Clone Sequence Records
BS08817.3prime Sequence
946 bp (792 high quality bases) assembled on 2006-01-18
> BS08817.3prime
ATGGTCTAGAAAGCTTTCACGATGGCTGCTCCTTTATCTCAGTCTCGCAG
TTGGCTGTGGCCAGCGGTTTCAGTTGCTGTTTTTCTTCCGTTTCATTTCG
TTCCGGCTGTTGCTCCCCCTCCTCCTCGCTGTCCTCGCGCACAATAAGAT
CGTGTGGCTCCCTGGAGGCCTTGCGTTTGCCCCGCTGCTCCTCAAATAGA
TCCGGCTTGCGGCAGACCCAGAAAAGACTCTGGTACTCGCTCTGTTTCAT
TGAAGACGGGTTCTGTGCGTACTTGGTACGGATGCCGGTGCGTGATTTCT
CGATAACGAATCCTACGCTTTCCATGATAATGCAAAGGTCCTCGAAAGCC
GGCTCGATGCTGTTTTGCCCGCTGACGTCGCTAAAATGGTACAGCAGCGG
CCCGAGATTCACCCAAATGCCACCAGGCACGAGGATTTTGTAAATTGTGC
GTATGAAGTCAATAACATTATTGGCACAATCGATGAAGAAGCACGTAGCC
ACGCAGTTGTAGGCGTTCGGCGTCTTGTAGACCTCCAGAAAGTCGCCAGC
TGCTATTTCAAAATGGCCCTTGGGTGGATTTTTAAGCGGGCAGACGTCTG
GGAAACGAACGGGGGCCACCTGATCCTCACGCCTTAAGTTATTCACATAC
TGGTGCACCCACGGATATAACACGTACTTGTTCTCGTTGTCGCAGAGGTT
GAGGACAAAATTGGAGGCGATCAGCATGAAGTAGGAAAACTCGTTGCCCT
CGCACGAGTACCCCAAGCAGGCAAGCTCGTAGGTGAGCCGTCCCAACCCC
GCTCCCGGCACTAGGATCTTTATATCCTTCAGCTCGAAATCGCTGTGCTT
GAAGTACGCAACGATGCTGTCGATGATCGGTTTATACGATTGCTCCCGTT
CTAAGGCTCCTTCAGTGCTCCAGTCGCGCGCAATCAACTTCAACGT
BS08817.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11596-PB | 1206 | CG11596-RB | 277..1206 | 946..17 | 4650 | 100 | Minus |
CG11596-PC | 1371 | CG11596-RC | 442..1371 | 946..17 | 4650 | 100 | Minus |
CG11596-PA | 1320 | CG11596-RA | 391..1320 | 946..17 | 4650 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:09:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11596-RE | 1765 | CG11596-RE | 519..1452 | 946..13 | 4655 | 99.9 | Minus |
CG11596-RD | 1544 | CG11596-RD | 298..1231 | 946..13 | 4655 | 99.9 | Minus |
CG11596-RA | 1747 | CG11596-RA | 494..1427 | 946..13 | 4655 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:09:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1929773..1930197 | 437..13 | 2110 | 99.8 | Minus |
X | 23542271 | X | 1929454..1929711 | 695..438 | 1290 | 100 | Minus |
X | 23542271 | X | 1929244..1929384 | 836..696 | 705 | 100 | Minus |
X | 23542271 | X | 1929061..1929170 | 946..837 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:09:33 has no hits.
BS08817.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:57 Download gff for
BS08817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-PA | 391..1320 | 17..946 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:12 Download gff for
BS08817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-PA | 391..1320 | 17..946 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:32:31 Download gff for
BS08817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 494..1433 | 5..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:27 Download gff for
BS08817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 494..1433 | 5..946 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:27 Download gff for
BS08817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1929454..1929711 | 438..695 | 100 | -> | Minus |
X | 1929773..1930203 | 5..437 | 98 | | Minus |
X | 1929061..1929170 | 837..946 | 100 | -> | Minus |
X | 1929244..1929384 | 696..836 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:32:31 Download gff for
BS08817.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1823094..1823203 | 837..946 | 100 | -> | Minus |
arm_X | 1823277..1823417 | 696..836 | 100 | -> | Minus |
arm_X | 1823487..1823744 | 438..695 | 100 | -> | Minus |
arm_X | 1823806..1824236 | 5..437 | 98 | | Minus |
BS08817.5prime Sequence
882 bp (875 high quality bases) assembled on 2006-01-18
> BS08817.5prime
GAAGTTATCAGTCGACATGAGCTCCATGGACTGCGCCACGTTCCCAATGC
ATCCTAAAATGGACGAGCAACTGGCCCGAACCTTCGTCATCAACGAGGAG
GAGGAGGAGAAGCACATTCAGAAGGTGCAGAACGCCTTCCTTTACTATGG
GCCATATGCGTGTCAGCGGCTAAAGCGCTCCATGGATTACCTGAACAGCC
TGTCTGGCGAGGACCAAATCATGCTAGCCAAGTACCGAGGGCATCTGGAG
TGCGTGCGCACGTGCATCGATCGCAACCAGGCGGTTATCCGGGAAATATT
GCGCGGGCGTGTCCTCTATCCGACGGATGAGGCGACTGGTGATCCCTCGG
AGTTTGACGAGCCGCCGCCAAATGTGCGGCACGGTGACATGGACCAGGCC
CAGTCGACGTTGAAGTTGATTGCGCGCGACTGGAGCACTGAAGGAGCCTT
AGAACGGGAGCAATCGTATAAACCGATCATCGACAGCATCGTTGCGTACT
TCAAGCACAGCGATTTCGAGCTGAAGGATATAAAGATCCTAGTGCCGGGA
GCGGGGTTGGGACGGCTCACCTACGAGCTTGCCTGCTTGGGGTACTCGTG
CGAGGGCAACGAGTTTTCCTACTTCATGCTGATCGCCTCCAATTTTGTCC
TCAACCTCTGCGACAACGAGAACAAGTACGTGTTATATCCGTGGGTGCAC
CAGTATGTGAATAACTTAAGGCGTGAGGATCAGGTGGCCCCCGTTCGTTT
CCCAGACGTCTGCCCGCTTAAAATCCACCCAAGGGCCATTTTGAAATAGC
AGCTGGCGACTTTCTGGAGGTCTACAAGACGCCGAACGCCTACNACTGCG
TGGCTACGTGCTTCTTCATCGATTGTGCCNAT
BS08817.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11596-PA | 1320 | CG11596-RA | 1..757 | 17..773 | 3785 | 100 | Plus |
CG11596-PC | 1371 | CG11596-RC | 1..381 | 17..397 | 1905 | 100 | Plus |
CG11596-PC | 1371 | CG11596-RC | 431..808 | 396..773 | 1890 | 100 | Plus |
CG11596-PB | 1206 | CG11596-RB | 266..643 | 396..773 | 1890 | 100 | Plus |
CG11596-PB | 1206 | CG11596-RB | 1..216 | 182..397 | 1080 | 100 | Plus |
CG11596-PC | 1371 | CG11596-RC | 806..915 | 770..879 | 531 | 99 | Plus |
CG11596-PA | 1320 | CG11596-RA | 755..864 | 770..879 | 531 | 99 | Plus |
CG11596-PB | 1206 | CG11596-RB | 641..750 | 770..879 | 531 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:31:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11596-RA | 1747 | CG11596-RA | 104..967 | 17..879 | 4284 | 99.8 | Plus |
CG11596-RE | 1765 | CG11596-RE | 508..992 | 396..879 | 2389 | 99.6 | Plus |
CG11596-RD | 1544 | CG11596-RD | 287..771 | 396..879 | 2389 | 99.6 | Plus |
CG11596-RE | 1765 | CG11596-RE | 104..458 | 17..397 | 1495 | 93.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1928333..1928581 | 150..398 | 1245 | 100 | Plus |
X | 23542271 | X | 1929454..1929676 | 658..879 | 1054 | 99.1 | Plus |
X | 23542271 | X | 1929244..1929384 | 517..657 | 705 | 100 | Plus |
X | 23542271 | X | 1927786..1927920 | 17..151 | 675 | 100 | Plus |
X | 23542271 | X | 1929050..1929170 | 396..516 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:31:35 has no hits.
BS08817.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:58 Download gff for
BS08817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-PA | 1..867 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:14 Download gff for
BS08817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-PA | 1..867 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:23:48 Download gff for
BS08817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 104..970 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:31:36 Download gff for
BS08817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 104..970 | 17..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:31:36 Download gff for
BS08817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1929052..1929170 | 398..516 | 100 | -> | Plus |
X | 1929244..1929384 | 517..657 | 100 | -> | Plus |
X | 1927786..1927919 | 17..150 | 100 | -> | Plus |
X | 1928334..1928580 | 151..397 | 100 | -> | Plus |
X | 1929454..1929679 | 658..882 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:23:48 Download gff for
BS08817.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1821819..1821952 | 17..150 | 100 | -> | Plus |
arm_X | 1822367..1822613 | 151..397 | 100 | -> | Plus |
arm_X | 1823085..1823203 | 398..516 | 100 | -> | Plus |
arm_X | 1823277..1823417 | 517..657 | 100 | -> | Plus |
arm_X | 1823487..1823712 | 658..882 | 98 | | Plus |
BS08817.complete Sequence
1352 bp (1352 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636276
> BS08817.complete
GAAGTTATCAGTCGACATGAGCTCCATGGACTGCGCCACGTTCCCAATGC
ATCCTAAAATGGACGAGCAACTGGCCCGAACCTTCGTCATCAACGAGGAG
GAGGAGGAGAAGCACATTCAGAAGGTGCAGAACGCCTTCCTTTACTATGG
GCCATATGCGTGTCAGCGGCTAAAGCGCTCCATGGATTACCTGAACAGCC
TGTCTGGCGAGGACCAAATCATGCTAGCCAAGTACCGAGGGCATCTGGAG
TGCGTGCGCACGTGCATCGATCGCAACCAGGCGGTTATCCGGGAAATATT
GCGCGGGCGTGTCCTCTATCCGACGGATGAGGCGACTGGTGATCCCTCGG
AGTTTGACGAGCCGCCGCCAAATGTGCGGCACGGTGACATGGACCAGGCC
CAGTCGACGTTGAAGTTGATTGCGCGCGACTGGAGCACTGAAGGAGCCTT
AGAACGGGAGCAATCGTATAAACCGATCATCGACAGCATCGTTGCGTACT
TCAAGCACAGCGATTTCGAGCTGAAGGATATAAAGATCCTAGTGCCGGGA
GCGGGGTTGGGACGGCTCACCTACGAGCTTGCCTGCTTGGGGTACTCGTG
CGAGGGCAACGAGTTTTCCTACTTCATGCTGATCGCCTCCAATTTTGTCC
TCAACCTCTGCGACAACGAGAACAAGTACGTGTTATATCCGTGGGTGCAC
CAGTATGTGAATAACTTAAGGCGTGAGGATCAGGTGGCCCCCGTTCGTTT
CCCAGACGTCTGCCCGCTTAAAAATCCACCCAAGGGCCATTTTGAAATAG
CAGCTGGCGACTTTCTGGAGGTCTACAAGACGCCGAACGCCTACAACTGC
GTGGCTACGTGCTTCTTCATCGATTGTGCCAATAATGTTATTGACTTCAT
ACGCACAATTTACAAAATCCTCGTGCCTGGTGGCATTTGGGTGAATCTCG
GGCCGCTGCTGTACCATTTTAGCGACGTCAGCGGGCAAAACAGCATCGAG
CCGGCTTTCGAGGACCTTTGCATTATCATGGAAAGCGTAGGATTCGTTAT
CGAGAAATCACGCACCGGCATCCGTACCAAGTACGCACAGAACCCGTCTT
CAATGAAACAGAGCGAGTACCAGAGTCTTTTCTGGGTCTGCCGCAAGCCG
GATCTATTTGAGGAGCAGCGGGGCAAACGCAAGGCCTCCAGGGAGCCACA
CGATCTTATTGTGCGCGAGGACAGCGAGGAGGAGGGGGAGCAACAGCCGG
AACGAAATGAAACGGAAGAAAAACAGCAACTGAAACCGCTGGCCACAGCC
AACTGCGAGACTGAGATAAAGGAGCAGCCATCGTGAAAGCTTTCTAGACC
AT
BS08817.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11596-RA | 1320 | CG11596-PA | 1..1320 | 17..1336 | 6600 | 100 | Plus |
CG11596-RE | 1206 | CG11596-PE | 266..1206 | 396..1336 | 4705 | 100 | Plus |
CG11596-RD | 1206 | CG11596-PD | 266..1206 | 396..1336 | 4705 | 100 | Plus |
CG11596-RE | 1206 | CG11596-PE | 1..216 | 182..397 | 1080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11596-RA | 1747 | CG11596-RA | 104..1427 | 17..1340 | 6605 | 99.9 | Plus |
CG11596-RE | 1765 | CG11596-RE | 508..1452 | 396..1340 | 4710 | 99.9 | Plus |
CG11596-RD | 1544 | CG11596-RD | 287..1231 | 396..1340 | 4710 | 99.9 | Plus |
CG11596-RE | 1765 | CG11596-RE | 211..458 | 150..397 | 1240 | 100 | Plus |
CG11596-RE | 1765 | CG11596-RE | 104..212 | 17..125 | 545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1929773..1930197 | 916..1340 | 2110 | 99.8 | Plus |
X | 23542271 | X | 1929454..1929711 | 658..915 | 1290 | 100 | Plus |
X | 23542271 | X | 1928333..1928581 | 150..398 | 1245 | 100 | Plus |
X | 23542271 | X | 1929244..1929384 | 517..657 | 705 | 100 | Plus |
X | 23542271 | X | 1927786..1927920 | 17..151 | 675 | 100 | Plus |
X | 23542271 | X | 1929050..1929170 | 396..516 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:48:38 has no hits.
BS08817.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:09 Download gff for
BS08817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 1..1320 | 17..1336 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:22 Download gff for
BS08817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 88..1417 | 17..1348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:25 Download gff for
BS08817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 104..1422 | 17..1335 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:09 Download gff for
BS08817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 88..1417 | 17..1348 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:29 Download gff for
BS08817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 104..1422 | 17..1335 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:29 Download gff for
BS08817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1928334..1928580 | 151..397 | 100 | -> | Plus |
X | 1929052..1929170 | 398..516 | 100 | -> | Plus |
X | 1929244..1929384 | 517..657 | 100 | -> | Plus |
X | 1929454..1929711 | 658..915 | 100 | -> | Plus |
X | 1929773..1930192 | 916..1335 | 100 | | Plus |
X | 1927786..1927919 | 17..150 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:25 Download gff for
BS08817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1821819..1821952 | 17..150 | 100 | -> | Plus |
arm_X | 1822367..1822613 | 151..397 | 100 | -> | Plus |
arm_X | 1823085..1823203 | 398..516 | 100 | -> | Plus |
arm_X | 1823277..1823417 | 517..657 | 100 | -> | Plus |
arm_X | 1823487..1823744 | 658..915 | 100 | -> | Plus |
arm_X | 1823806..1824225 | 916..1335 | 100 | | Plus |
BS08817.pep Sequence
Translation from 16 to 1335
> BS08817.pep
MSSMDCATFPMHPKMDEQLARTFVINEEEEEKHIQKVQNAFLYYGPYACQ
RLKRSMDYLNSLSGEDQIMLAKYRGHLECVRTCIDRNQAVIREILRGRVL
YPTDEATGDPSEFDEPPPNVRHGDMDQAQSTLKLIARDWSTEGALEREQS
YKPIIDSIVAYFKHSDFELKDIKILVPGAGLGRLTYELACLGYSCEGNEF
SYFMLIASNFVLNLCDNENKYVLYPWVHQYVNNLRREDQVAPVRFPDVCP
LKNPPKGHFEIAAGDFLEVYKTPNAYNCVATCFFIDCANNVIDFIRTIYK
ILVPGGIWVNLGPLLYHFSDVSGQNSIEPAFEDLCIIMESVGFVIEKSRT
GIRTKYAQNPSSMKQSEYQSLFWVCRKPDLFEEQRGKRKASREPHDLIVR
EDSEEEGEQQPERNETEEKQQLKPLATANCETEIKEQPS*
BS08817.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11596-PA | 439 | CG11596-PA | 1..439 | 1..439 | 2345 | 100 | Plus |
CG11596-PC | 456 | CG11596-PC | 1..456 | 1..439 | 2317 | 96.3 | Plus |
CG11596-PE | 401 | CG11596-PE | 1..401 | 56..439 | 2022 | 95.8 | Plus |
CG11596-PD | 401 | CG11596-PD | 1..401 | 56..439 | 2022 | 95.8 | Plus |
CG11596-PB | 401 | CG11596-PB | 1..401 | 56..439 | 2022 | 95.8 | Plus |