Clone Sequence Records
BS08820.3prime Sequence
885 bp (840 high quality bases) assembled on 2006-01-18
> BS08820.3prime
ATGGTCTAGAAAGCTTCTAATGCTGCATCTTGTTGGTTTTGGCCAGAGTG
AGGGCGCTGCCGATGCGACGGCGATCATAGAATGGCTCCGGCTGCTCCAG
CGCCCCAATGGCGGTCACTGCTGCAAAGCTGGAGCCGACGGGCTCCTCGT
ACATCTCGTGGCCCACCTGCTTCAGGTAGTCGGTAACGCTGCTGTCCACC
TCCTGCTCATAGCTCACGCGCATGGGAGCCAACTGATGATGGAGGCGGCC
ATTGTTCACGGCCGCGGTGAGGCTCTCCTTGCGTAGCAGGTACTTCATGA
TCACAGCTGCCACGCTGGTGGTGATGCGAGTGCCACCTGCTGCTCCGACC
AGCAAACGTACATTGCCTTCCTGGTCAACAATAATGCACGGACTCATCGA
GGACATGGGACGCTTGCCGGGATAAATGTAGTTGGCCGGCGAGGCGGGCA
CACCGAAGCCATTGATCACGCCCGGCGTGGAGAAGTCGTCCATCTCGTCG
TTCAGAATGATTCCCGTCTGGGTGGAAGCCACCTTGGAGCCGAAATAGTT
ATTGATGGTACTGGTGATGGACACGGCGTCTCCATTGGTGGCCAAGACAT
TCATGTGGGCGGTGCCATGGTCCTCCTCCACGGTGAAGTTGGCGCCATAG
TAGAGGTAGTCCTCCGAAGTGCTATTGTCGTGGATCAGCTTCCTTACGCT
CTCCAGGAACTCCGGCTTGAGCATCTCCTCCAGGGTGGCATTGATGGACG
CGGCGCTCACGGGATCGGCATACATATCACCCAGATTGGTGCGCTGGCCA
TANGCGTGTTTAAAGGCCTCCACCACGCGCTGCCAATAGATCGGCTCATT
GTCCGTATAGAGATCGGCCATCAGGTTGAGGATGA
BS08820.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6461-PA | 1740 | CG6461-RA | 872..1740 | 885..17 | 4326 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ggt-1-RB | 2212 | CG6461-RB | 1161..2029 | 885..17 | 4334 | 99.9 | Minus |
Ggt-1-RA | 2396 | CG6461-RA | 1345..2213 | 885..17 | 4334 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18507476..18507815 | 546..885 | 1689 | 99.7 | Plus |
X | 23542271 | X | 18506066..18506353 | 17..304 | 1440 | 100 | Plus |
X | 23542271 | X | 18506414..18506656 | 303..545 | 1215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 06:45:53 has no hits.
BS08820.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:03 Download gff for
BS08820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6461-PA | 873..1740 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:21 Download gff for
BS08820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6461-PA | 873..1740 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:10 Download gff for
BS08820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ggt-1-RA | 1184..2051 | 17..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:37:49 Download gff for
BS08820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ggt-1-RA | 1346..2213 | 17..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:37:49 Download gff for
BS08820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18506066..18506353 | 17..304 | 100 | <- | Plus |
X | 18506416..18506656 | 305..545 | 100 | <- | Plus |
X | 18507476..18507814 | 546..884 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:10 Download gff for
BS08820.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18400099..18400386 | 17..304 | 100 | <- | Plus |
arm_X | 18400449..18400689 | 305..545 | 100 | <- | Plus |
arm_X | 18401509..18401847 | 546..884 | 99 | | Plus |
BS08820.5prime Sequence
962 bp (887 high quality bases) assembled on 2006-01-18
> BS08820.5prime
GAAGTTATCAGTCGACATGAGGATTGTGTGGAGTAAGAAGCTCTTGCTAT
GGCTACTGCTGGCTGCCCTCATGGTGACGGCGTTGACTCTGGGCTTGGTC
TTCGGTCTGAAGAATCGGGACACGCTGTACATCAGCGGAGCCGTGGTGTC
CAATGGCATCGGATGTGCTGCGGTCGGCGGTGAAATGCTGACCGATGGCG
GTTCCGCCGTGGATGCAGCCATTGCTACGCTGCTGTGCGAGGGCCTGCTA
TTGCCGCACTCAATGGGCATTGGCGGTGGCTTCGTGGCCACCATATATAC
GCGAAGTAGCCGCAAGGTGGAGACGGTGATTGCCAGGGAATCGGCACCGG
CGGCCGCGCACAAGGACATGTTCGTGGGCGAGACGTCGATTACGGGCGCC
AAATCGGGTGCGGTGCCCGGCGAGATTCTTGGCTACTGGGAGATGCATCG
TCGCTATGGCATCCTGCCCTGGAAACGCCTCTTCGAGCCGTCCATTAAGC
TGGCCCGCGAGGGTCATGTTGTTTCGCGCTATCTGGCCGCCGCCATCCAA
TCCAAGCTGGATAACATTAAGGCAGATCCCGGGCTCTCGGCCGTGTTCCT
CAACGCAACCGGTGATCCCCACTTGGAGGGCGATTACATGAAGCGTCCCG
CGCTGGCCGACACGCTGGAGCGGATTGCCGAGAATGGAGCCAAGGAGTTC
TACGATGGCGGCGAGACGGGTCGCAAGTTCGTCGAGGATATCCAGAAGAT
GGGCGGCATCATTACGGAGCAGGACCTGCGCGATTACACGGTGCGCTGGG
AGAGCGATGGACACGTGTCGGCCCATGTGAGTGGCACGTACACGCTCTAT
TCCACGCCCATGCCCAGCAGCGGACCCGTTCTGGGCCTCATCCTCAACCT
GATGGCCGATCTCTATACGGACAATGAGCCGATCTATTGGCAGCGCGTGG
TGGAGGCCTTTA
BS08820.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6461-PA | 1740 | CG6461-RA | 1..946 | 17..962 | 4680 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ggt-1-RB | 2212 | CG6461-RB | 290..1235 | 17..962 | 4700 | 99.8 | Plus |
Ggt-1-RA | 2396 | CG6461-RA | 474..1419 | 17..962 | 4700 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:22:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18507741..18508683 | 962..20 | 4685 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:22:28 has no hits.
BS08820.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:04 Download gff for
BS08820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6461-PA | 1..945 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:23 Download gff for
BS08820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6461-PA | 1..945 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:22:46 Download gff for
BS08820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ggt-1-RA | 308..1256 | 14..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:52:04 Download gff for
BS08820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ggt-1-RA | 470..1418 | 14..961 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:52:04 Download gff for
BS08820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18507742..18508694 | 8..961 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:22:46 Download gff for
BS08820.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18401775..18402727 | 8..961 | 99 | | Minus |
BS08820.complete Sequence
1772 bp assembled on 2008-01-16
GenBank Submission: FJ636279
> BS08820.complete
GAAGTTATCAGTCGACATGAGGATTGTGTGGAGTAAGAAGCTCTTGCTAT
GGCTACTGCTGGCTGCCCTCATGGTGACGGCGTTGACTCTGGGCTTGGTC
TTCGGTCTGAAGAATCGGGACACGCTGTACATCAGCGGAGCCGTGGTGTC
CAATGGCATCGGATGTGCTGCGGTCGGCGGTGAAATGCTGACCGATGGCG
GTTCCGCCGTGGATGCAGCCATTGCTACGCTGCTGTGCGAGGGCCTGCTA
TTGCCGCACTCAATGGGCATTGGCGGTGGCTTCGTGGCCACCATATATAC
GCGAAGTAGCCGCAAGGTGGAGACGGTGATTGCCAGGGAATCGGCACCGG
CGGCCGCGCACAAGGACATGTTCGTGGGCGAGACGTCGATTACGGGCGCC
AAATCGGGTGCGGTGCCCGGCGAGATTCTTGGCTACTGGGAGATGCATCG
TCGCTATGGCATCCTGCCCTGGAAACGCCTCTTCGAGCCGTCCATTAAGC
TGGCCCGCGAGGGTCATGTTGTTTCGCGCTATCTGGCCGCCGCCATCCAA
TCCAAGCTGGATAACATTAAGGCAGATCCCGGGCTCTCGGCCGTGTTCCT
CAACGCAACCGGTGATCCCCACTTGGAGGGCGATTACATGAAGCGTCCCG
CGCTGGCCGACACGCTGGAGCGGATTGCCGAGAATGGAGCCAAGGAGTTC
TACGATGGCGGCGAGACGGGTCGCAAGTTCGTCGAGGATATCCAGAAGAT
GGGCGGCATCATTACGGAGCAGGACCTGCGCGATTACACGGTGCGCTGGG
AGAGCGATGGACACGTGTCGGCCCATGTGAGTGGCACGTACACGCTCTAT
TCCACGCCCATGCCCAGCAGCGGACCCGTTCTGGCCTTCATCCTCAACCT
GATGGCCGATCTCTATACGGACAATGAGCCGATCTATTGGCAGCGCGTGG
TGGAGGCCTTTAAACACGCCTATGGCCAGCGCACCAATCTGGGTGATATG
TATGCCGATCCCGTGAGCGCCGCGTCCATCAATGCCACCCTGGAGGAGAT
GCTCAAGCCGGAGTTCCTGGAGAGCGTAAGGAAGCTGATCCACGACAATA
GCACTTCGGAGGACTACCTCTACTATGGCGCCAACTTCACCGTGGAGGAG
GACCATGGCACCGCCCACATGAATGTCTTGGCCACCAATGGAGACGCCGT
GTCCATCACCAGTACCATCAATAACTATTTCGGCTCCAAGGTGGCTTCCA
CCCAGACGGGAATCATTCTGAACGACGAGATGGACGACTTCTCCACGCCG
GGCGTGATCAATGGCTTCGGTGTGCCCGCCTCGCCGGCCAACTACATTTA
TCCCGGCAAGCGTCCCATGTCCTCGATGAGTCCGTGCATTATTGTTGACC
AGGAAGGCAATGTACGTTTGCTGGTCGGAGCAGCAGGTGGCACTCGCATC
ACCACCAGCGTGGCAGCTGTGATCATGAAGTACCTGCTACGCAAGGAGAG
CCTCACCGCGGCCGTGAACAATGGCCGCCTCCATCATCAGTTGGCTCCCA
TGCGCGTGAGCTATGAGCAGGAGGTGGACAGCAGCGTTACCGACTACCTG
AAGCAGGTGGGCCACGAGATGTACGAGGAGCCCGTCGGCTCCAGCTTTGC
AGCAGTGACCGCCATTGGGGCGCTGGAGCAGCCGGAGCCATTCTATGATC
GCCGTCGCATCGGCAGCGCCCTCACTCTGGCCAAAACCAACAAGATGCAG
CATTAGAAGCTTTCTAGACCAT
BS08820.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ggt-1-RB | 1740 | CG6461-PB | 1..1740 | 17..1756 | 8700 | 100 | Plus |
Ggt-1-RA | 1740 | CG6461-PA | 1..1740 | 17..1756 | 8700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ggt-1-RB | 2212 | CG6461-RB | 290..2029 | 17..1756 | 8700 | 100 | Plus |
Ggt-1-RA | 2396 | CG6461-RA | 474..2213 | 17..1756 | 8700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18507476..18508683 | 1227..20 | 6040 | 100 | Minus |
X | 23542271 | X | 18506066..18506353 | 1756..1469 | 1440 | 100 | Minus |
X | 23542271 | X | 18506414..18506656 | 1470..1228 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:15:09 has no hits.
BS08820.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:48 Download gff for
BS08820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6461-RA | 1..1740 | 17..1756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:30 Download gff for
BS08820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6461-RA | 312..2051 | 17..1756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:25 Download gff for
BS08820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ggt-1-RA | 312..2051 | 17..1756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:48 Download gff for
BS08820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6461-RA | 308..2051 | 14..1756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:05 Download gff for
BS08820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ggt-1-RA | 474..2213 | 17..1756 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:05 Download gff for
BS08820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18506066..18506353 | 1469..1756 | 100 | <- | Minus |
X | 18506416..18506656 | 1228..1468 | 100 | <- | Minus |
X | 18507476..18508686 | 17..1227 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:25 Download gff for
BS08820.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18400099..18400386 | 1469..1756 | 100 | <- | Minus |
arm_X | 18400449..18400689 | 1228..1468 | 100 | <- | Minus |
arm_X | 18401509..18402719 | 17..1227 | 99 | | Minus |
BS08820.pep Sequence
Translation from 16 to 1755
> BS08820.pep
MRIVWSKKLLLWLLLAALMVTALTLGLVFGLKNRDTLYISGAVVSNGIGC
AAVGGEMLTDGGSAVDAAIATLLCEGLLLPHSMGIGGGFVATIYTRSSRK
VETVIARESAPAAAHKDMFVGETSITGAKSGAVPGEILGYWEMHRRYGIL
PWKRLFEPSIKLAREGHVVSRYLAAAIQSKLDNIKADPGLSAVFLNATGD
PHLEGDYMKRPALADTLERIAENGAKEFYDGGETGRKFVEDIQKMGGIIT
EQDLRDYTVRWESDGHVSAHVSGTYTLYSTPMPSSGPVLAFILNLMADLY
TDNEPIYWQRVVEAFKHAYGQRTNLGDMYADPVSAASINATLEEMLKPEF
LESVRKLIHDNSTSEDYLYYGANFTVEEDHGTAHMNVLATNGDAVSITST
INNYFGSKVASTQTGIILNDEMDDFSTPGVINGFGVPASPANYIYPGKRP
MSSMSPCIIVDQEGNVRLLVGAAGGTRITTSVAAVIMKYLLRKESLTAAV
NNGRLHHQLAPMRVSYEQEVDSSVTDYLKQVGHEMYEEPVGSSFAAVTAI
GALEQPEPFYDRRRIGSALTLAKTNKMQH*
BS08820.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ggt-1-PB | 579 | CG6461-PB | 1..579 | 1..579 | 2977 | 100 | Plus |
Ggt-1-PA | 579 | CG6461-PA | 1..579 | 1..579 | 2977 | 100 | Plus |
CG17636-PA | 571 | CG17636-PA | 6..565 | 7..571 | 1576 | 55.3 | Plus |
CG17636-PC | 585 | CG17636-PC | 20..579 | 7..571 | 1576 | 55.3 | Plus |
CG17636-PB | 501 | CG17636-PB | 1..495 | 72..571 | 1426 | 55.2 | Plus |