Clone BS08822 Report

Search the DGRC for BS08822

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG8121-RA
Protein status:BS08822.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08822.3prime Sequence

807 bp (806 high quality bases) assembled on 2006-01-18

> BS08822.3prime
ATGGTCTAGAAAGCTTTTAGCCCACGGGCATGGTGGACACGGTGCTGTGA
GGAGTGGTTGGCCGTGATCCTGCAAGTGAGTTTGCTGTCGATGCGTGCAG
GGAAGCCATTGTGCCCATGCGTAAATGGGCTAGATCCTCCAGCTTGGTCA
GATCCACCAGTTCCAAAAACAGAGAGTACACCACGGCCCATCCATATATA
GACAGTACACAAAAAATGGTCCAAAGGAGCACCATAATCACATTGTAGGC
AAAGTACAGATCATTGACAATGGCAAAGAAGATCAGTGCCAAAGCCCGCC
AAACAGTAAATATGGCAAAGGACCACAGCCATGGCATAACCTTCCTCTCG
TATTCCTTGCGCAGAGCCACGCAGAGAAGGACACTGGTCACAAAGTTTAT
CAGCGCCATGATAAGCGAGAACAGGGCAAAGACAATGAGCATATTGCGAA
CATGCTTGTTGCCCACATAGACGAACTCATAGGATATGATGTAGTAGCCA
TAATGTGTGGATCCTGGCGCAGCCATAGCATAGCAGTAGATGTCAAAGAT
GCTCGTGGCGATGGTGAAGAGGGACAGAAAAATGGCAAACAATCCGACCA
GCATGGCACCCTTCTGTATATCGATGTACTGATTGTTTTTAAGCAACGGT
CGCTGGTACCAAGGAATCCTGACGGATCGCGTGGATCGGGACATCTTGGA
GTGTAAATTCGTCGAGGATCTTCCCGTGGCATGGGAATAAACCGACGGAT
TGGACCGATATGTGGAGGGCGTTTTCCTACCGTAATTCATCATGTCGACT
GATAACT

BS08822.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8121-PA 777 CG8121-RA 1..777 793..17 3885 100 Minus
CG8121-PC 777 CG8121-RC 1..777 793..17 3885 100 Minus
CG8121-PB 777 CG8121-RB 1..777 793..17 3885 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8121-RB 1473 CG8121-RB 320..1097 794..17 3890 100 Minus
CG8121-RC 1298 CG8121-RC 145..922 794..17 3890 100 Minus
CG8121-RA 1504 CG8121-RA 148..925 794..17 3890 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9336481..9336719 357..119 1195 100 Minus
3R 32079331 3R 9335699..9335839 721..581 705 100 Minus
3R 32079331 3R 9335900..9336029 580..451 650 100 Minus
3R 32079331 3R 9336779..9336880 118..17 510 100 Minus
3R 32079331 3R 9336157..9336253 451..355 485 100 Minus
3R 32079331 3R 9335561..9335635 794..720 375 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:05:02 has no hits.

BS08822.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:08 Download gff for BS08822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-PA 1..777 17..793 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:27 Download gff for BS08822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-PB 1..777 17..793 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:28 Download gff for BS08822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-RA 142..925 17..800 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:45 Download gff for BS08822.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-RA 142..925 17..800 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:45 Download gff for BS08822.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9335701..9335839 581..719 100 -> Minus
3R 9335900..9336029 451..580 100 -> Minus
3R 9336158..9336252 356..450 100 -> Minus
3R 9336779..9336880 17..118 100   Minus
3R 9336483..9336719 119..355 100 -> Minus
3R 9335555..9335635 720..800 96 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:28 Download gff for BS08822.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5161277..5161357 720..800 96 -> Minus
arm_3R 5161423..5161561 581..719 100 -> Minus
arm_3R 5161622..5161751 451..580 100 -> Minus
arm_3R 5161880..5161974 356..450 100 -> Minus
arm_3R 5162205..5162441 119..355 100 -> Minus
arm_3R 5162501..5162602 17..118 100   Minus

BS08822.5prime Sequence

807 bp (806 high quality bases) assembled on 2006-01-18

> BS08822.5prime
GAAGTTATCAGTCGACATGATGAATTACGGTAGGAAAACGCCCTCCACAT
ATCGGTCCAATCCGTCGGTTTATTCCCATGCCACGGGAAGATCCTCGACG
AATTTACACTCCAAGATGTCCCGATCCACGCGATCCGTCAGGATTCCTTG
GTACCAGCGACCGTTGCTTAAAAACAATCAGTACATCGATATACAGAAGG
GTGCCATGCTGGTCGGATTGTTTGCCATTTTTCTGTCCCTCTTCACCATC
GCCACGAGCATCTTTGACATCTACTGCTATGCTATGGCTGCGCCAGGATC
CACACATTATGGCTACTACATCATATCCTATGAGTTCGTCTATGTGGGCA
ACAAGCATGTTCGCAATATGCTCATTGTCTTTGCCCTGTTCTCGCTTATC
ATGGCGCTGATAAACTTTGTGACCAGTGTCCTTCTCTGCGTGGCTCTGCG
CAAGGAATACGAGAGGAAGGTTATGCCATGGCTGTGGTCCTTTGCCATAT
TTACTGTTTGGCGGGCTTTGGCACTGATCTTCTTTGCCATTGTCAATGAT
CTGTACTTTGCCTACAATGTGATTATGGTGCTCCTTTGGACCATTTTTTG
TGTACTGTCTATATATGGATGGGCCGTGGTGTACTCTCTGTTTTTGGAAC
TGGTGGATCTGACCAAGCTGGAGGATCTAGCCCATTTACGCATGGGCACA
ATGGCTTCCCTGCACGCATCGACAGCAAACTCACTTGCAGGATCACGGCC
AACCACTCCTCACAGCACCGTGTCCACCATGCCCGTGGGCTAAAAGCTTT
CTAGACC

BS08822.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG8121-PA 777 CG8121-RA 1..777 17..793 3885 100 Plus
CG8121-PC 777 CG8121-RC 1..777 17..793 3885 100 Plus
CG8121-PB 777 CG8121-RB 1..777 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:24:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8121-RB 1473 CG8121-RB 320..1097 16..793 3890 100 Plus
CG8121-RC 1298 CG8121-RC 145..922 16..793 3890 100 Plus
CG8121-RA 1504 CG8121-RA 148..925 16..793 3890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9336481..9336719 453..691 1195 100 Plus
3R 32079331 3R 9335699..9335839 89..229 705 100 Plus
3R 32079331 3R 9335900..9336029 230..359 650 100 Plus
3R 32079331 3R 9336779..9336880 692..793 510 100 Plus
3R 32079331 3R 9336157..9336253 359..455 485 100 Plus
3R 32079331 3R 9335561..9335635 16..90 375 100 Plus
Blast to na_te.dros performed on 2015-02-11 13:24:19 has no hits.

BS08822.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:09 Download gff for BS08822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-PA 1..777 17..793 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:29 Download gff for BS08822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-PB 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:23:16 Download gff for BS08822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-RA 142..925 10..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:54 Download gff for BS08822.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-RA 142..925 10..793 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:54 Download gff for BS08822.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9335555..9335635 10..90 96 -> Plus
3R 9335701..9335839 91..229 100 -> Plus
3R 9335900..9336029 230..359 100 -> Plus
3R 9336158..9336252 360..454 100 -> Plus
3R 9336483..9336719 455..691 100 -> Plus
3R 9336779..9336880 692..793 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:23:16 Download gff for BS08822.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5161277..5161357 10..90 96 -> Plus
arm_3R 5161423..5161561 91..229 100 -> Plus
arm_3R 5161622..5161751 230..359 100 -> Plus
arm_3R 5161880..5161974 360..454 100 -> Plus
arm_3R 5162205..5162441 455..691 100 -> Plus
arm_3R 5162501..5162602 692..793 100   Plus

BS08822.complete Sequence

809 bp (809 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636280

> BS08822.complete
GAAGTTATCAGTCGACATGATGAATTACGGTAGGAAAACGCCCTCCACAT
ATCGGTCCAATCCGTCGGTTTATTCCCATGCCACGGGAAGATCCTCGACG
AATTTACACTCCAAGATGTCCCGATCCACGCGATCCGTCAGGATTCCTTG
GTACCAGCGACCGTTGCTTAAAAACAATCAGTACATCGATATACAGAAGG
GTGCCATGCTGGTCGGATTGTTTGCCATTTTTCTGTCCCTCTTCACCATC
GCCACGAGCATCTTTGACATCTACTGCTATGCTATGGCTGCGCCAGGATC
CACACATTATGGCTACTACATCATATCCTATGAGTTCGTCTATGTGGGCA
ACAAGCATGTTCGCAATATGCTCATTGTCTTTGCCCTGTTCTCGCTTATC
ATGGCGCTGATAAACTTTGTGACCAGTGTCCTTCTCTGCGTGGCTCTGCG
CAAGGAATACGAGAGGAAGGTTATGCCATGGCTGTGGTCCTTTGCCATAT
TTACTGTTTGGCGGGCTTTGGCACTGATCTTCTTTGCCATTGTCAATGAT
CTGTACTTTGCCTACAATGTGATTATGGTGCTCCTTTGGACCATTTTTTG
TGTACTGTCTATATATGGATGGGCCGTGGTGTACTCTCTGTTTTTGGAAC
TGGTGGATCTGACCAAGCTGGAGGATCTAGCCCATTTACGCATGGGCACA
ATGGCTTCCCTGCACGCATCGACAGCAAACTCACTTGCAGGATCACGGCC
AACCACTCCTCACAGCACCGTGTCCACCATGCCCGTGGGCTAAAAGCTTT
CTAGACCAT

BS08822.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8121-RB 777 CG8121-PB 1..777 17..793 3885 100 Plus
CG8121-RC 777 CG8121-PC 1..777 17..793 3885 100 Plus
CG8121-RA 777 CG8121-PA 1..777 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8121-RB 1473 CG8121-RB 320..1097 16..793 3890 100 Plus
CG8121-RC 1298 CG8121-RC 145..922 16..793 3890 100 Plus
CG8121-RA 1504 CG8121-RA 148..925 16..793 3890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9336481..9336719 453..691 1195 100 Plus
3R 32079331 3R 9335699..9335839 89..229 705 100 Plus
3R 32079331 3R 9335900..9336029 230..359 650 100 Plus
3R 32079331 3R 9336779..9336880 692..793 510 100 Plus
3R 32079331 3R 9336157..9336253 359..455 485 100 Plus
3R 32079331 3R 9335561..9335635 16..90 375 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:42:02 has no hits.

BS08822.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:13 Download gff for BS08822.complete
Subject Subject Range Query Range Percent Splice Strand
CG8121-RB 1..777 17..793 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:07 Download gff for BS08822.complete
Subject Subject Range Query Range Percent Splice Strand
CG8121-RB 314..1097 10..793 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:17 Download gff for BS08822.complete
Subject Subject Range Query Range Percent Splice Strand
CG8121-RA 149..923 17..791 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:14 Download gff for BS08822.complete
Subject Subject Range Query Range Percent Splice Strand
CG8121-RB 314..1097 10..793 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:48 Download gff for BS08822.complete
Subject Subject Range Query Range Percent Splice Strand
CG8121-RA 149..923 17..791 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:48 Download gff for BS08822.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9335562..9335635 17..90 100 -> Plus
3R 9335701..9335839 91..229 100 -> Plus
3R 9335900..9336029 230..359 100 -> Plus
3R 9336158..9336252 360..454 100 -> Plus
3R 9336483..9336719 455..691 100 -> Plus
3R 9336779..9336878 692..791 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:17 Download gff for BS08822.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5161284..5161357 17..90 100 -> Plus
arm_3R 5161423..5161561 91..229 100 -> Plus
arm_3R 5161622..5161751 230..359 100 -> Plus
arm_3R 5161880..5161974 360..454 100 -> Plus
arm_3R 5162205..5162441 455..691 100 -> Plus
arm_3R 5162501..5162600 692..791 100   Plus

BS08822.pep Sequence

Translation from 16 to 792

> BS08822.pep
MMNYGRKTPSTYRSNPSVYSHATGRSSTNLHSKMSRSTRSVRIPWYQRPL
LKNNQYIDIQKGAMLVGLFAIFLSLFTIATSIFDIYCYAMAAPGSTHYGY
YIISYEFVYVGNKHVRNMLIVFALFSLIMALINFVTSVLLCVALRKEYER
KVMPWLWSFAIFTVWRALALIFFAIVNDLYFAYNVIMVLLWTIFCVLSIY
GWAVVYSLFLELVDLTKLEDLAHLRMGTMASLHASTANSLAGSRPTTPHS
TVSTMPVG*

BS08822.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8121-PB 258 CG8121-PB 1..258 1..258 1338 100 Plus
CG8121-PC 258 CG8121-PC 1..258 1..258 1338 100 Plus
CG8121-PA 258 CG8121-PA 1..258 1..258 1338 100 Plus