Clone Sequence Records
BS08816.3prime Sequence
890 bp (846 high quality bases) assembled on 2006-01-18
> BS08816.3prime
ATGGTCTAGAAAGCTTTCAACCACCAACGTTAACAATCACCACATCGAAA
GGCCCATAGCCATCGGTGGTGGGGGCCGGCTCTTCAGTCCGATCCTCGGC
GGAATTGGTCAATCCCTTGTAGAACCAGGACTTCCATGACTTGGAAGACT
CCTCGTCGATCTTCGACTCGACCTCGGCACAGAAGTGCTTCCGATCGTGG
GAACGCCCACTCCGACAGTCGCAGATGAGCCTCTTCTTGCACTCCGCATC
GCAGGTGGGTCGCGCCGGGGAGTTCTTCCAGTAGTATTTGTAGTACAGCT
CGAATAGCTCCTGATTATTGGTCAGCTCGTTGAGCAGGTTGTTCCAATCA
CTGGGACGCAGGGCTTTCATGTTATATGCCGCTCGGGCTGTGTAGAGCTT
GTACCAAATGGGGTAGCCATACAGGTTGGCCTCCTTGAGGTTCATTATCC
AGGACTCGTGGTCGATGACCAGGCGCGTCGTGGCATCATGATCGCCATCC
ACGTAGTAGATACGATAGCCGGGGTTCAGATCGTAATAGGGCGATACAGA
GGGACCTATGTACGCAATGCCGTTGGGATGGTTCAGATCGTGCGGATCGT
AGAACATTTCAAACTCATCGTAGTGCGTGTGTCCATAAAACTGAGCAGTC
ACTGTGCTCTCATAGCGCGATATGATCTTGTAGAAGTTGCGAGACCAGAC
CTTCAGGCAGTCCGAGTGTCCTGGTGGAATGTGACCTATGACGTGCACCT
TTTCGTTGGAGAACTCCGCACTTTGCAGCTCGTAAATGAACCATTGTAGC
TCAGTGGCGGGATCCGTGGAGTTGAGCAGTAGCCACCAGTTCTTGTTGTT
GCAGTAGTTCATGTTCAGCGAGATGATCCTGAATCCAGGT
BS08816.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3376-PA | 2208 | CG3376-RA | 1335..2208 | 890..17 | 4370 | 100 | Minus |
CG3376-PB | 2127 | CG3376-RB | 1335..2123 | 890..102 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3376-RC | 2880 | CG3376-RC | 1919..2792 | 890..17 | 4370 | 100 | Minus |
CG3376-RA | 2827 | CG3376-RA | 1866..2739 | 890..17 | 4370 | 100 | Minus |
CG3376-RD | 3086 | CG3376-RD | 1866..2655 | 890..101 | 3950 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24263803..24264097 | 582..288 | 1475 | 100 | Minus |
2R | 25286936 | 2R | 24263535..24263744 | 792..583 | 1050 | 100 | Minus |
2R | 25286936 | 2R | 24264160..24264345 | 287..102 | 930 | 100 | Minus |
2R | 25286936 | 2R | 24263383..24263483 | 890..790 | 505 | 100 | Minus |
2R | 25286936 | 2R | 24264586..24264670 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:10:13 has no hits.
BS08816.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:55 Download gff for
BS08816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3376-PA | 1335..2208 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:09 Download gff for
BS08816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3376-PA | 1335..2208 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:27:42 Download gff for
BS08816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3376-RA | 1866..2742 | 10..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:01 Download gff for
BS08816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3376-RA | 1866..2742 | 10..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:01 Download gff for
BS08816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24263536..24263744 | 583..791 | 100 | -> | Minus |
2R | 24263383..24263481 | 792..890 | 100 | -> | Minus |
2R | 24263803..24264097 | 288..582 | 100 | -> | Minus |
2R | 24264160..24264345 | 102..287 | 100 | -> | Minus |
2R | 24264586..24264673 | 10..101 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:27:42 Download gff for
BS08816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20150906..20151004 | 792..890 | 100 | -> | Minus |
arm_2R | 20151059..20151267 | 583..791 | 100 | -> | Minus |
arm_2R | 20151326..20151620 | 288..582 | 100 | -> | Minus |
arm_2R | 20151683..20151868 | 102..287 | 100 | -> | Minus |
arm_2R | 20152109..20152196 | 10..101 | 95 | | Minus |
BS08816.5prime Sequence
977 bp (825 high quality bases) assembled on 2006-01-18
> BS08816.5prime
GAAGTTATCAGTCGACATGACACAGCAACAGCCGCCGTGGCCAAGTCCCA
TTTCCAGCTCCAGTTCCAATCCCAGGGGAAAATGCTGGCTCATCCTCGTA
CTTATGGCTGTGCTCCCACTGGTGGCAGATGTTGGAGCCCTGCCCTTCCT
GTTCACGCACATCAAGCCGCAGATCAACTGGACGCAGCCGGAGATGGAGA
GCTGGGTAATTGAGGAGCAGCCGCGCAGCATCGAGCCCCACCTGGAGCCA
GTGCTCCATCCGAATCGCACGCACCGCGCTCTGTCTTCGGACAGCACGGA
TGCGGAGTTCCTGCAGAGGTTGGTCAGCATCAGGCACAACCAGACGGCCA
GTTCCAGGATGCTGTGGTACGACGTGGCCGGCGGAGATGGGCTGGTGTAC
CCACCGTTCGTGGACAAGGCCCTCAAGCTGCTGAACCTCAAGCAGGTGGC
CTTTGAGATCGAAAACAGCGTGATGTCCAAGGTGACCTGCACCGCCTGCA
GAGCGGGAGCCGGGATGCTGCAGCATCAGATCCAGTCGGGCAAGACGGAT
GCGGAGCTCATTCGCATGATCACGGACTACTGCACCAATCTGAACATCCA
GAGTGCCCGGGTCTGCCAGGGCGTAGCCCAACTCTTCGGCAGCGAGCTGA
TATACGTGCTGAAGAGGGTCAATCTGAGTCCTGATGAACTCTGCAGCTTT
GTGATTGGCGATGGTTGTGCGGACGTGTACAATCCCTATCACGAGTGGGA
GGTCATATTCCCACCAGTGCCCAAGCCACCTCGCCTCCCAGATCTGCCCA
TTCCCATGGAGGCGGCTCCCTTCTTCAAGGTCCTGCACATTTCCGATACC
CACTACGATCCCCACTACGCGGAGGGATCGAATGCGGACTGCAATGAGCC
GCTTTGCTGCCGACTGAGCAGCGGTCGTCCGGCCACGCCCAATGCAGCTG
CCGGAAAGTGGGGCGACTACTGCAAGT
BS08816.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3376-PA | 2208 | CG3376-RA | 1..961 | 17..977 | 4780 | 99.8 | Plus |
CG3376-PB | 2127 | CG3376-RB | 1..961 | 17..977 | 4780 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3376-RC | 2880 | CG3376-RC | 585..1545 | 17..977 | 4790 | 99.9 | Plus |
CG3376-RD | 3086 | CG3376-RD | 532..1492 | 17..977 | 4790 | 99.9 | Plus |
CG3376-RB | 3522 | CG3376-RB | 532..1492 | 17..977 | 4790 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24262163..24263009 | 131..977 | 4220 | 99.9 | Plus |
2R | 25286936 | 2R | 24261994..24262108 | 17..131 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:39:16 has no hits.
BS08816.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:56 Download gff for
BS08816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3376-PA | 1..961 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:11 Download gff for
BS08816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3376-PB | 1..961 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:10 Download gff for
BS08816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3376-RB | 532..1492 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:20:58 Download gff for
BS08816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3376-RB | 532..1492 | 17..977 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:20:58 Download gff for
BS08816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24261994..24262108 | 17..131 | 100 | -> | Plus |
2R | 24262164..24263009 | 132..977 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:10 Download gff for
BS08816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20149517..20149631 | 17..131 | 100 | -> | Plus |
arm_2R | 20149687..20150532 | 132..977 | 99 | | Plus |
BS08816.complete Sequence
2240 bp assembled on 2008-08-14
GenBank Submission: FJ636275
> BS08816.complete
GAAGTTATCAGTCGACATGACACAGCAACAGCCGCCGTGGCCAAGTCCCA
TTTCCAGCTCCAGTTCCAATCCCAGGGGAAAATGCTGGCTCATCCTCGTA
CTTATGGCTGTGCTCCCACTGGTGGCAGATGTTGGAGCCCTGCCCTTCCT
GTTCACGCACATCAAGCCGCAGATCAACTGGACGCAGCCGGAGATGGAGA
GCTGGGTAATTGAGGAGCAGCCGCGCAGCATCGAGCCCCACCTGGAGCCA
GTGCTCCATCCGAATCGCACGCACCGCGCTCTGTCTTCGGACAGCACGGA
TGCGGAGTTCCTGCAGAGGTTGGTCAGCATCAGGCACAACCAGACGGCCA
GTTCCAGGATGCTGTGGTACGACGTGGCCGGCGGAGATGGGCTGGTGTAC
CCACCGTTCGTGGACAAGGCCCTCAAGCTGCTGAACCTCAAGCAGGTGGC
CTTTGAGATCGAAAACAGCGTGATGTCCAAGGTGACCTGCACCGCCTGCA
GAGCGGGAGCCGGGATGCTGCAGCATCAGATCCAGTCGGGCAAGACGGAT
GCGGAGCTCATTCGCATGATCACGGACTACTGCACCAATCTGAACATCCA
GAGTGCCCGGGTCTGCCAGGGCGTAGCCCAACTCTTCGGCAGCGAGCTGA
TATACGTGCTGAAGAGGGTCAATCTGAGTCCTGATGAACTCTGCAGCTTT
GTGATTGGCGATGGTTGTGCGGACGTGTACAATCCCTATCACGAGTGGGA
GGTCATATTCCCACCAGTGCCCAAGCCACCTCGCCTCCCAGATCTGCCCA
TTCCCATGGAGGCGGCTCCCTTCTTCAAGGTCCTGCACATTTCCGATACC
CACTACGATCCCCACTACGCGGAGGGATCGAATGCGGACTGCAATGAGCC
GCTTTGCTGCCGACTGAGCAGCGGTCGTCCGGCCACGCCCAATGCAGCTG
CCGGAAAGTGGGGCGACTACCGCAAGTGCGACACCCCGAAGAGGACGGTG
GACCACATGTTGTCCCACATAGCGGAGACCCACAAGGACATCGACTACAT
TCTATGGACGGGCGATCTGCCTCCGCACGACGTGTGGAACCAAACCAAGG
AGGAGAACCTGGCCATCATTAAGGACACTGTGAAACAGATGGTCGAAATG
TTCCCGGGAGTCCCCATCTTCCCTGCTCTGGGCAACCACGAAAGCGCACC
GGTGAACAGCTTCCCACCGCCGTACGTTAACCAGGTGGACATATCTATTA
GTTGGCTATACGACGAACTGGACATCCAGTGGCGCAGGTGGCTGCCCCAA
AGTGTGACCCACACGGTGCGGCGCGGTGCCTTCTACTCGGTGCTGGTTCG
ACCTGGATTCAGGATCATCTCGCTGAACATGAACTACTGCAACAACAAGA
ACTGGTGGCTACTGCTCAACTCCACGGATCCCGCCACTGAGCTACAATGG
TTCATTTACGAGCTGCAAAGTGCGGAGTTCTCCAACGAAAAGGTGCACGT
CATAGGTCACATTCCACCAGGACACTCGGACTGCCTGAAGGTCTGGTCTC
GCAACTTCTACAAGATCATATCGCGCTATGAGAGCACAGTGACTGCTCAG
TTTTATGGACACACGCACTACGATGAGTTTGAAATGTTCTACGATCCGCA
CGATCTGAACCATCCCAACGGCATTGCGTACATAGGTCCCTCTGTATCGC
CCTATTACGATCTGAACCCCGGCTATCGTATCTACTACGTGGATGGCGAT
CATGATGCCACGACGCGCCTGGTCATCGACCACGAGTCCTGGATAATGAA
CCTCAAGGAGGCCAACCTGTATGGCTACCCCATTTGGTACAAGCTCTACA
CAGCCCGAGCGGCATATAACATGAAAGCCCTGCGTCCCAGTGATTGGAAC
AACCTGCTCAACGAGCTGACCAATAATCAGGAGCTATTCGAGCTGTACTA
CAAATACTACTGGAAGAACTCCCCGGCGCGACCCACCTGCGATGCGGAGT
GCAAGAAGAGGCTCATCTGCGACTGTCGGAGTGGGCGTTCCCACGATCGG
AAGCACTTCTGTGCCGAGGTCGAGTCGAAGATCGACGAGGAGTCTTCCAA
GTCATGGAAGTCCTGGTTCTACAAGGGATTGACCAATTCCGCCGAGGATC
GGACTGAAGAGCCGGCCCCCACCACCGATGGCTATGGGCCTTTCGATGTG
GTGATTGTTAACGTTGGTGGTTGAAAGCTTTCTAGACCAT
BS08816.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3376-RC | 2295 | CG3376-PC | 88..2295 | 17..2224 | 11040 | 100 | Plus |
CG3376-RA | 2208 | CG3376-PA | 1..2208 | 17..2224 | 11040 | 100 | Plus |
CG3376-RD | 2181 | CG3376-PD | 1..2124 | 17..2140 | 10620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3376-RC | 2880 | CG3376-RC | 585..2792 | 17..2224 | 11040 | 100 | Plus |
CG3376-RA | 2827 | CG3376-RA | 532..2739 | 17..2224 | 11040 | 100 | Plus |
CG3376-RD | 3086 | CG3376-RD | 532..2655 | 17..2140 | 10620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24262163..24263483 | 131..1451 | 6605 | 100 | Plus |
2R | 25286936 | 2R | 24263803..24264097 | 1659..1953 | 1475 | 100 | Plus |
2R | 25286936 | 2R | 24263535..24263744 | 1449..1658 | 1050 | 100 | Plus |
2R | 25286936 | 2R | 24264160..24264345 | 1954..2139 | 930 | 100 | Plus |
2R | 25286936 | 2R | 24261994..24262108 | 17..131 | 575 | 100 | Plus |
2R | 25286936 | 2R | 24264586..24264670 | 2140..2224 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:56:27 has no hits.
BS08816.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:13 Download gff for
BS08816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3376-RA | 516..2726 | 17..2231 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:14 Download gff for
BS08816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3376-RA | 532..2738 | 17..2223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:23:20 Download gff for
BS08816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3376-RA | 516..2722 | 17..2223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:36 Download gff for
BS08816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3376-RA | 532..2738 | 17..2223 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:36 Download gff for
BS08816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24261994..24262108 | 17..131 | 100 | -> | Plus |
2R | 24262164..24263481 | 132..1449 | 100 | -> | Plus |
2R | 24263536..24263744 | 1450..1658 | 100 | -> | Plus |
2R | 24263803..24264097 | 1659..1953 | 100 | -> | Plus |
2R | 24264160..24264345 | 1954..2139 | 100 | -> | Plus |
2R | 24264586..24264669 | 2140..2223 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:14 Download gff for
BS08816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20152109..20152192 | 2140..2223 | 100 | | Plus |
arm_2R | 20151326..20151620 | 1659..1953 | 100 | -> | Plus |
arm_2R | 20151683..20151868 | 1954..2139 | 100 | -> | Plus |
arm_2R | 20149517..20149631 | 17..131 | 100 | -> | Plus |
arm_2R | 20149687..20151004 | 132..1449 | 100 | -> | Plus |
arm_2R | 20151059..20151267 | 1450..1658 | 100 | -> | Plus |
BS08816.pep Sequence
Translation from 16 to 2223
> BS08816.pep
MTQQQPPWPSPISSSSSNPRGKCWLILVLMAVLPLVADVGALPFLFTHIK
PQINWTQPEMESWVIEEQPRSIEPHLEPVLHPNRTHRALSSDSTDAEFLQ
RLVSIRHNQTASSRMLWYDVAGGDGLVYPPFVDKALKLLNLKQVAFEIEN
SVMSKVTCTACRAGAGMLQHQIQSGKTDAELIRMITDYCTNLNIQSARVC
QGVAQLFGSELIYVLKRVNLSPDELCSFVIGDGCADVYNPYHEWEVIFPP
VPKPPRLPDLPIPMEAAPFFKVLHISDTHYDPHYAEGSNADCNEPLCCRL
SSGRPATPNAAAGKWGDYRKCDTPKRTVDHMLSHIAETHKDIDYILWTGD
LPPHDVWNQTKEENLAIIKDTVKQMVEMFPGVPIFPALGNHESAPVNSFP
PPYVNQVDISISWLYDELDIQWRRWLPQSVTHTVRRGAFYSVLVRPGFRI
ISLNMNYCNNKNWWLLLNSTDPATELQWFIYELQSAEFSNEKVHVIGHIP
PGHSDCLKVWSRNFYKIISRYESTVTAQFYGHTHYDEFEMFYDPHDLNHP
NGIAYIGPSVSPYYDLNPGYRIYYVDGDHDATTRLVIDHESWIMNLKEAN
LYGYPIWYKLYTARAAYNMKALRPSDWNNLLNELTNNQELFELYYKYYWK
NSPARPTCDAECKKRLICDCRSGRSHDRKHFCAEVESKIDEESSKSWKSW
FYKGLTNSAEDRTEEPAPTTDGYGPFDVVIVNVGG*
BS08816.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3376-PC | 764 | CG3376-PC | 30..764 | 1..735 | 4046 | 100 | Plus |
CG3376-PA | 735 | CG3376-PA | 1..735 | 1..735 | 4046 | 100 | Plus |
CG3376-PD | 726 | CG3376-PD | 1..708 | 1..708 | 3901 | 100 | Plus |
CG3376-PB | 708 | CG3376-PB | 1..708 | 1..708 | 3901 | 100 | Plus |
CG15533-PA | 692 | CG15533-PA | 99..660 | 158..722 | 802 | 32.2 | Plus |