Clone BS08817 Report

Search the DGRC for BS08817

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG11596-RA
Protein status:BS08817.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08817.3prime Sequence

946 bp (792 high quality bases) assembled on 2006-01-18

> BS08817.3prime
ATGGTCTAGAAAGCTTTCACGATGGCTGCTCCTTTATCTCAGTCTCGCAG
TTGGCTGTGGCCAGCGGTTTCAGTTGCTGTTTTTCTTCCGTTTCATTTCG
TTCCGGCTGTTGCTCCCCCTCCTCCTCGCTGTCCTCGCGCACAATAAGAT
CGTGTGGCTCCCTGGAGGCCTTGCGTTTGCCCCGCTGCTCCTCAAATAGA
TCCGGCTTGCGGCAGACCCAGAAAAGACTCTGGTACTCGCTCTGTTTCAT
TGAAGACGGGTTCTGTGCGTACTTGGTACGGATGCCGGTGCGTGATTTCT
CGATAACGAATCCTACGCTTTCCATGATAATGCAAAGGTCCTCGAAAGCC
GGCTCGATGCTGTTTTGCCCGCTGACGTCGCTAAAATGGTACAGCAGCGG
CCCGAGATTCACCCAAATGCCACCAGGCACGAGGATTTTGTAAATTGTGC
GTATGAAGTCAATAACATTATTGGCACAATCGATGAAGAAGCACGTAGCC
ACGCAGTTGTAGGCGTTCGGCGTCTTGTAGACCTCCAGAAAGTCGCCAGC
TGCTATTTCAAAATGGCCCTTGGGTGGATTTTTAAGCGGGCAGACGTCTG
GGAAACGAACGGGGGCCACCTGATCCTCACGCCTTAAGTTATTCACATAC
TGGTGCACCCACGGATATAACACGTACTTGTTCTCGTTGTCGCAGAGGTT
GAGGACAAAATTGGAGGCGATCAGCATGAAGTAGGAAAACTCGTTGCCCT
CGCACGAGTACCCCAAGCAGGCAAGCTCGTAGGTGAGCCGTCCCAACCCC
GCTCCCGGCACTAGGATCTTTATATCCTTCAGCTCGAAATCGCTGTGCTT
GAAGTACGCAACGATGCTGTCGATGATCGGTTTATACGATTGCTCCCGTT
CTAAGGCTCCTTCAGTGCTCCAGTCGCGCGCAATCAACTTCAACGT

BS08817.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-PB 1206 CG11596-RB 277..1206 946..17 4650 100 Minus
CG11596-PC 1371 CG11596-RC 442..1371 946..17 4650 100 Minus
CG11596-PA 1320 CG11596-RA 391..1320 946..17 4650 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-RE 1765 CG11596-RE 519..1452 946..13 4655 99.9 Minus
CG11596-RD 1544 CG11596-RD 298..1231 946..13 4655 99.9 Minus
CG11596-RA 1747 CG11596-RA 494..1427 946..13 4655 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1929773..1930197 437..13 2110 99.8 Minus
X 23542271 X 1929454..1929711 695..438 1290 100 Minus
X 23542271 X 1929244..1929384 836..696 705 100 Minus
X 23542271 X 1929061..1929170 946..837 550 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:09:33 has no hits.

BS08817.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:57 Download gff for BS08817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-PA 391..1320 17..946 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:12 Download gff for BS08817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-PA 391..1320 17..946 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:32:31 Download gff for BS08817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 494..1433 5..946 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:27 Download gff for BS08817.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 494..1433 5..946 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:27 Download gff for BS08817.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1929454..1929711 438..695 100 -> Minus
X 1929773..1930203 5..437 98   Minus
X 1929061..1929170 837..946 100 -> Minus
X 1929244..1929384 696..836 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:32:31 Download gff for BS08817.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1823094..1823203 837..946 100 -> Minus
arm_X 1823277..1823417 696..836 100 -> Minus
arm_X 1823487..1823744 438..695 100 -> Minus
arm_X 1823806..1824236 5..437 98   Minus

BS08817.5prime Sequence

882 bp (875 high quality bases) assembled on 2006-01-18

> BS08817.5prime
GAAGTTATCAGTCGACATGAGCTCCATGGACTGCGCCACGTTCCCAATGC
ATCCTAAAATGGACGAGCAACTGGCCCGAACCTTCGTCATCAACGAGGAG
GAGGAGGAGAAGCACATTCAGAAGGTGCAGAACGCCTTCCTTTACTATGG
GCCATATGCGTGTCAGCGGCTAAAGCGCTCCATGGATTACCTGAACAGCC
TGTCTGGCGAGGACCAAATCATGCTAGCCAAGTACCGAGGGCATCTGGAG
TGCGTGCGCACGTGCATCGATCGCAACCAGGCGGTTATCCGGGAAATATT
GCGCGGGCGTGTCCTCTATCCGACGGATGAGGCGACTGGTGATCCCTCGG
AGTTTGACGAGCCGCCGCCAAATGTGCGGCACGGTGACATGGACCAGGCC
CAGTCGACGTTGAAGTTGATTGCGCGCGACTGGAGCACTGAAGGAGCCTT
AGAACGGGAGCAATCGTATAAACCGATCATCGACAGCATCGTTGCGTACT
TCAAGCACAGCGATTTCGAGCTGAAGGATATAAAGATCCTAGTGCCGGGA
GCGGGGTTGGGACGGCTCACCTACGAGCTTGCCTGCTTGGGGTACTCGTG
CGAGGGCAACGAGTTTTCCTACTTCATGCTGATCGCCTCCAATTTTGTCC
TCAACCTCTGCGACAACGAGAACAAGTACGTGTTATATCCGTGGGTGCAC
CAGTATGTGAATAACTTAAGGCGTGAGGATCAGGTGGCCCCCGTTCGTTT
CCCAGACGTCTGCCCGCTTAAAATCCACCCAAGGGCCATTTTGAAATAGC
AGCTGGCGACTTTCTGGAGGTCTACAAGACGCCGAACGCCTACNACTGCG
TGGCTACGTGCTTCTTCATCGATTGTGCCNAT

BS08817.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-PA 1320 CG11596-RA 1..757 17..773 3785 100 Plus
CG11596-PC 1371 CG11596-RC 1..381 17..397 1905 100 Plus
CG11596-PC 1371 CG11596-RC 431..808 396..773 1890 100 Plus
CG11596-PB 1206 CG11596-RB 266..643 396..773 1890 100 Plus
CG11596-PB 1206 CG11596-RB 1..216 182..397 1080 100 Plus
CG11596-PC 1371 CG11596-RC 806..915 770..879 531 99 Plus
CG11596-PA 1320 CG11596-RA 755..864 770..879 531 99 Plus
CG11596-PB 1206 CG11596-RB 641..750 770..879 531 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-RA 1747 CG11596-RA 104..967 17..879 4284 99.8 Plus
CG11596-RE 1765 CG11596-RE 508..992 396..879 2389 99.6 Plus
CG11596-RD 1544 CG11596-RD 287..771 396..879 2389 99.6 Plus
CG11596-RE 1765 CG11596-RE 104..458 17..397 1495 93.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1928333..1928581 150..398 1245 100 Plus
X 23542271 X 1929454..1929676 658..879 1054 99.1 Plus
X 23542271 X 1929244..1929384 517..657 705 100 Plus
X 23542271 X 1927786..1927920 17..151 675 100 Plus
X 23542271 X 1929050..1929170 396..516 605 100 Plus
Blast to na_te.dros performed on 2015-02-02 09:31:35 has no hits.

BS08817.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:58 Download gff for BS08817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-PA 1..867 17..882 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:14 Download gff for BS08817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-PA 1..867 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:23:48 Download gff for BS08817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 104..970 17..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:31:36 Download gff for BS08817.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 104..970 17..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:31:36 Download gff for BS08817.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1929052..1929170 398..516 100 -> Plus
X 1929244..1929384 517..657 100 -> Plus
X 1927786..1927919 17..150 100 -> Plus
X 1928334..1928580 151..397 100 -> Plus
X 1929454..1929679 658..882 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:23:48 Download gff for BS08817.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1821819..1821952 17..150 100 -> Plus
arm_X 1822367..1822613 151..397 100 -> Plus
arm_X 1823085..1823203 398..516 100 -> Plus
arm_X 1823277..1823417 517..657 100 -> Plus
arm_X 1823487..1823712 658..882 98   Plus

BS08817.complete Sequence

1352 bp (1352 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636276

> BS08817.complete
GAAGTTATCAGTCGACATGAGCTCCATGGACTGCGCCACGTTCCCAATGC
ATCCTAAAATGGACGAGCAACTGGCCCGAACCTTCGTCATCAACGAGGAG
GAGGAGGAGAAGCACATTCAGAAGGTGCAGAACGCCTTCCTTTACTATGG
GCCATATGCGTGTCAGCGGCTAAAGCGCTCCATGGATTACCTGAACAGCC
TGTCTGGCGAGGACCAAATCATGCTAGCCAAGTACCGAGGGCATCTGGAG
TGCGTGCGCACGTGCATCGATCGCAACCAGGCGGTTATCCGGGAAATATT
GCGCGGGCGTGTCCTCTATCCGACGGATGAGGCGACTGGTGATCCCTCGG
AGTTTGACGAGCCGCCGCCAAATGTGCGGCACGGTGACATGGACCAGGCC
CAGTCGACGTTGAAGTTGATTGCGCGCGACTGGAGCACTGAAGGAGCCTT
AGAACGGGAGCAATCGTATAAACCGATCATCGACAGCATCGTTGCGTACT
TCAAGCACAGCGATTTCGAGCTGAAGGATATAAAGATCCTAGTGCCGGGA
GCGGGGTTGGGACGGCTCACCTACGAGCTTGCCTGCTTGGGGTACTCGTG
CGAGGGCAACGAGTTTTCCTACTTCATGCTGATCGCCTCCAATTTTGTCC
TCAACCTCTGCGACAACGAGAACAAGTACGTGTTATATCCGTGGGTGCAC
CAGTATGTGAATAACTTAAGGCGTGAGGATCAGGTGGCCCCCGTTCGTTT
CCCAGACGTCTGCCCGCTTAAAAATCCACCCAAGGGCCATTTTGAAATAG
CAGCTGGCGACTTTCTGGAGGTCTACAAGACGCCGAACGCCTACAACTGC
GTGGCTACGTGCTTCTTCATCGATTGTGCCAATAATGTTATTGACTTCAT
ACGCACAATTTACAAAATCCTCGTGCCTGGTGGCATTTGGGTGAATCTCG
GGCCGCTGCTGTACCATTTTAGCGACGTCAGCGGGCAAAACAGCATCGAG
CCGGCTTTCGAGGACCTTTGCATTATCATGGAAAGCGTAGGATTCGTTAT
CGAGAAATCACGCACCGGCATCCGTACCAAGTACGCACAGAACCCGTCTT
CAATGAAACAGAGCGAGTACCAGAGTCTTTTCTGGGTCTGCCGCAAGCCG
GATCTATTTGAGGAGCAGCGGGGCAAACGCAAGGCCTCCAGGGAGCCACA
CGATCTTATTGTGCGCGAGGACAGCGAGGAGGAGGGGGAGCAACAGCCGG
AACGAAATGAAACGGAAGAAAAACAGCAACTGAAACCGCTGGCCACAGCC
AACTGCGAGACTGAGATAAAGGAGCAGCCATCGTGAAAGCTTTCTAGACC
AT

BS08817.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-RA 1320 CG11596-PA 1..1320 17..1336 6600 100 Plus
CG11596-RE 1206 CG11596-PE 266..1206 396..1336 4705 100 Plus
CG11596-RD 1206 CG11596-PD 266..1206 396..1336 4705 100 Plus
CG11596-RE 1206 CG11596-PE 1..216 182..397 1080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-RA 1747 CG11596-RA 104..1427 17..1340 6605 99.9 Plus
CG11596-RE 1765 CG11596-RE 508..1452 396..1340 4710 99.9 Plus
CG11596-RD 1544 CG11596-RD 287..1231 396..1340 4710 99.9 Plus
CG11596-RE 1765 CG11596-RE 211..458 150..397 1240 100 Plus
CG11596-RE 1765 CG11596-RE 104..212 17..125 545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1929773..1930197 916..1340 2110 99.8 Plus
X 23542271 X 1929454..1929711 658..915 1290 100 Plus
X 23542271 X 1928333..1928581 150..398 1245 100 Plus
X 23542271 X 1929244..1929384 517..657 705 100 Plus
X 23542271 X 1927786..1927920 17..151 675 100 Plus
X 23542271 X 1929050..1929170 396..516 605 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:48:38 has no hits.

BS08817.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:09 Download gff for BS08817.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 1..1320 17..1336 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:22 Download gff for BS08817.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 88..1417 17..1348 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:25 Download gff for BS08817.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 104..1422 17..1335 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:09 Download gff for BS08817.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 88..1417 17..1348 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:29 Download gff for BS08817.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 104..1422 17..1335 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:29 Download gff for BS08817.complete
Subject Subject Range Query Range Percent Splice Strand
X 1928334..1928580 151..397 100 -> Plus
X 1929052..1929170 398..516 100 -> Plus
X 1929244..1929384 517..657 100 -> Plus
X 1929454..1929711 658..915 100 -> Plus
X 1929773..1930192 916..1335 100   Plus
X 1927786..1927919 17..150 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:25 Download gff for BS08817.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1821819..1821952 17..150 100 -> Plus
arm_X 1822367..1822613 151..397 100 -> Plus
arm_X 1823085..1823203 398..516 100 -> Plus
arm_X 1823277..1823417 517..657 100 -> Plus
arm_X 1823487..1823744 658..915 100 -> Plus
arm_X 1823806..1824225 916..1335 100   Plus

BS08817.pep Sequence

Translation from 16 to 1335

> BS08817.pep
MSSMDCATFPMHPKMDEQLARTFVINEEEEEKHIQKVQNAFLYYGPYACQ
RLKRSMDYLNSLSGEDQIMLAKYRGHLECVRTCIDRNQAVIREILRGRVL
YPTDEATGDPSEFDEPPPNVRHGDMDQAQSTLKLIARDWSTEGALEREQS
YKPIIDSIVAYFKHSDFELKDIKILVPGAGLGRLTYELACLGYSCEGNEF
SYFMLIASNFVLNLCDNENKYVLYPWVHQYVNNLRREDQVAPVRFPDVCP
LKNPPKGHFEIAAGDFLEVYKTPNAYNCVATCFFIDCANNVIDFIRTIYK
ILVPGGIWVNLGPLLYHFSDVSGQNSIEPAFEDLCIIMESVGFVIEKSRT
GIRTKYAQNPSSMKQSEYQSLFWVCRKPDLFEEQRGKRKASREPHDLIVR
EDSEEEGEQQPERNETEEKQQLKPLATANCETEIKEQPS*

BS08817.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-PA 439 CG11596-PA 1..439 1..439 2345 100 Plus
CG11596-PC 456 CG11596-PC 1..456 1..439 2317 96.3 Plus
CG11596-PE 401 CG11596-PE 1..401 56..439 2022 95.8 Plus
CG11596-PD 401 CG11596-PD 1..401 56..439 2022 95.8 Plus
CG11596-PB 401 CG11596-PB 1..401 56..439 2022 95.8 Plus