Clone Sequence Records
BS08822.3prime Sequence
807 bp (806 high quality bases) assembled on 2006-01-18
> BS08822.3prime
ATGGTCTAGAAAGCTTTTAGCCCACGGGCATGGTGGACACGGTGCTGTGA
GGAGTGGTTGGCCGTGATCCTGCAAGTGAGTTTGCTGTCGATGCGTGCAG
GGAAGCCATTGTGCCCATGCGTAAATGGGCTAGATCCTCCAGCTTGGTCA
GATCCACCAGTTCCAAAAACAGAGAGTACACCACGGCCCATCCATATATA
GACAGTACACAAAAAATGGTCCAAAGGAGCACCATAATCACATTGTAGGC
AAAGTACAGATCATTGACAATGGCAAAGAAGATCAGTGCCAAAGCCCGCC
AAACAGTAAATATGGCAAAGGACCACAGCCATGGCATAACCTTCCTCTCG
TATTCCTTGCGCAGAGCCACGCAGAGAAGGACACTGGTCACAAAGTTTAT
CAGCGCCATGATAAGCGAGAACAGGGCAAAGACAATGAGCATATTGCGAA
CATGCTTGTTGCCCACATAGACGAACTCATAGGATATGATGTAGTAGCCA
TAATGTGTGGATCCTGGCGCAGCCATAGCATAGCAGTAGATGTCAAAGAT
GCTCGTGGCGATGGTGAAGAGGGACAGAAAAATGGCAAACAATCCGACCA
GCATGGCACCCTTCTGTATATCGATGTACTGATTGTTTTTAAGCAACGGT
CGCTGGTACCAAGGAATCCTGACGGATCGCGTGGATCGGGACATCTTGGA
GTGTAAATTCGTCGAGGATCTTCCCGTGGCATGGGAATAAACCGACGGAT
TGGACCGATATGTGGAGGGCGTTTTCCTACCGTAATTCATCATGTCGACT
GATAACT
BS08822.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8121-PA | 777 | CG8121-RA | 1..777 | 793..17 | 3885 | 100 | Minus |
CG8121-PC | 777 | CG8121-RC | 1..777 | 793..17 | 3885 | 100 | Minus |
CG8121-PB | 777 | CG8121-RB | 1..777 | 793..17 | 3885 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8121-RB | 1473 | CG8121-RB | 320..1097 | 794..17 | 3890 | 100 | Minus |
CG8121-RC | 1298 | CG8121-RC | 145..922 | 794..17 | 3890 | 100 | Minus |
CG8121-RA | 1504 | CG8121-RA | 148..925 | 794..17 | 3890 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9336481..9336719 | 357..119 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 9335699..9335839 | 721..581 | 705 | 100 | Minus |
3R | 32079331 | 3R | 9335900..9336029 | 580..451 | 650 | 100 | Minus |
3R | 32079331 | 3R | 9336779..9336880 | 118..17 | 510 | 100 | Minus |
3R | 32079331 | 3R | 9336157..9336253 | 451..355 | 485 | 100 | Minus |
3R | 32079331 | 3R | 9335561..9335635 | 794..720 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:05:02 has no hits.
BS08822.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:08 Download gff for
BS08822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-PA | 1..777 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:27 Download gff for
BS08822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-PB | 1..777 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:28 Download gff for
BS08822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RA | 142..925 | 17..800 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:45 Download gff for
BS08822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RA | 142..925 | 17..800 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:45 Download gff for
BS08822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9335701..9335839 | 581..719 | 100 | -> | Minus |
3R | 9335900..9336029 | 451..580 | 100 | -> | Minus |
3R | 9336158..9336252 | 356..450 | 100 | -> | Minus |
3R | 9336779..9336880 | 17..118 | 100 | | Minus |
3R | 9336483..9336719 | 119..355 | 100 | -> | Minus |
3R | 9335555..9335635 | 720..800 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:28 Download gff for
BS08822.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5161277..5161357 | 720..800 | 96 | -> | Minus |
arm_3R | 5161423..5161561 | 581..719 | 100 | -> | Minus |
arm_3R | 5161622..5161751 | 451..580 | 100 | -> | Minus |
arm_3R | 5161880..5161974 | 356..450 | 100 | -> | Minus |
arm_3R | 5162205..5162441 | 119..355 | 100 | -> | Minus |
arm_3R | 5162501..5162602 | 17..118 | 100 | | Minus |
BS08822.5prime Sequence
807 bp (806 high quality bases) assembled on 2006-01-18
> BS08822.5prime
GAAGTTATCAGTCGACATGATGAATTACGGTAGGAAAACGCCCTCCACAT
ATCGGTCCAATCCGTCGGTTTATTCCCATGCCACGGGAAGATCCTCGACG
AATTTACACTCCAAGATGTCCCGATCCACGCGATCCGTCAGGATTCCTTG
GTACCAGCGACCGTTGCTTAAAAACAATCAGTACATCGATATACAGAAGG
GTGCCATGCTGGTCGGATTGTTTGCCATTTTTCTGTCCCTCTTCACCATC
GCCACGAGCATCTTTGACATCTACTGCTATGCTATGGCTGCGCCAGGATC
CACACATTATGGCTACTACATCATATCCTATGAGTTCGTCTATGTGGGCA
ACAAGCATGTTCGCAATATGCTCATTGTCTTTGCCCTGTTCTCGCTTATC
ATGGCGCTGATAAACTTTGTGACCAGTGTCCTTCTCTGCGTGGCTCTGCG
CAAGGAATACGAGAGGAAGGTTATGCCATGGCTGTGGTCCTTTGCCATAT
TTACTGTTTGGCGGGCTTTGGCACTGATCTTCTTTGCCATTGTCAATGAT
CTGTACTTTGCCTACAATGTGATTATGGTGCTCCTTTGGACCATTTTTTG
TGTACTGTCTATATATGGATGGGCCGTGGTGTACTCTCTGTTTTTGGAAC
TGGTGGATCTGACCAAGCTGGAGGATCTAGCCCATTTACGCATGGGCACA
ATGGCTTCCCTGCACGCATCGACAGCAAACTCACTTGCAGGATCACGGCC
AACCACTCCTCACAGCACCGTGTCCACCATGCCCGTGGGCTAAAAGCTTT
CTAGACC
BS08822.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8121-PA | 777 | CG8121-RA | 1..777 | 17..793 | 3885 | 100 | Plus |
CG8121-PC | 777 | CG8121-RC | 1..777 | 17..793 | 3885 | 100 | Plus |
CG8121-PB | 777 | CG8121-RB | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8121-RB | 1473 | CG8121-RB | 320..1097 | 16..793 | 3890 | 100 | Plus |
CG8121-RC | 1298 | CG8121-RC | 145..922 | 16..793 | 3890 | 100 | Plus |
CG8121-RA | 1504 | CG8121-RA | 148..925 | 16..793 | 3890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9336481..9336719 | 453..691 | 1195 | 100 | Plus |
3R | 32079331 | 3R | 9335699..9335839 | 89..229 | 705 | 100 | Plus |
3R | 32079331 | 3R | 9335900..9336029 | 230..359 | 650 | 100 | Plus |
3R | 32079331 | 3R | 9336779..9336880 | 692..793 | 510 | 100 | Plus |
3R | 32079331 | 3R | 9336157..9336253 | 359..455 | 485 | 100 | Plus |
3R | 32079331 | 3R | 9335561..9335635 | 16..90 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:24:19 has no hits.
BS08822.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:09 Download gff for
BS08822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-PA | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:29 Download gff for
BS08822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-PB | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:23:16 Download gff for
BS08822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RA | 142..925 | 10..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:54:54 Download gff for
BS08822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RA | 142..925 | 10..793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:54:54 Download gff for
BS08822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9335555..9335635 | 10..90 | 96 | -> | Plus |
3R | 9335701..9335839 | 91..229 | 100 | -> | Plus |
3R | 9335900..9336029 | 230..359 | 100 | -> | Plus |
3R | 9336158..9336252 | 360..454 | 100 | -> | Plus |
3R | 9336483..9336719 | 455..691 | 100 | -> | Plus |
3R | 9336779..9336880 | 692..793 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:23:16 Download gff for
BS08822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5161277..5161357 | 10..90 | 96 | -> | Plus |
arm_3R | 5161423..5161561 | 91..229 | 100 | -> | Plus |
arm_3R | 5161622..5161751 | 230..359 | 100 | -> | Plus |
arm_3R | 5161880..5161974 | 360..454 | 100 | -> | Plus |
arm_3R | 5162205..5162441 | 455..691 | 100 | -> | Plus |
arm_3R | 5162501..5162602 | 692..793 | 100 | | Plus |
BS08822.complete Sequence
809 bp (809 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636280
> BS08822.complete
GAAGTTATCAGTCGACATGATGAATTACGGTAGGAAAACGCCCTCCACAT
ATCGGTCCAATCCGTCGGTTTATTCCCATGCCACGGGAAGATCCTCGACG
AATTTACACTCCAAGATGTCCCGATCCACGCGATCCGTCAGGATTCCTTG
GTACCAGCGACCGTTGCTTAAAAACAATCAGTACATCGATATACAGAAGG
GTGCCATGCTGGTCGGATTGTTTGCCATTTTTCTGTCCCTCTTCACCATC
GCCACGAGCATCTTTGACATCTACTGCTATGCTATGGCTGCGCCAGGATC
CACACATTATGGCTACTACATCATATCCTATGAGTTCGTCTATGTGGGCA
ACAAGCATGTTCGCAATATGCTCATTGTCTTTGCCCTGTTCTCGCTTATC
ATGGCGCTGATAAACTTTGTGACCAGTGTCCTTCTCTGCGTGGCTCTGCG
CAAGGAATACGAGAGGAAGGTTATGCCATGGCTGTGGTCCTTTGCCATAT
TTACTGTTTGGCGGGCTTTGGCACTGATCTTCTTTGCCATTGTCAATGAT
CTGTACTTTGCCTACAATGTGATTATGGTGCTCCTTTGGACCATTTTTTG
TGTACTGTCTATATATGGATGGGCCGTGGTGTACTCTCTGTTTTTGGAAC
TGGTGGATCTGACCAAGCTGGAGGATCTAGCCCATTTACGCATGGGCACA
ATGGCTTCCCTGCACGCATCGACAGCAAACTCACTTGCAGGATCACGGCC
AACCACTCCTCACAGCACCGTGTCCACCATGCCCGTGGGCTAAAAGCTTT
CTAGACCAT
BS08822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8121-RB | 777 | CG8121-PB | 1..777 | 17..793 | 3885 | 100 | Plus |
CG8121-RC | 777 | CG8121-PC | 1..777 | 17..793 | 3885 | 100 | Plus |
CG8121-RA | 777 | CG8121-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8121-RB | 1473 | CG8121-RB | 320..1097 | 16..793 | 3890 | 100 | Plus |
CG8121-RC | 1298 | CG8121-RC | 145..922 | 16..793 | 3890 | 100 | Plus |
CG8121-RA | 1504 | CG8121-RA | 148..925 | 16..793 | 3890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9336481..9336719 | 453..691 | 1195 | 100 | Plus |
3R | 32079331 | 3R | 9335699..9335839 | 89..229 | 705 | 100 | Plus |
3R | 32079331 | 3R | 9335900..9336029 | 230..359 | 650 | 100 | Plus |
3R | 32079331 | 3R | 9336779..9336880 | 692..793 | 510 | 100 | Plus |
3R | 32079331 | 3R | 9336157..9336253 | 359..455 | 485 | 100 | Plus |
3R | 32079331 | 3R | 9335561..9335635 | 16..90 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:42:02 has no hits.
BS08822.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:13 Download gff for
BS08822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RB | 1..777 | 17..793 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:37:07 Download gff for
BS08822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RB | 314..1097 | 10..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:17 Download gff for
BS08822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RA | 149..923 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:14 Download gff for
BS08822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RB | 314..1097 | 10..793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:48 Download gff for
BS08822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RA | 149..923 | 17..791 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:48 Download gff for
BS08822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9335562..9335635 | 17..90 | 100 | -> | Plus |
3R | 9335701..9335839 | 91..229 | 100 | -> | Plus |
3R | 9335900..9336029 | 230..359 | 100 | -> | Plus |
3R | 9336158..9336252 | 360..454 | 100 | -> | Plus |
3R | 9336483..9336719 | 455..691 | 100 | -> | Plus |
3R | 9336779..9336878 | 692..791 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:17 Download gff for
BS08822.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5161284..5161357 | 17..90 | 100 | -> | Plus |
arm_3R | 5161423..5161561 | 91..229 | 100 | -> | Plus |
arm_3R | 5161622..5161751 | 230..359 | 100 | -> | Plus |
arm_3R | 5161880..5161974 | 360..454 | 100 | -> | Plus |
arm_3R | 5162205..5162441 | 455..691 | 100 | -> | Plus |
arm_3R | 5162501..5162600 | 692..791 | 100 | | Plus |
BS08822.pep Sequence
Translation from 16 to 792
> BS08822.pep
MMNYGRKTPSTYRSNPSVYSHATGRSSTNLHSKMSRSTRSVRIPWYQRPL
LKNNQYIDIQKGAMLVGLFAIFLSLFTIATSIFDIYCYAMAAPGSTHYGY
YIISYEFVYVGNKHVRNMLIVFALFSLIMALINFVTSVLLCVALRKEYER
KVMPWLWSFAIFTVWRALALIFFAIVNDLYFAYNVIMVLLWTIFCVLSIY
GWAVVYSLFLELVDLTKLEDLAHLRMGTMASLHASTANSLAGSRPTTPHS
TVSTMPVG*
BS08822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8121-PB | 258 | CG8121-PB | 1..258 | 1..258 | 1338 | 100 | Plus |
CG8121-PC | 258 | CG8121-PC | 1..258 | 1..258 | 1338 | 100 | Plus |
CG8121-PA | 258 | CG8121-PA | 1..258 | 1..258 | 1338 | 100 | Plus |