Clone BS08820 Report

Search the DGRC for BS08820

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptGgt-1-RA
Protein status:BS08820.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08820.3prime Sequence

885 bp (840 high quality bases) assembled on 2006-01-18

> BS08820.3prime
ATGGTCTAGAAAGCTTCTAATGCTGCATCTTGTTGGTTTTGGCCAGAGTG
AGGGCGCTGCCGATGCGACGGCGATCATAGAATGGCTCCGGCTGCTCCAG
CGCCCCAATGGCGGTCACTGCTGCAAAGCTGGAGCCGACGGGCTCCTCGT
ACATCTCGTGGCCCACCTGCTTCAGGTAGTCGGTAACGCTGCTGTCCACC
TCCTGCTCATAGCTCACGCGCATGGGAGCCAACTGATGATGGAGGCGGCC
ATTGTTCACGGCCGCGGTGAGGCTCTCCTTGCGTAGCAGGTACTTCATGA
TCACAGCTGCCACGCTGGTGGTGATGCGAGTGCCACCTGCTGCTCCGACC
AGCAAACGTACATTGCCTTCCTGGTCAACAATAATGCACGGACTCATCGA
GGACATGGGACGCTTGCCGGGATAAATGTAGTTGGCCGGCGAGGCGGGCA
CACCGAAGCCATTGATCACGCCCGGCGTGGAGAAGTCGTCCATCTCGTCG
TTCAGAATGATTCCCGTCTGGGTGGAAGCCACCTTGGAGCCGAAATAGTT
ATTGATGGTACTGGTGATGGACACGGCGTCTCCATTGGTGGCCAAGACAT
TCATGTGGGCGGTGCCATGGTCCTCCTCCACGGTGAAGTTGGCGCCATAG
TAGAGGTAGTCCTCCGAAGTGCTATTGTCGTGGATCAGCTTCCTTACGCT
CTCCAGGAACTCCGGCTTGAGCATCTCCTCCAGGGTGGCATTGATGGACG
CGGCGCTCACGGGATCGGCATACATATCACCCAGATTGGTGCGCTGGCCA
TANGCGTGTTTAAAGGCCTCCACCACGCGCTGCCAATAGATCGGCTCATT
GTCCGTATAGAGATCGGCCATCAGGTTGAGGATGA

BS08820.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6461-PA 1740 CG6461-RA 872..1740 885..17 4326 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
Ggt-1-RB 2212 CG6461-RB 1161..2029 885..17 4334 99.9 Minus
Ggt-1-RA 2396 CG6461-RA 1345..2213 885..17 4334 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18507476..18507815 546..885 1689 99.7 Plus
X 23542271 X 18506066..18506353 17..304 1440 100 Plus
X 23542271 X 18506414..18506656 303..545 1215 100 Plus
Blast to na_te.dros performed on 2015-02-01 06:45:53 has no hits.

BS08820.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:03 Download gff for BS08820.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6461-PA 873..1740 17..884 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:21 Download gff for BS08820.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6461-PA 873..1740 17..884 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:10 Download gff for BS08820.3prime
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 1184..2051 17..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:37:49 Download gff for BS08820.3prime
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 1346..2213 17..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:37:49 Download gff for BS08820.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18506066..18506353 17..304 100 <- Plus
X 18506416..18506656 305..545 100 <- Plus
X 18507476..18507814 546..884 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:10 Download gff for BS08820.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18400099..18400386 17..304 100 <- Plus
arm_X 18400449..18400689 305..545 100 <- Plus
arm_X 18401509..18401847 546..884 99   Plus

BS08820.5prime Sequence

962 bp (887 high quality bases) assembled on 2006-01-18

> BS08820.5prime
GAAGTTATCAGTCGACATGAGGATTGTGTGGAGTAAGAAGCTCTTGCTAT
GGCTACTGCTGGCTGCCCTCATGGTGACGGCGTTGACTCTGGGCTTGGTC
TTCGGTCTGAAGAATCGGGACACGCTGTACATCAGCGGAGCCGTGGTGTC
CAATGGCATCGGATGTGCTGCGGTCGGCGGTGAAATGCTGACCGATGGCG
GTTCCGCCGTGGATGCAGCCATTGCTACGCTGCTGTGCGAGGGCCTGCTA
TTGCCGCACTCAATGGGCATTGGCGGTGGCTTCGTGGCCACCATATATAC
GCGAAGTAGCCGCAAGGTGGAGACGGTGATTGCCAGGGAATCGGCACCGG
CGGCCGCGCACAAGGACATGTTCGTGGGCGAGACGTCGATTACGGGCGCC
AAATCGGGTGCGGTGCCCGGCGAGATTCTTGGCTACTGGGAGATGCATCG
TCGCTATGGCATCCTGCCCTGGAAACGCCTCTTCGAGCCGTCCATTAAGC
TGGCCCGCGAGGGTCATGTTGTTTCGCGCTATCTGGCCGCCGCCATCCAA
TCCAAGCTGGATAACATTAAGGCAGATCCCGGGCTCTCGGCCGTGTTCCT
CAACGCAACCGGTGATCCCCACTTGGAGGGCGATTACATGAAGCGTCCCG
CGCTGGCCGACACGCTGGAGCGGATTGCCGAGAATGGAGCCAAGGAGTTC
TACGATGGCGGCGAGACGGGTCGCAAGTTCGTCGAGGATATCCAGAAGAT
GGGCGGCATCATTACGGAGCAGGACCTGCGCGATTACACGGTGCGCTGGG
AGAGCGATGGACACGTGTCGGCCCATGTGAGTGGCACGTACACGCTCTAT
TCCACGCCCATGCCCAGCAGCGGACCCGTTCTGGGCCTCATCCTCAACCT
GATGGCCGATCTCTATACGGACAATGAGCCGATCTATTGGCAGCGCGTGG
TGGAGGCCTTTA

BS08820.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6461-PA 1740 CG6461-RA 1..946 17..962 4680 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
Ggt-1-RB 2212 CG6461-RB 290..1235 17..962 4700 99.8 Plus
Ggt-1-RA 2396 CG6461-RA 474..1419 17..962 4700 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18507741..18508683 962..20 4685 99.8 Minus
Blast to na_te.dros performed on 2015-02-11 13:22:28 has no hits.

BS08820.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:04 Download gff for BS08820.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6461-PA 1..945 17..961 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:23 Download gff for BS08820.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6461-PA 1..945 17..961 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:22:46 Download gff for BS08820.5prime
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 308..1256 14..961 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:52:04 Download gff for BS08820.5prime
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 470..1418 14..961 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:52:04 Download gff for BS08820.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18507742..18508694 8..961 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:22:46 Download gff for BS08820.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18401775..18402727 8..961 99   Minus

BS08820.complete Sequence

1772 bp assembled on 2008-01-16

GenBank Submission: FJ636279

> BS08820.complete
GAAGTTATCAGTCGACATGAGGATTGTGTGGAGTAAGAAGCTCTTGCTAT
GGCTACTGCTGGCTGCCCTCATGGTGACGGCGTTGACTCTGGGCTTGGTC
TTCGGTCTGAAGAATCGGGACACGCTGTACATCAGCGGAGCCGTGGTGTC
CAATGGCATCGGATGTGCTGCGGTCGGCGGTGAAATGCTGACCGATGGCG
GTTCCGCCGTGGATGCAGCCATTGCTACGCTGCTGTGCGAGGGCCTGCTA
TTGCCGCACTCAATGGGCATTGGCGGTGGCTTCGTGGCCACCATATATAC
GCGAAGTAGCCGCAAGGTGGAGACGGTGATTGCCAGGGAATCGGCACCGG
CGGCCGCGCACAAGGACATGTTCGTGGGCGAGACGTCGATTACGGGCGCC
AAATCGGGTGCGGTGCCCGGCGAGATTCTTGGCTACTGGGAGATGCATCG
TCGCTATGGCATCCTGCCCTGGAAACGCCTCTTCGAGCCGTCCATTAAGC
TGGCCCGCGAGGGTCATGTTGTTTCGCGCTATCTGGCCGCCGCCATCCAA
TCCAAGCTGGATAACATTAAGGCAGATCCCGGGCTCTCGGCCGTGTTCCT
CAACGCAACCGGTGATCCCCACTTGGAGGGCGATTACATGAAGCGTCCCG
CGCTGGCCGACACGCTGGAGCGGATTGCCGAGAATGGAGCCAAGGAGTTC
TACGATGGCGGCGAGACGGGTCGCAAGTTCGTCGAGGATATCCAGAAGAT
GGGCGGCATCATTACGGAGCAGGACCTGCGCGATTACACGGTGCGCTGGG
AGAGCGATGGACACGTGTCGGCCCATGTGAGTGGCACGTACACGCTCTAT
TCCACGCCCATGCCCAGCAGCGGACCCGTTCTGGCCTTCATCCTCAACCT
GATGGCCGATCTCTATACGGACAATGAGCCGATCTATTGGCAGCGCGTGG
TGGAGGCCTTTAAACACGCCTATGGCCAGCGCACCAATCTGGGTGATATG
TATGCCGATCCCGTGAGCGCCGCGTCCATCAATGCCACCCTGGAGGAGAT
GCTCAAGCCGGAGTTCCTGGAGAGCGTAAGGAAGCTGATCCACGACAATA
GCACTTCGGAGGACTACCTCTACTATGGCGCCAACTTCACCGTGGAGGAG
GACCATGGCACCGCCCACATGAATGTCTTGGCCACCAATGGAGACGCCGT
GTCCATCACCAGTACCATCAATAACTATTTCGGCTCCAAGGTGGCTTCCA
CCCAGACGGGAATCATTCTGAACGACGAGATGGACGACTTCTCCACGCCG
GGCGTGATCAATGGCTTCGGTGTGCCCGCCTCGCCGGCCAACTACATTTA
TCCCGGCAAGCGTCCCATGTCCTCGATGAGTCCGTGCATTATTGTTGACC
AGGAAGGCAATGTACGTTTGCTGGTCGGAGCAGCAGGTGGCACTCGCATC
ACCACCAGCGTGGCAGCTGTGATCATGAAGTACCTGCTACGCAAGGAGAG
CCTCACCGCGGCCGTGAACAATGGCCGCCTCCATCATCAGTTGGCTCCCA
TGCGCGTGAGCTATGAGCAGGAGGTGGACAGCAGCGTTACCGACTACCTG
AAGCAGGTGGGCCACGAGATGTACGAGGAGCCCGTCGGCTCCAGCTTTGC
AGCAGTGACCGCCATTGGGGCGCTGGAGCAGCCGGAGCCATTCTATGATC
GCCGTCGCATCGGCAGCGCCCTCACTCTGGCCAAAACCAACAAGATGCAG
CATTAGAAGCTTTCTAGACCAT

BS08820.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Ggt-1-RB 1740 CG6461-PB 1..1740 17..1756 8700 100 Plus
Ggt-1-RA 1740 CG6461-PA 1..1740 17..1756 8700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
Ggt-1-RB 2212 CG6461-RB 290..2029 17..1756 8700 100 Plus
Ggt-1-RA 2396 CG6461-RA 474..2213 17..1756 8700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18507476..18508683 1227..20 6040 100 Minus
X 23542271 X 18506066..18506353 1756..1469 1440 100 Minus
X 23542271 X 18506414..18506656 1470..1228 1215 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:15:09 has no hits.

BS08820.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:48 Download gff for BS08820.complete
Subject Subject Range Query Range Percent Splice Strand
CG6461-RA 1..1740 17..1756 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:32:30 Download gff for BS08820.complete
Subject Subject Range Query Range Percent Splice Strand
CG6461-RA 312..2051 17..1756 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:48:25 Download gff for BS08820.complete
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 312..2051 17..1756 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:09:48 Download gff for BS08820.complete
Subject Subject Range Query Range Percent Splice Strand
CG6461-RA 308..2051 14..1756 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:05 Download gff for BS08820.complete
Subject Subject Range Query Range Percent Splice Strand
Ggt-1-RA 474..2213 17..1756 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:05 Download gff for BS08820.complete
Subject Subject Range Query Range Percent Splice Strand
X 18506066..18506353 1469..1756 100 <- Minus
X 18506416..18506656 1228..1468 100 <- Minus
X 18507476..18508686 17..1227 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:48:25 Download gff for BS08820.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18400099..18400386 1469..1756 100 <- Minus
arm_X 18400449..18400689 1228..1468 100 <- Minus
arm_X 18401509..18402719 17..1227 99   Minus

BS08820.pep Sequence

Translation from 16 to 1755

> BS08820.pep
MRIVWSKKLLLWLLLAALMVTALTLGLVFGLKNRDTLYISGAVVSNGIGC
AAVGGEMLTDGGSAVDAAIATLLCEGLLLPHSMGIGGGFVATIYTRSSRK
VETVIARESAPAAAHKDMFVGETSITGAKSGAVPGEILGYWEMHRRYGIL
PWKRLFEPSIKLAREGHVVSRYLAAAIQSKLDNIKADPGLSAVFLNATGD
PHLEGDYMKRPALADTLERIAENGAKEFYDGGETGRKFVEDIQKMGGIIT
EQDLRDYTVRWESDGHVSAHVSGTYTLYSTPMPSSGPVLAFILNLMADLY
TDNEPIYWQRVVEAFKHAYGQRTNLGDMYADPVSAASINATLEEMLKPEF
LESVRKLIHDNSTSEDYLYYGANFTVEEDHGTAHMNVLATNGDAVSITST
INNYFGSKVASTQTGIILNDEMDDFSTPGVINGFGVPASPANYIYPGKRP
MSSMSPCIIVDQEGNVRLLVGAAGGTRITTSVAAVIMKYLLRKESLTAAV
NNGRLHHQLAPMRVSYEQEVDSSVTDYLKQVGHEMYEEPVGSSFAAVTAI
GALEQPEPFYDRRRIGSALTLAKTNKMQH*

BS08820.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:22
Subject Length Description Subject Range Query Range Score Percent Strand
Ggt-1-PB 579 CG6461-PB 1..579 1..579 2977 100 Plus
Ggt-1-PA 579 CG6461-PA 1..579 1..579 2977 100 Plus
CG17636-PA 571 CG17636-PA 6..565 7..571 1576 55.3 Plus
CG17636-PC 585 CG17636-PC 20..579 7..571 1576 55.3 Plus
CG17636-PB 501 CG17636-PB 1..495 72..571 1426 55.2 Plus