCAGATCTGCCCA
TTCCCATGGAGGCGGCTCCCTTCTTCAAGGTCCTGCACATTTCCGATACC
CACTACGATCCCCACTACGCGGAGGGATCGAATGCGGACTGCAATGAGCC
GCTTTGCTGCCGACTGAGCAGCGGTCGTCCGGCCACGCCCAATGCAGCTG
CCGGAAAGTGGGGCGACTACTGCAAGT

BS08816.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3376-PA 2208 CG3376-RA 1..961 17..977 4780 99.8 Plus
CG3376-PB 2127 CG3376-RB 1..961 17..977 4780 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3376-RC 2880 CG3376-RC 585..1545 17..977 4790 99.9 Plus
CG3376-RD 3086 CG3376-RD 532..1492 17..977 4790 99.9 Plus
CG3376-RB 3522 CG3376-RB 532..1492 17..977 4790 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24262163..24263009 131..977 4220 99.9 Plus
2R 25286936 2R 24261994..24262108 17..131 575 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:39:16 has no hits.

BS08816.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:56 Download gff for BS08816.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3376-PA 1..961 17..977 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:11 Download gff for BS08816.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3376-PB 1..961 17..977 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:10 Download gff for BS08816.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3376-RB 532..1492 17..977 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:58 Download gff for BS08816.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3376-RB 532..1492 17..977 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:58 Download gff for BS08816.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24261994..24262108 17..131 100 -> Plus
2R 24262164..24263009 132..977 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:10 Download gff for BS08816.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20149517..20149631 17..131 100 -> Plus
arm_2R 20149687..20150532 132..977 99   Plus

BS08816.complete Sequence

2240 bp assembled on 2008-08-14

GenBank Submission: FJ636275

> BS08816.complete
GAAGTTATCAGTCGACATGACACAGCAACAGCCGCCGTGGCCAAGTCCCA
TTTCCAGCTCCAGTTCCAATCCCAGGGGAAAATGCTGGCTCATCCTCGTA
CTTATGGCTGTGCTCCCACTGGTGGCAGATGTTGGAGCCCTGCCCTTCCT
GTTCACGCACATCAAGCCGCAGATCAACTGGACGCAGCCGGAGATGGAGA
GCTGGGTAATTGAGGAGCAGCCGCGCAGCATCGAGCCCCACCTGGAGCCA
GTGCTCCATCCGAATCGCACGCACCGCGCTCTGTCTTCGGACAGCACGGA
TGCGGAGTTCCTGCAGAGGTTGGTCAGCATCAGGCACAACCAGACGGCCA
GTTCCAGGATGCTGTGGTACGACGTGGCCGGCGGAGATGGGCTGGTGTAC
CCACCGTTCGTGGACAAGGCCCTCAAGCTGCTGAACCTCAAGCAGGTGGC
CTTTGAGATCGAAAACAGCGTGATGTCCAAGGTGACCTGCACCGCCTGCA
GAGCGGGAGCCGGGATGCTGCAGCATCAGATCCAGTCGGGCAAGACGGAT
GCGGAGCTCATTCGCATGATCACGGACTACTGCACCAATCTGAACATCCA
GAGTGCCCGGGTCTGCCAGGGCGTAGCCCAACTCTTCGGCAGCGAGCTGA
TATACGTGCTGAAGAGGGTCAATCTGAGTCCTGATGAACTCTGCAGCTTT
GTGATTGGCGATGGTTGTGCGGACGTGTACAATCCCTATCACGAGTGGGA
GGTCATATTCCCACCAGTGCCCAAGCCACCTCGCCTCCCAGATCTGCCCA
TTCCCATGGAGGCGGCTCCCTTCTTCAAGGTCCTGCACATTTCCGATACC
CACTACGATCCCCACTACGCGGAGGGATCGAATGCGGACTGCAATGAGCC
GCTTTGCTGCCGACTGAGCAGCGGTCGTCCGGCCACGCCCAATGCAGCTG
CCGGAAAGTGGGGCGACTACCGCAAGTGCGACACCCCGAAGAGGACGGTG
GACCACATGTTGTCCCACATAGCGGAGACCCACAAGGACATCGACTACAT
TCTATGGACGGGCGATCTGCCTCCGCACGACGTGTGGAACCAAACCAAGG
AGGAGAACCTGGCCATCATTAAGGACACTGTGAAACAGATGGTCGAAATG
TTCCCGGGAGTCCCCATCTTCCCTGCTCTGGGCAACCACGAAAGCGCACC
GGTGAACAGCTTCCCACCGCCGTACGTTAACCAGGTGGACATATCTATTA
GTTGGCTATACGACGAACTGGACATCCAGTGGCGCAGGTGGCTGCCCCAA
AGTGTGACCCACACGGTGCGGCGCGGTGCCTTCTACTCGGTGCTGGTTCG
ACCTGGATTCAGGATCATCTCGCTGAACATGAACTACTGCAACAACAAGA
ACTGGTGGCTACTGCTCAACTCCACGGATCCCGCCACTGAGCTACAATGG
TTCATTTACGAGCTGCAAAGTGCGGAGTTCTCCAACGAAAAGGTGCACGT
CATAGGTCACATTCCACCAGGACACTCGGACTGCCTGAAGGTCTGGTCTC
GCAACTTCTACAAGATCATATCGCGCTATGAGAGCACAGTGACTGCTCAG
TTTTATGGACACACGCACTACGATGAGTTTGAAATGTTCTACGATCCGCA
CGATCTGAACCATCCCAACGGCATTGCGTACATAGGTCCCTCTGTATCGC
CCTATTACGATCTGAACCCCGGCTATCGTATCTACTACGTGGATGGCGAT
CATGATGCCACGACGCGCCTGGTCATCGACCACGAGTCCTGGATAATGAA
CCTCAAGGAGGCCAACCTGTATGGCTACCCCATTTGGTACAAGCTCTACA
CAGCCCGAGCGGCATATAACATGAAAGCCCTGCGTCCCAGTGATTGGAAC
AACCTGCTCAACGAGCTGACCAATAATCAGGAGCTATTCGAGCTGTACTA
CAAATACTACTGGAAGAACTCCCCGGCGCGACCCACCTGCGATGCGGAGT
GCAAGAAGAGGCTCATCTGCGACTGTCGGAGTGGGCGTTCCCACGATCGG
AAGCACTTCTGTGCCGAGGTCGAGTCGAAGATCGACGAGGAGTCTTCCAA
GTCATGGAAGTCCTGGTTCTACAAGGGATTGACCAATTCCGCCGAGGATC
GGACTGAAGAGCCGGCCCCCACCACCGATGGCTATGGGCCTTTCGATGTG
GTGATTGTTAACGTTGGTGGTTGAAAGCTTTCTAGACCAT

BS08816.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3376-RC 2295 CG3376-PC 88..2295 17..2224 11040 100 Plus
CG3376-RA 2208 CG3376-PA 1..2208 17..2224 11040 100 Plus
CG3376-RD 2181 CG3376-PD 1..2124 17..2140 10620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3376-RC 2880 CG3376-RC 585..2792 17..2224 11040 100 Plus
CG3376-RA 2827 CG3376-RA 532..2739 17..2224 11040 100 Plus
CG3376-RD 3086 CG3376-RD 532..2655 17..2140 10620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24262163..24263483 131..1451 6605 100 Plus
2R 25286936 2R 24263803..24264097 1659..1953 1475 100 Plus
2R 25286936 2R 24263535..24263744 1449..1658 1050 100 Plus
2R 25286936 2R 24264160..24264345 1954..2139 930 100 Plus
2R 25286936 2R 24261994..24262108 17..131 575 100 Plus
2R 25286936 2R 24264586..24264670 2140..2224 425 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:56:27 has no hits.

BS08816.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:13 Download gff for BS08816.complete
Subject Subject Range Query Range Percent Splice Strand
CG3376-RA 516..2726 17..2231 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:14 Download gff for BS08816.complete
Subject Subject Range Query Range Percent Splice Strand
CG3376-RA 532..2738 17..2223 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:20 Download gff for BS08816.complete
Subject Subject Range Query Range Percent Splice Strand
CG3376-RA 516..2722 17..2223 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:36 Download gff for BS08816.complete
Subject Subject Range Query Range Percent Splice Strand
CG3376-RA 532..2738 17..2223 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:36 Download gff for BS08816.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24261994..24262108 17..131 100 -> Plus
2R 24262164..24263481 132..1449 100 -> Plus
2R 24263536..24263744 1450..1658 100 -> Plus
2R 24263803..24264097 1659..1953 100 -> Plus
2R 24264160..24264345 1954..2139 100 -> Plus
2R 24264586..24264669 2140..2223 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:14 Download gff for BS08816.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20152109..20152192 2140..2223 100   Plus
arm_2R 20151326..20151620 1659..1953 100 -> Plus
arm_2R 20151683..20151868 1954..2139 100 -> Plus
arm_2R 20149517..20149631 17..131 100 -> Plus
arm_2R 20149687..20151004 132..1449 100 -> Plus
arm_2R 20151059..20151267 1450..1658 100 -> Plus

BS08816.pep Sequence

Translation from 16 to 2223

> BS08816.pep
MTQQQPPWPSPISSSSSNPRGKCWLILVLMAVLPLVADVGALPFLFTHIK
PQINWTQPEMESWVIEEQPRSIEPHLEPVLHPNRTHRALSSDSTDAEFLQ
RLVSIRHNQTASSRMLWYDVAGGDGLVYPPFVDKALKLLNLKQVAFEIEN
SVMSKVTCTACRAGAGMLQHQIQSGKTDAELIRMITDYCTNLNIQSARVC
QGVAQLFGSELIYVLKRVNLSPDELCSFVIGDGCADVYNPYHEWEVIFPP
VPKPPRLPDLPIPMEAAPFFKVLHISDTHYDPHYAEGSNADCNEPLCCRL
SSGRPATPNAAAGKWGDYRKCDTPKRTVDHMLSHIAETHKDIDYILWTGD
LPPHDVWNQTKEENLAIIKDTVKQMVEMFPGVPIFPALGNHESAPVNSFP
PPYVNQVDISISWLYDELDIQWRRWLPQSVTHTVRRGAFYSVLVRPGFRI
ISLNMNYCNNKNWWLLLNSTDPATELQWFIYELQSAEFSNEKVHVIGHIP
PGHSDCLKVWSRNFYKIISRYESTVTAQFYGHTHYDEFEMFYDPHDLNHP
NGIAYIGPSVSPYYDLNPGYRIYYVDGDHDATTRLVIDHESWIMNLKEAN
LYGYPIWYKLYTARAAYNMKALRPSDWNNLLNELTNNQELFELYYKYYWK
NSPARPTCDAECKKRLICDCRSGRSHDRKHFCAEVESKIDEESSKSWKSW
FYKGLTNSAEDRTEEPAPTTDGYGPFDVVIVNVGG*

BS08816.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3376-PC 764 CG3376-PC 30..764 1..735 4046 100 Plus
CG3376-PA 735 CG3376-PA 1..735 1..735 4046 100 Plus
CG3376-PD 726 CG3376-PD 1..708 1..708 3901 100 Plus
CG3376-PB 708 CG3376-PB 1..708 1..708 3901 100 Plus
CG15533-PA 692 CG15533-PA 99..660 158..722 802 32.2 Plus