Clone Sequence Records
BS08823.3prime Sequence
820 bp (792 high quality bases) assembled on 2006-01-18
> BS08823.3prime
ATGGTCTAGAAAGCTTCTATACAGTCGTGTAATGCGCCTTGCAGTGAACA
ATAAATTCGGACACGGGATCGTTGTCGCCCTCGCCGCGCATTGTACCGGT
GATCTCCTCGTTCTCCACCATCGGCAGGAACAGCTGCACGAACTCCGGCG
AGTAGGGATGTGTGATAGTCTCCAGCACCTCGGTGACAAAGTATCGTATT
AGCGAAATGTCTGTGTCCTCGATGGCGCAGCACTGCTTTATGTATCTGAG
AACGGGTACAACGCAGCCGCGCGTCAGCAGGTTAACCATTCGGTCCAGGA
TCATTTTCTTCATTTCCAATTGAACGAGAATCTCCAGCTCATCCTGCTTG
GACTCAAATAAGCGGATGAGCAGGAAGAGGATCTGCTGCTGCAAGGTGGG
ATGAACGGCGGCCACTTCATCCAGTACCGCCAAGTGCGTGGGACAGCTGT
CTGTGGAGAGCTTGAAATATGAAGGCTCCATAACAACGTTTTCGATCCAC
CGAATGACACCAACTCCCACCACAGGATATTTGATGCAATTATACAGCGT
TTGCAACTCGGCGATTAGCTCGGTGGATCCCTGGTCCACATTACAAATGG
TGTGTGCCTTTTCGATAGCCTGAATGGTGCTCTTTAGCTCCTCCTTGTTT
AGCATGCGCTCAGTCATTGGTCGCTTTTTGGCCGGCTGGTCGATGACCGC
GGACGCGTAGGCTAGCAGAAACATATACTTCGGTTTGTGCTCGGGATTGA
TTTTAACGCCGGAACGAAAGAGCGCGTCTACCAGTAGCTCCAGAAACTGG
GGGTTTCGTATCAAGTCGAT
BS08823.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9984-PA | 1737 | TH1-RA | 934..1737 | 820..17 | 4020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TH1-RB | 1967 | CG9984-RB | 1018..1822 | 820..16 | 4025 | 100 | Minus |
TH1-RA | 2297 | CG9984-RA | 1018..1822 | 820..16 | 4025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16389396..16389877 | 49..530 | 2410 | 100 | Plus |
X | 23542271 | X | 16389946..16390235 | 531..820 | 1450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:04:39 has no hits.
BS08823.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:10 Download gff for
BS08823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TH1-PA | 934..1737 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:31 Download gff for
BS08823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9984-PA | 934..1737 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:24 Download gff for
BS08823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TH1-RA | 1018..1824 | 11..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:40 Download gff for
BS08823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TH1-RA | 1018..1824 | 11..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:40 Download gff for
BS08823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16389946..16390235 | 531..820 | 100 | | Plus |
X | 16389293..16389327 | 11..48 | 92 | <- | Plus |
X | 16389396..16389877 | 49..530 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:24 Download gff for
BS08823.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16283326..16283360 | 11..48 | 92 | <- | Plus |
arm_X | 16283429..16283910 | 49..530 | 100 | <- | Plus |
arm_X | 16283979..16284268 | 531..820 | 100 | | Plus |
BS08823.5prime Sequence
858 bp (857 high quality bases) assembled on 2006-01-18
> BS08823.5prime
GAAGTTATCAGTCGACATGGAAGTGGAATACGACGACTCTGGTTGGCAGG
GCCGCGCCAAAGGACAAACCAATCCGGAGGAAACGCTTGAGGACAATCCG
CAGAAGACGATACAGGAATGCCTGGAGAAGTTCCTCACACCGGACTACAT
CATGGAGCCGGGGATATTTACGCAGCTGAAGCGCTACTTTCAGTCGGGCG
GATCTCCGGAGGAGGTTATATCGATGCTATCCGAGAACTACAAGGCGGTG
GCCCAGATGGCCAACCTGCTTGCGGAATGGCTCATCCTGGCGGGCGTCAA
GGTTACCGAAGTCCAGGCCATGGTGGAGAATCATCTCAAGGAAATGATTC
TTAAGTCCTTCGATCCCAAGAAGGCGGACACCATATTCACGGAGGAGGGT
GAGACGCCCGACTGGCTAACCGAGATGATCGACCACTATACGTGGCGCTC
GCTAATCTACCGACTGGCCGAAGAATATCCCGATTGTCTAATGCTGAACT
TTACAATCAAGTTGATCTCGGACGCGGGCTTCCAGAGCGAGATCACTTCC
ATTTCGACAGCGGCACAGCAGATTGAGGTTTTCTCGCGGGTTCTAAAGAC
CTCGATCGTCAAATTTCTAAACAATCCGGATGATGTGCACGGTGCCATTC
AGGAGTGCGCACGAATGGTCTGCCATGGCCAGCACACTTACGTATACTCC
CAGGTGCTCATCCAGGTCCTCAGCCAGGAGCAGAAGGGTGGGTTCAACAT
GAAGCGGCTCTCTCAGGAAATTATTAAATACGCCCTGCAGAACAATCAAA
ATGTAACGCCTATTACAATGGCCCCTGAATGGTTCGGCAGTCTATCCGCA
AGCATGTC
BS08823.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9984-PA | 1737 | TH1-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
CG9984-PA | 1737 | TH1-RA | 806..841 | 823..858 | 180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:33:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TH1-RB | 1967 | CG9984-RB | 85..925 | 17..858 | 4185 | 99.9 | Plus |
TH1-RA | 2297 | CG9984-RA | 85..925 | 17..858 | 4185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:33:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16390453..16391177 | 802..78 | 3580 | 99.6 | Minus |
X | 23542271 | X | 16391291..16391354 | 80..17 | 320 | 100 | Minus |
X | 23542271 | X | 16390328..16390392 | 858..793 | 280 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:33:06 has no hits.
BS08823.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:11 Download gff for
BS08823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TH1-PA | 1..841 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:32 Download gff for
BS08823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9984-PA | 1..841 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:58:10 Download gff for
BS08823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TH1-RA | 78..925 | 10..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:40 Download gff for
BS08823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TH1-RA | 78..925 | 10..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:40 Download gff for
BS08823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16390328..16390392 | 793..858 | 98 | <- | Minus |
X | 16390463..16391175 | 80..792 | 100 | <- | Minus |
X | 16391292..16391361 | 10..79 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:58:10 Download gff for
BS08823.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16284361..16284425 | 793..858 | 98 | <- | Minus |
arm_X | 16284496..16285208 | 80..792 | 100 | <- | Minus |
arm_X | 16285325..16285394 | 10..79 | 94 | | Minus |
BS08823.complete Sequence
1769 bp assembled on 2008-08-14
GenBank Submission: FJ636281
> BS08823.complete
GAAGTTATCAGTCGACATGGAAGTGGAATACGACGACTCTGGTTGGCAGG
GCCGCGCCAAAGGACAAACCAATCCGGAGGAAACGCTTGAGGACAATCCG
CAGAAGACGATACAGGAATGCCTGGAGAAGTTCCTCACACCGGACTACAT
CATGGAGCCGGGGATATTTACGCAGCTGAAGCGCTACTTTCAGTCGGGCG
GATCTCCGGAGGAGGTTATATCGATGCTATCCGAGAACTACAAGGCGGTG
GCCCAGATGGCCAACCTGCTTGCGGAATGGCTCATCCTGGCGGGCGTCAA
GGTTACCGAAGTCCAGGCCATGGTGGAGAATCATCTCAAGGAAATGATTC
TTAAGTCCTTCGATCCCAAGAAGGCGGACACCATATTCACGGAGGAGGGT
GAGACGCCCGACTGGCTAACCGAGATGATCGACCACTATACGTGGCGCTC
GCTAATCTACCGACTGGCCGAAGAATATCCCGATTGTCTAATGCTGAACT
TTACAATCAAGTTGATCTCGGACGCGGGCTTCCAGAGCGAGATCACTTCC
ATTTCGACAGCGGCACAGCAGATTGAGGTTTTCTCGCGGGTTCTAAAGAC
CTCGATCGTCAAATTTCTAAACAATCCGGATGATGTGCACGGTGCCATTC
AGGAGTGCGCACGAATGGTCTGCCATGGCCAGCACACTTACGTATACTCC
CAGGTGCTCATCCAGGTCCTCAGCCAGGAGCAGAAGGGTGGGTTCAACAT
GAAGCGGCTCTCTCAGGAAATTATTAAATACGCCCTGCAGAACAATCAAA
ATGTAACGCCTATTACAATGGCCCTGAATGGTTCGGCAGTCTATCCGCAA
GCATGTCAAGCCCTAACTTCCATGCTCACCCGCAATACACTGAATCCCGC
CGATATCACCGTGCTGTTTCGCAACTACTCCGGTTCCGATCCACCGCCCA
TCGACTTGATACGAAACCCCCAGTTTCTGGAGCTACTGGTAGACGCGCTC
TTTCGTTCCGGCGTTAAAATCAATCCCGAGCACAAACCGAAGTATATGTT
TCTGCTAGCCTACGCGTCCGCGGTCATCGACCAGCCGGCCAAAAAGCGAC
CAATGACTGAGCGCATGCTAAACAAGGAGGAGCTAAAGAGCACCATTCAG
GCTATCGAAAAGGCACACACCATTTGTAATGTGGACCAGGGATCCACCGA
GCTAATCGCCGAGTTGCAAACGCTGTATAATTGCATCAAATATCCTGTGG
TGGGAGTTGGTGTCATTCGGTGGATCGAAAACGTTGTTATGGAGCCTTCA
TATTTCAAGCTCTCCACAGACAGCTGTCCCACGCACTTGGCGGTACTGGA
TGAAGTGGCCGCCGTTCATCCCACCTTGCAGCAGCAGATCCTCTTCCTGC
TCATCCGCTTATTTGAGTCCAAGCAGGATGAGCTGGAGATTCTCGTTCAA
TTGGAAATGAAGAAAATGATCCTGGACCGAATGGTTAACCTGCTGACGCG
CGGCTGCGTTGTACCCGTTCTCAGATACATAAAGCAGTGCTGCGCCATCG
AGGACACAGACATTTCGCTAATACGATACTTTGTCACCGAGGTGCTGGAG
ACTATCACACATCCCTACTCGCCGGAGTTCGTGCAGCTGTTCCTGCCGAT
GGTGGAGAACGAGGAGATCACCGGTACAATGCGCGGCGAGGGCGACAACG
ATCCCGTGTCCGAATTTATTGTTCACTGCAAGGCGCATTACACGACTGTA
TAGAAGCTTTCTAGACCAT
BS08823.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TH1-RB | 1737 | CG9984-PB | 1..1737 | 17..1753 | 8685 | 100 | Plus |
TH1-RA | 1737 | CG9984-PA | 1..1737 | 17..1753 | 8685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TH1-RB | 1967 | CG9984-RB | 85..1822 | 17..1754 | 8690 | 100 | Plus |
TH1-RA | 2297 | CG9984-RA | 85..1822 | 17..1754 | 8690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16390453..16391177 | 802..78 | 3580 | 99.6 | Minus |
X | 23542271 | X | 16389396..16389877 | 1721..1240 | 2410 | 100 | Minus |
X | 23542271 | X | 16389946..16390392 | 1239..793 | 2235 | 100 | Minus |
X | 23542271 | X | 16391291..16391354 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:22:32 has no hits.
BS08823.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:00 Download gff for
BS08823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TH1-RA | 50..1796 | 10..1759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:20 Download gff for
BS08823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TH1-RA | 85..1821 | 17..1753 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:24 Download gff for
BS08823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TH1-RA | 57..1793 | 17..1753 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:10 Download gff for
BS08823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TH1-RA | 85..1821 | 17..1753 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:10 Download gff for
BS08823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16389296..16389327 | 1722..1753 | 100 | <- | Minus |
X | 16389396..16389877 | 1240..1721 | 100 | <- | Minus |
X | 16389946..16390392 | 793..1239 | 100 | <- | Minus |
X | 16390463..16391175 | 80..792 | 100 | <- | Minus |
X | 16391292..16391354 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:20 Download gff for
BS08823.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16283329..16283360 | 1722..1753 | 100 | <- | Minus |
arm_X | 16283429..16283910 | 1240..1721 | 100 | <- | Minus |
arm_X | 16283979..16284425 | 793..1239 | 100 | <- | Minus |
arm_X | 16284496..16285208 | 80..792 | 100 | <- | Minus |
arm_X | 16285325..16285387 | 17..79 | 100 | | Minus |
BS08823.pep Sequence
Translation from 16 to 1752
> BS08823.pep
MEVEYDDSGWQGRAKGQTNPEETLEDNPQKTIQECLEKFLTPDYIMEPGI
FTQLKRYFQSGGSPEEVISMLSENYKAVAQMANLLAEWLILAGVKVTEVQ
AMVENHLKEMILKSFDPKKADTIFTEEGETPDWLTEMIDHYTWRSLIYRL
AEEYPDCLMLNFTIKLISDAGFQSEITSISTAAQQIEVFSRVLKTSIVKF
LNNPDDVHGAIQECARMVCHGQHTYVYSQVLIQVLSQEQKGGFNMKRLSQ
EIIKYALQNNQNVTPITMALNGSAVYPQACQALTSMLTRNTLNPADITVL
FRNYSGSDPPPIDLIRNPQFLELLVDALFRSGVKINPEHKPKYMFLLAYA
SAVIDQPAKKRPMTERMLNKEELKSTIQAIEKAHTICNVDQGSTELIAEL
QTLYNCIKYPVVGVGVIRWIENVVMEPSYFKLSTDSCPTHLAVLDEVAAV
HPTLQQQILFLLIRLFESKQDELEILVQLEMKKMILDRMVNLLTRGCVVP
VLRYIKQCCAIEDTDISLIRYFVTEVLETITHPYSPEFVQLFLPMVENEE
ITGTMRGEGDNDPVSEFIVHCKAHYTTV*
BS08823.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TH1-PB | 578 | CG9984-PB | 1..578 | 1..578 | 2990 | 100 | Plus |
TH1-PA | 578 | CG9984-PA | 1..578 | 1..578 | 2990 | 100 | Plus |