Clone Sequence Records
BS08818.3prime Sequence
935 bp (853 high quality bases) assembled on 2006-01-18
> BS08818.3prime
ATGGTCTAGAAAGCTTCTACGCATTGTGATGCGGTGGGATGACCACCCAG
CCTTCTTCCACGGACTCAGAGCCTCCGCACACCGATCCGGGCAGCAGTCC
ACAGCCCTCATCCTGCAGGAAATGCATAGGCGGATGTGAGTGTGGATGCT
GAAGCTGATTTGGATGCGGATGAGGATGAGGTTGCGGATGATGGCCGGCC
GCAAGTTGGCGTGAAGCGTACTGCTGCTGCAGATTGTTGTAAAGACTCTG
AAGACCCTCCTTGTCCTTCATCTTGCGCAGAAGCTCCTGCTTCTGTTCGC
GCTCGGTTCGGTCCATCTGCACGATGAGCTTGTCCTTGAAGTCCTGCGCG
TAGTAGAGGTTCGTGTCGACGCTCAGGTACTCCTTGGCCATGTGTCGGTG
GTCCCGGTAGATGAGCTGCGATTCGGCATCGTTGGGTATCGGCGGCTCTG
GCTGGAGCTCCGGATCAAGAATCTCGGCCAGTGACTGTTCGGTGCCGTCG
TTCTCATCCTCGTCGGGATCCACGTCGACGTCCAACGAGTTGACAATCTC
CTGCTCATGCTCTTGCTCCTGCAGCTCCTCATCTCTTGCTTGCCAACCAT
TCGCATGGCTCAGCAGTCCGTTCGAGTGGGCGTGGATGCCGCCGTTGTTG
TTGGACAGATCCGTGGTCATCATCACCGGCTTGGTGTCCGTCACCGTGAG
TCGTTCGCGGCCATCGCTCTTTGCGTTCGTGCTGCTGCTGCTGCTTTCGC
TGGGACTCAGATCAAAGCCATTCGCCTCCACGTCGAGGGTGAGCTGCTCC
ATGGGCTTGCAGGCCATCAGGATCATGCCGTTCCGGATCGTTTCGAGGCG
CTGAGTGGCCTCAGCCGACGAGGTGAGGTTGAAGCTATCGTTCCGGCTCT
CGTTGCTCTCCTCCTCGGGAATCGCGTCCCAGCGA
BS08818.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18492-PA | 2037 | Tak1-RA | 1119..2037 | 935..17 | 4595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tak1-RA | 3391 | CG18492-RA | 2080..2998 | 935..17 | 4595 | 100 | Minus |
| Tak1-RB | 1650 | CG18492-RB | 551..1257 | 723..17 | 3535 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20516658..20517123 | 259..724 | 2330 | 100 | Plus |
| X | 23542271 | X | 20516301..20516545 | 17..261 | 1225 | 100 | Plus |
| X | 23542271 | X | 20521628..20521790 | 773..935 | 815 | 100 | Plus |
| X | 23542271 | X | 20521224..20521273 | 724..773 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:28:00 has no hits.
BS08818.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:50:59 Download gff for
BS08818.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-PA | 1120..2037 | 17..934 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:15 Download gff for
BS08818.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18492-PA | 1120..2037 | 17..934 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:06:47 Download gff for
BS08818.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 2081..3001 | 12..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:42 Download gff for
BS08818.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 2081..3001 | 12..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:42 Download gff for
BS08818.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20516298..20516543 | 12..259 | 98 | <- | Plus |
| X | 20516659..20517122 | 260..723 | 100 | <- | Plus |
| X | 20521224..20521272 | 724..772 | 100 | <- | Plus |
| X | 20521628..20521789 | 773..934 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:06:47 Download gff for
BS08818.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20387325..20387570 | 12..259 | 98 | <- | Plus |
| arm_X | 20387686..20388149 | 260..723 | 100 | <- | Plus |
| arm_X | 20392251..20392299 | 724..772 | 100 | <- | Plus |
| arm_X | 20392655..20392816 | 773..934 | 100 | | Plus |
BS08818.5prime Sequence
939 bp (763 high quality bases) assembled on 2006-01-18
> BS08818.5prime
GAAGTTATCAGTCGACATGGCCACAGCATCGCTGGACGCACTGCAGGCAG
CCTATGTGGACTTCAGTGAGATAACACTAAGAGAGAAAGTCGGCCATGGG
TCCTACGGAGTGGTCTGCAAGGCCGTTTGGCGCGACAAGCTGGTTGCCGT
CAAGGAGTTCTTCGCCAGCGCCGAGCAGAAGGACATCGAGAAGGAGGTGA
AGCAGTTGTCGCGCGTGAAGCACCCGAACATCATCGCTCTGCACGGGATA
TCCTCGTACCAGCAGGCCACCTACCTGATAATGGAGTTCGCCGAAGGTGG
ATCGCTGCACAACTTCCTTCACGGCAAGGTGAAGCCGGCATATTCTCTGG
CCCACGCCATGAGCTGGGCGCGCCAATGTGCAGAGGGTCTGGCATATTTG
CATGCCATGACGCCAAAACCACTAATACATCGCGACGTGAAGCCGCTGAA
CCTGCTCTTGACCAACAAGGGACGCAATCTGAAGATATGCGACTTCGGCA
CGGTGGCGGACAAGTCGACCATGATGACCAACAATCGCGGCAGTGCCGCT
TGGATGGCGCCCGAGGTCTTCGAAGGCTCCAAGTATACGGAGAAGTGTGA
CATTTTTAGCTGGGCCATTGTTCTATGGGAGGTTCTGTCCAGGAAGCAGC
CCTTTAAAGGCATCGACAATGCCTACACCATCCAGTGGAAGATCTACAAG
GGTGAACGCCCGCCGCTGCTGACCACTTGCCCCAAGCGCATCGAGGACCT
GATGACCGCCTGCTGGAAAACGGTGCCCGAGGATCGCCCGTCGATGCAGT
ACATAGTGGGCGTTATGCACGAGATCGTCAAGGACTATACGGGGGCGGAC
AAGGCCCTGGAATACACGTTTGTTAATCAACAGATTGTCACCAAAGAGAG
CGACGGCACGGTGGCCCGCTCACCGGATAGCCTCAGTTC
BS08818.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18492-PA | 2037 | Tak1-RA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tak1-RA | 3391 | CG18492-RA | 962..1884 | 17..939 | 4570 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20522502..20522822 | 704..384 | 1605 | 100 | Minus |
| X | 23542271 | X | 20523058..20523360 | 386..84 | 1515 | 100 | Minus |
| X | 23542271 | X | 20522264..20522446 | 883..701 | 915 | 100 | Minus |
| X | 23542271 | X | 20523899..20523967 | 85..17 | 345 | 100 | Minus |
| X | 23542271 | X | 20521986..20522044 | 939..881 | 220 | 91.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:32:00 has no hits.
BS08818.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:00 Download gff for
BS08818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-PA | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:17 Download gff for
BS08818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18492-PA | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:14:59 Download gff for
BS08818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 959..1884 | 14..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:40 Download gff for
BS08818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 959..1884 | 14..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:40 Download gff for
BS08818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20523059..20523358 | 86..385 | 100 | <- | Minus |
| X | 20523899..20523970 | 14..85 | 98 | | Minus |
| X | 20521986..20522041 | 884..939 | 96 | <- | Minus |
| X | 20522264..20522445 | 702..883 | 100 | <- | Minus |
| X | 20522505..20522820 | 386..701 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:14:59 Download gff for
BS08818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20393013..20393068 | 884..939 | 96 | <- | Minus |
| arm_X | 20393291..20393472 | 702..883 | 100 | <- | Minus |
| arm_X | 20393532..20393847 | 386..701 | 100 | <- | Minus |
| arm_X | 20394086..20394385 | 86..385 | 100 | <- | Minus |
| arm_X | 20394926..20394997 | 14..85 | 98 | | Minus |
BS08818.complete Sequence
2069 bp assembled on 2008-01-16
GenBank Submission: FJ636277
> BS08818.complete
GAAGTTATCAGTCGACATGGCCACAGCATCGCTGGACGCACTGCAGGCAG
CCTATGTGGACTTCAGTGAGATAACACTAAGAGAGAAAGTCGGCCATGGG
TCCTACGGAGTGGTCTGCAAGGCCGTTTGGCGCGACAAGCTGGTTGCCGT
CAAGGAGTTCTTCGCCAGCGCCGAGCAGAAGGACATCGAGAAGGAGGTGA
AGCAGTTGTCGCGCGTGAAGCACCCGAACATCATCGCTCTGCACGGGATA
TCCTCGTACCAGCAGGCCACCTACCTGATAATGGAGTTCGCCGAAGGTGG
ATCGCTGCACAACTTCCTTCACGGCAAGGTGAAGCCGGCATATTCTCTGG
CCCACGCCATGAGCTGGGCGCGCCAATGTGCAGAGGGTCTGGCATATTTG
CATGCCATGACGCCAAAACCACTAATACATCGCGACGTGAAGCCGCTGAA
CCTGCTCTTGACCAACAAGGGACGCAATCTGAAGATATGCGACTTCGGCA
CGGTGGCGGACAAGTCGACCATGATGACCAACAATCGCGGCAGTGCCGCT
TGGATGGCGCCCGAGGTCTTCGAAGGCTCCAAGTATACGGAGAAGTGTGA
CATTTTTAGCTGGGCCATTGTTCTATGGGAGGTTCTGTCCAGGAAGCAGC
CCTTTAAAGGCATCGACAATGCCTACACCATCCAGTGGAAGATCTACAAG
GGTGAACGCCCGCCGCTGCTGACCACTTGCCCCAAGCGCATCGAGGACCT
GATGACCGCCTGCTGGAAAACGGTGCCCGAGGATCGCCCGTCGATGCAGT
ACATAGTGGGCGTTATGCACGAGATCGTCAAGGACTATACGGGGGCGGAC
AAGGCCCTGGAATACACGTTTGTTAATCAACAGATTGTCACCAAAGAGAG
CGACGGCACGGTGGCCGCTCAACCGGATAGCCTCAGTTCGCAGGAGGGGG
AACTGAGCCCCTCGTCCACACAGTTAACACCGACAACGGCGGCCAACGCC
AATGTGAACGCGATAGCAATATCAAAAACAACGACTAGCTCAATGACCGA
AAATACCTCATCAACATCATCGGACATCACGCCGACGAACTCGGGCCAAC
TGGACAATAATCCGCTATTCTATATGGTCACCAATCGCTGGGACGCGATT
CCCGAGGAGGAGAGCAACGAGAGCCGGAACGATAGCTTCAACCTCACCTC
GTCGGCTGAGGCCACTCAGCGCCTCGAAACGATCCGGAACGGCATGATCC
TGATGGCCTGCAAGCCCATGGAGCAGCTCACCCTCGACGTGGAGGCGAAT
GGCTTTGATCTGAGTCCCAGCGAAAGCAGCAGCAGCAGCACGAACGCAAA
GAGCGATGGCCGCGAACGACTCACGGTGACGGACACCAAGCCGGTGATGA
TGACCACGGATCTGTCCAACAACAACGGCGGCATCCACGCCCACTCGAAC
GGACTGCTGAGCCATGCGAATGGTTGGCAAGCAAGAGATGAGGAGCTGCA
GGAGCAAGAGCATGAGCAGGAGATTGTCAACTCGTTGGACGTCGACGTGG
ATCCCGACGAGGATGAGAACGACGGCACCGAACAGTCACTGGCCGAGATT
CTTGATCCGGAGCTCCAGCCAGAGCCGCCGATACCCAACGATGCCGAATC
GCAGCTCATCTACCGGGACCACCGACACATGGCCAAGGAGTACCTGAGCG
TCGACACGAACCTCTACTACGCGCAGGACTTCAAGGACAAGCTCATCGTG
CAGATGGACCGAACCGAGCGCGAACAGAAGCAGGAGCTTCTGCGCAAGAT
GAAGGACAAGGAGGGTCTTCAGAGTCTTTACAACAATCTGCAGCAGCAGT
ACGCTTCACGCCAACTTGCGGCCGGCCATCATCCGCAACCTCATCCTCAT
CCGCATCCAAATCAGCTTCAGCATCCACACTCACATCCGCCTATGCATTT
CCTGCAGGATGAGGGCTGTGGACTGCTGCCCGGATCGGTGTGCGGAGGCT
CTGAGTCCGTGGAAGAAGGCTGGGTGGTCATCCCACCGCATCACAATGCG
TAGAAGCTTTCTAGACCAT
BS08818.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tak1-RA | 2037 | CG18492-PA | 1..2037 | 17..2053 | 10185 | 100 | Plus |
| Tak1-RB | 777 | CG18492-PB | 71..777 | 1347..2053 | 3535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tak1-RA | 3391 | CG18492-RA | 962..2998 | 17..2053 | 10185 | 100 | Plus |
| Tak1-RB | 1650 | CG18492-RB | 551..1257 | 1347..2053 | 3535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20516658..20517123 | 1811..1346 | 2330 | 100 | Minus |
| X | 23542271 | X | 20521628..20522044 | 1297..881 | 2085 | 100 | Minus |
| X | 23542271 | X | 20522502..20522822 | 704..384 | 1605 | 100 | Minus |
| X | 23542271 | X | 20523058..20523360 | 386..84 | 1515 | 100 | Minus |
| X | 23542271 | X | 20516301..20516545 | 2053..1809 | 1225 | 100 | Minus |
| X | 23542271 | X | 20522264..20522446 | 883..701 | 915 | 100 | Minus |
| X | 23542271 | X | 20523899..20523967 | 85..17 | 345 | 100 | Minus |
| X | 23542271 | X | 20521224..20521273 | 1346..1297 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:02:35 has no hits.
BS08818.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:46 Download gff for
BS08818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 1..2037 | 17..2053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:34:43 Download gff for
BS08818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 960..2996 | 17..2053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:28 Download gff for
BS08818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 962..2998 | 17..2053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:47 Download gff for
BS08818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 957..2999 | 14..2058 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:30 Download gff for
BS08818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tak1-RA | 962..2998 | 17..2053 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:30 Download gff for
BS08818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20523059..20523358 | 86..385 | 100 | <- | Minus |
| X | 20523899..20523967 | 17..85 | 100 | | Minus |
| X | 20516301..20516543 | 1811..2053 | 100 | <- | Minus |
| X | 20516659..20517122 | 1347..1810 | 100 | <- | Minus |
| X | 20521224..20521272 | 1298..1346 | 100 | <- | Minus |
| X | 20521628..20522041 | 884..1297 | 100 | <- | Minus |
| X | 20522264..20522445 | 702..883 | 100 | <- | Minus |
| X | 20522505..20522820 | 386..701 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:28 Download gff for
BS08818.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20392251..20392299 | 1298..1346 | 100 | <- | Minus |
| arm_X | 20387328..20387570 | 1811..2053 | 100 | <- | Minus |
| arm_X | 20387686..20388149 | 1347..1810 | 100 | <- | Minus |
| arm_X | 20392655..20393068 | 884..1297 | 100 | <- | Minus |
| arm_X | 20393291..20393472 | 702..883 | 100 | <- | Minus |
| arm_X | 20393532..20393847 | 386..701 | 100 | <- | Minus |
| arm_X | 20394086..20394385 | 86..385 | 100 | <- | Minus |
| arm_X | 20394926..20394994 | 17..85 | 100 | | Minus |
BS08818.pep Sequence
Translation from 16 to 2052
> BS08818.pep
MATASLDALQAAYVDFSEITLREKVGHGSYGVVCKAVWRDKLVAVKEFFA
SAEQKDIEKEVKQLSRVKHPNIIALHGISSYQQATYLIMEFAEGGSLHNF
LHGKVKPAYSLAHAMSWARQCAEGLAYLHAMTPKPLIHRDVKPLNLLLTN
KGRNLKICDFGTVADKSTMMTNNRGSAAWMAPEVFEGSKYTEKCDIFSWA
IVLWEVLSRKQPFKGIDNAYTIQWKIYKGERPPLLTTCPKRIEDLMTACW
KTVPEDRPSMQYIVGVMHEIVKDYTGADKALEYTFVNQQIVTKESDGTVA
AQPDSLSSQEGELSPSSTQLTPTTAANANVNAIAISKTTTSSMTENTSST
SSDITPTNSGQLDNNPLFYMVTNRWDAIPEEESNESRNDSFNLTSSAEAT
QRLETIRNGMILMACKPMEQLTLDVEANGFDLSPSESSSSSTNAKSDGRE
RLTVTDTKPVMMTTDLSNNNGGIHAHSNGLLSHANGWQARDEELQEQEHE
QEIVNSLDVDVDPDEDENDGTEQSLAEILDPELQPEPPIPNDAESQLIYR
DHRHMAKEYLSVDTNLYYAQDFKDKLIVQMDRTEREQKQELLRKMKDKEG
LQSLYNNLQQQYASRQLAAGHHPQPHPHPHPNQLQHPHSHPPMHFLQDEG
CGLLPGSVCGGSESVEEGWVVIPPHHNA*
BS08818.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tak1-PA | 678 | CG18492-PA | 1..678 | 1..678 | 3571 | 100 | Plus |
| Tak1-PB | 258 | CG18492-PB | 25..258 | 445..678 | 1271 | 100 | Plus |
| Takl2-PB | 281 | CG4803-PB | 8..270 | 14..273 | 644 | 47.1 | Plus |
| Takl1-PA | 393 | CG31421-PA | 5..277 | 14..278 | 544 | 41.6 | Plus |
| slpr-PD | 1148 | CG2272-PD | 113..389 | 3..270 | 365 | 30.5 | Plus |
