Clone Sequence Records
BS08819.3prime Sequence
952 bp (819 high quality bases) assembled on 2006-01-18
> BS08819.3prime
ATGGTCTAGAAAGCTTCTAATGAAGTTCGTCTCCGGATGTGACCTCCACT
ACCGATCGCACCTCTCCGGACAAACGACTCTGCAGATTCTTGTTGATATT
GTCCACCATGTCGAAGGCATCTATGATCATTTGGGCCTCGCCCTGCGCCT
TTTCGCTCATCTGTTCCAGACTTTTTCGCAACTCCCTGTGCTCTCCAGTA
GTGTCCCGCTGCTCCGCCTTCTGATACAAGCTGGTTCGCGAGAAGAGGGC
GGTGGACGTCATGTGATCGGGGTGCTTCTCCAGTTCTTCGGGCAGTGGAA
AGTCAATATCAAAAGAGAATCGTTGCAACTCCTCATACTTCGCGTCCTGG
ACCTCTTTGTCCTGGCCATAGCTGATGACCACCGCCTGGAGGACGATGTC
GCTACCAGGAAGTTGCATGTAGGCAATAACGTCCTTAAAGAGATTCTCTT
TCCTCCACACGGTTTGTCTGTACTGCACCACCTGGTATACCACCATCTCC
GGTTCGGGACTGTATTGCACCAGCATCCAAGTGTCATCATTCATGGCCTC
CGGTTCAGCTTCCAAATTATCATCGAAGGCGAGATCAAAGCTTCGCGCTT
TCAGGTGCAGTAGTATCTTTTCCATATAATCACGACTTTCGTAGGCATAT
AGGATGTGGGCAATGCAGCCGGGAGCCAACCTCACCAGAGGATTACCCTT
CAGCTCGGGCTTGGTGCTCAGCAGCATTACATTGTTTGGAGAAACAAGTT
TCTGGATGAGGCGCTCGCCCGCCTTTTCATTCTCGGTGTACTGGACCAAC
AGTTGCTGGCCGCCGGCATCTTCCCTCTCCTCCTTGCTCATGGACAGCAA
TGCTGCATCCACCAGGCGCCTCTCATCCGCTGCCAGTATGAGTTTCGCCT
CCAGCACCATTCCATTGACCCGGAATCTACGAATCGGGTCATGTATTTGT
CT
BS08819.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15634-PA | 1140 | CG15634-RA | 231..1140 | 926..17 | 4550 | 100 | Minus |
| CG15634-PA | 1140 | CG15634-RA | 204..230 | 952..926 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elba3-RA | 1446 | CG15634-RA | 342..1278 | 952..17 | 4660 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:50:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4687852..4688788 | 952..17 | 4635 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 08:50:47 has no hits.
BS08819.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:01 Download gff for
BS08819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15634-PA | 204..1140 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:18 Download gff for
BS08819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15634-PA | 204..1140 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:04 Download gff for
BS08819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elba3-RA | 342..1278 | 17..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:56:21 Download gff for
BS08819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elba3-RA | 342..1278 | 17..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:56:21 Download gff for
BS08819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4687852..4688788 | 17..952 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:04 Download gff for
BS08819.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4687852..4688788 | 17..952 | 99 | | Minus |
BS08819.5prime Sequence
1012 bp (783 high quality bases) assembled on 2006-01-18
> BS08819.5prime
GAAGTTATCAGTCGACATGAGCAACATCAGCAACGACAGTGGATTGGATG
ACTCCGCGAACAGTGGAGCCGTTGTCAGCGCCAATGGACCATTGGCAGCG
ACTCGGTTATCCTGGTTCCTGGCCGAAGTCGATGACGGCTTGATGAAGGA
TGGGAAGCCAAATGGTCGACGCCGTCTCTGCGTTCTCCATTCGATGGAAC
TCCTAGAGTCAGATGTTTCAGACAAATACATGACCCGATTCGTAGAATTC
CGGGTCAATGGAATGGTGCTGGAGGCGAAACTCATACTGGCAGCGGATGA
GAGGCGCCTGGTGGATGCAGCATTGCTGTCCATGAGCAAGGAGGAGAGGG
AAGATGCCGGCGGCCAGCAACTGTTGGTCCAGTACACCGAGAATGAAAAG
GCGGGCGAGCGCCTCATCCAGAAACTTGTTTCTCCAAACAATGTAATGCT
GCTGAGCACCAAGCCCGAGCTGAAGGGTAATCCTCTGGTGAGGTTGGCTC
CCGGCTGCATTGCCCACATCCTATATGCCTACGAAAGTCGTGATTATATG
GAAAAGATACTACTGCACCTGAAAGCGCGAAGCTTTGATCTCGCCTTCGA
TGATAATTTGGAAGCTGAACCGGAGGCCATGAATGATGACACTTGGATGC
TGGTGCAATACAGTCCCGAACCGGAGATGGTGGTATACCAGGTGGTGCAG
TACAGACAAACCGTGTGGAGGAAAGAGAATCTCTTTAAGGACGTTATTGC
CTACATGCAACTTCCTGGTAGCGACATCGTCCTCCAGGCGGTGGTCATCA
GCTATGGCCAGGACAAAGAGGTCCAGGACGCGAAGTATGAGGAGTTGCAA
CGATTCTCTTTTGATATTGACTTTCCACTGCCCGAAGAACTGGAGAAGCA
CCCCGATCACATGACGTCCACCGCCCTCTTCTCGCGAACCAGCTTGTATC
AGAAAGCGGAGCAGCGGGGACACTACTGGAAAGCACAGGGAGTTGCGAAA
AAGTCTGGAACA
BS08819.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15634-PA | 1140 | CG15634-RA | 1..952 | 17..968 | 4735 | 99.8 | Plus |
| CG15634-PA | 1140 | CG15634-RA | 950..995 | 967..1012 | 205 | 97.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elba3-RA | 1446 | CG15634-RA | 138..1133 | 16..1012 | 4930 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4687648..4688643 | 16..1012 | 4905 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:29:46 has no hits.
BS08819.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:02 Download gff for
BS08819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15634-PA | 1..994 | 17..1011 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:19 Download gff for
BS08819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15634-PA | 1..994 | 17..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:08 Download gff for
BS08819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elba3-RA | 129..1132 | 7..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:08:42 Download gff for
BS08819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elba3-RA | 129..1132 | 7..1011 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:08:42 Download gff for
BS08819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4687639..4688642 | 7..1011 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:08 Download gff for
BS08819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4687639..4688642 | 7..1011 | 99 | | Plus |
BS08819.complete Sequence
1172 bp (1172 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636278
> BS08819.complete
GAAGTTATCAGTCGACATGAGCAACATCAGCAACGACAGTGGATTGGATG
ACTCCGCGAACAGTGGAGCCGTTGTCAGCGCCAATGGACCATTGGCAGCG
ACTCGGTTATCCTGGTTCCTGGCCGAAGTCGATGACGGCTTGATGAAGGA
TGGGAAGCCAAATGGTCGACGCCGTCTCTGCGTTCTCCATTCGATGGAAC
TCCTAGAGTCAGATGTTTCAGACAAATACATGACCCGATTCGTAGAATTC
CGGGTCAATGGAATGGTGCTGGAGGCGAAACTCATACTGGCAGCGGATGA
GAGGCGCCTGGTGGATGCAGCATTGCTGTCCATGAGCAAGGAGGAGAGGG
AAGATGCCGGCGGCCAGCAACTGTTGGTCCAGTACACCGAGAATGAAAAG
GCGGGCGAGCGCCTCATCCAGAAACTTGTTTCTCCAAACAATGTAATGCT
GCTGAGCACCAAGCCCGAGCTGAAGGGTAATCCTCTGGTGAGGTTGGCTC
CCGGCTGCATTGCCCACATCCTATATGCCTACGAAAGTCGTGATTATATG
GAAAAGATACTACTGCACCTGAAAGCGCGAAGCTTTGATCTCGCCTTCGA
TGATAATTTGGAAGCTGAACCGGAGGCCATGAATGATGACACTTGGATGC
TGGTGCAATACAGTCCCGAACCGGAGATGGTGGTATACCAGGTGGTGCAG
TACAGACAAACCGTGTGGAGGAAAGAGAATCTCTTTAAGGACGTTATTGC
CTACATGCAACTTCCTGGTAGCGACATCGTCCTCCAGGCGGTGGTCATCA
GCTATGGCCAGGACAAAGAGGTCCAGGACGCGAAGTATGAGGAGTTGCAA
CGATTCTCTTTTGATATTGACTTTCCACTGCCCGAAGAACTGGAGAAGCA
CCCCGATCACATGACGTCCACCGCCCTCTTCTCGCGAACCAGCTTGTATC
AGAAGGCGGAGCAGCGGGACACTACTGGAGAGCACAGGGAGTTGCGAAAA
AGTCTGGAACAGATGAGCGAAAAGGCGCAGGGCGAGGCCCAAATGATCAT
AGATGCCTTCGACATGGTGGACAATATCAACAAGAATCTGCAGAGTCGTT
TGTCCGGAGAGGTGCGATCGGTAGTGGAGGTCACATCCGGAGACGAACTT
CATTAGAAGCTTTCTAGACCAT
BS08819.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:59:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elba3-RA | 1140 | CG15634-PA | 1..1140 | 17..1156 | 5700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elba3-RA | 1446 | CG15634-RA | 138..1278 | 16..1156 | 5705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4687648..4688788 | 16..1156 | 5705 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:59:35 has no hits.
BS08819.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:12 Download gff for
BS08819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15634-RA | 1..1140 | 17..1156 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:24 Download gff for
BS08819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15634-RA | 127..1276 | 7..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:38 Download gff for
BS08819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elba3-RA | 139..1278 | 17..1156 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:12 Download gff for
BS08819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15634-RA | 127..1276 | 7..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:29 Download gff for
BS08819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elba3-RA | 139..1278 | 17..1156 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:29 Download gff for
BS08819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4687649..4688788 | 17..1156 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:38 Download gff for
BS08819.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4687649..4688788 | 17..1156 | 100 | | Plus |
BS08819.pep Sequence
Translation from 16 to 1155
> BS08819.pep
MSNISNDSGLDDSANSGAVVSANGPLAATRLSWFLAEVDDGLMKDGKPNG
RRRLCVLHSMELLESDVSDKYMTRFVEFRVNGMVLEAKLILAADERRLVD
AALLSMSKEEREDAGGQQLLVQYTENEKAGERLIQKLVSPNNVMLLSTKP
ELKGNPLVRLAPGCIAHILYAYESRDYMEKILLHLKARSFDLAFDDNLEA
EPEAMNDDTWMLVQYSPEPEMVVYQVVQYRQTVWRKENLFKDVIAYMQLP
GSDIVLQAVVISYGQDKEVQDAKYEELQRFSFDIDFPLPEELEKHPDHMT
STALFSRTSLYQKAEQRDTTGEHRELRKSLEQMSEKAQGEAQMIIDAFDM
VDNINKNLQSRLSGEVRSVVEVTSGDELH*
BS08819.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elba3-PA | 379 | CG15634-PA | 1..379 | 1..379 | 1923 | 100 | Plus |
