Clone BS08823 Report

Search the DGRC for BS08823

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptTH1-RA
Protein status:BS08823.pep: full length peptide match
Sequenced Size:1769

Clone Sequence Records

BS08823.3prime Sequence

820 bp (792 high quality bases) assembled on 2006-01-18

> BS08823.3prime
ATGGTCTAGAAAGCTTCTATACAGTCGTGTAATGCGCCTTGCAGTGAACA
ATAAATTCGGACACGGGATCGTTGTCGCCCTCGCCGCGCATTGTACCGGT
GATCTCCTCGTTCTCCACCATCGGCAGGAACAGCTGCACGAACTCCGGCG
AGTAGGGATGTGTGATAGTCTCCAGCACCTCGGTGACAAAGTATCGTATT
AGCGAAATGTCTGTGTCCTCGATGGCGCAGCACTGCTTTATGTATCTGAG
AACGGGTACAACGCAGCCGCGCGTCAGCAGGTTAACCATTCGGTCCAGGA
TCATTTTCTTCATTTCCAATTGAACGAGAATCTCCAGCTCATCCTGCTTG
GACTCAAATAAGCGGATGAGCAGGAAGAGGATCTGCTGCTGCAAGGTGGG
ATGAACGGCGGCCACTTCATCCAGTACCGCCAAGTGCGTGGGACAGCTGT
CTGTGGAGAGCTTGAAATATGAAGGCTCCATAACAACGTTTTCGATCCAC
CGAATGACACCAACTCCCACCACAGGATATTTGATGCAATTATACAGCGT
TTGCAACTCGGCGATTAGCTCGGTGGATCCCTGGTCCACATTACAAATGG
TGTGTGCCTTTTCGATAGCCTGAATGGTGCTCTTTAGCTCCTCCTTGTTT
AGCATGCGCTCAGTCATTGGTCGCTTTTTGGCCGGCTGGTCGATGACCGC
GGACGCGTAGGCTAGCAGAAACATATACTTCGGTTTGTGCTCGGGATTGA
TTTTAACGCCGGAACGAAAGAGCGCGTCTACCAGTAGCTCCAGAAACTGG
GGGTTTCGTATCAAGTCGAT

BS08823.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9984-PA 1737 TH1-RA 934..1737 820..17 4020 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
TH1-RB 1967 CG9984-RB 1018..1822 820..16 4025 100 Minus
TH1-RA 2297 CG9984-RA 1018..1822 820..16 4025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16389396..16389877 49..530 2410 100 Plus
X 23542271 X 16389946..16390235 531..820 1450 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:04:39 has no hits.

BS08823.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:10 Download gff for BS08823.3prime
Subject Subject Range Query Range Percent Splice Strand
TH1-PA 934..1737 17..820 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:31 Download gff for BS08823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9984-PA 934..1737 17..820 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:24 Download gff for BS08823.3prime
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 1018..1824 11..820 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:27:40 Download gff for BS08823.3prime
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 1018..1824 11..820 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:27:40 Download gff for BS08823.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16389946..16390235 531..820 100   Plus
X 16389293..16389327 11..48 92 <- Plus
X 16389396..16389877 49..530 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:24 Download gff for BS08823.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16283326..16283360 11..48 92 <- Plus
arm_X 16283429..16283910 49..530 100 <- Plus
arm_X 16283979..16284268 531..820 100   Plus

BS08823.5prime Sequence

858 bp (857 high quality bases) assembled on 2006-01-18

> BS08823.5prime
GAAGTTATCAGTCGACATGGAAGTGGAATACGACGACTCTGGTTGGCAGG
GCCGCGCCAAAGGACAAACCAATCCGGAGGAAACGCTTGAGGACAATCCG
CAGAAGACGATACAGGAATGCCTGGAGAAGTTCCTCACACCGGACTACAT
CATGGAGCCGGGGATATTTACGCAGCTGAAGCGCTACTTTCAGTCGGGCG
GATCTCCGGAGGAGGTTATATCGATGCTATCCGAGAACTACAAGGCGGTG
GCCCAGATGGCCAACCTGCTTGCGGAATGGCTCATCCTGGCGGGCGTCAA
GGTTACCGAAGTCCAGGCCATGGTGGAGAATCATCTCAAGGAAATGATTC
TTAAGTCCTTCGATCCCAAGAAGGCGGACACCATATTCACGGAGGAGGGT
GAGACGCCCGACTGGCTAACCGAGATGATCGACCACTATACGTGGCGCTC
GCTAATCTACCGACTGGCCGAAGAATATCCCGATTGTCTAATGCTGAACT
TTACAATCAAGTTGATCTCGGACGCGGGCTTCCAGAGCGAGATCACTTCC
ATTTCGACAGCGGCACAGCAGATTGAGGTTTTCTCGCGGGTTCTAAAGAC
CTCGATCGTCAAATTTCTAAACAATCCGGATGATGTGCACGGTGCCATTC
AGGAGTGCGCACGAATGGTCTGCCATGGCCAGCACACTTACGTATACTCC
CAGGTGCTCATCCAGGTCCTCAGCCAGGAGCAGAAGGGTGGGTTCAACAT
GAAGCGGCTCTCTCAGGAAATTATTAAATACGCCCTGCAGAACAATCAAA
ATGTAACGCCTATTACAATGGCCCCTGAATGGTTCGGCAGTCTATCCGCA
AGCATGTC

BS08823.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9984-PA 1737 TH1-RA 1..808 17..824 4040 100 Plus
CG9984-PA 1737 TH1-RA 806..841 823..858 180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
TH1-RB 1967 CG9984-RB 85..925 17..858 4185 99.9 Plus
TH1-RA 2297 CG9984-RA 85..925 17..858 4185 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16390453..16391177 802..78 3580 99.6 Minus
X 23542271 X 16391291..16391354 80..17 320 100 Minus
X 23542271 X 16390328..16390392 858..793 280 98.5 Minus
Blast to na_te.dros performed on 2015-02-11 10:33:06 has no hits.

BS08823.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:11 Download gff for BS08823.5prime
Subject Subject Range Query Range Percent Splice Strand
TH1-PA 1..841 17..858 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:32 Download gff for BS08823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9984-PA 1..841 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:58:10 Download gff for BS08823.5prime
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 78..925 10..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:40 Download gff for BS08823.5prime
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 78..925 10..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:40 Download gff for BS08823.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16390328..16390392 793..858 98 <- Minus
X 16390463..16391175 80..792 100 <- Minus
X 16391292..16391361 10..79 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:58:10 Download gff for BS08823.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16284361..16284425 793..858 98 <- Minus
arm_X 16284496..16285208 80..792 100 <- Minus
arm_X 16285325..16285394 10..79 94   Minus

BS08823.complete Sequence

1769 bp assembled on 2008-08-14

GenBank Submission: FJ636281

> BS08823.complete
GAAGTTATCAGTCGACATGGAAGTGGAATACGACGACTCTGGTTGGCAGG
GCCGCGCCAAAGGACAAACCAATCCGGAGGAAACGCTTGAGGACAATCCG
CAGAAGACGATACAGGAATGCCTGGAGAAGTTCCTCACACCGGACTACAT
CATGGAGCCGGGGATATTTACGCAGCTGAAGCGCTACTTTCAGTCGGGCG
GATCTCCGGAGGAGGTTATATCGATGCTATCCGAGAACTACAAGGCGGTG
GCCCAGATGGCCAACCTGCTTGCGGAATGGCTCATCCTGGCGGGCGTCAA
GGTTACCGAAGTCCAGGCCATGGTGGAGAATCATCTCAAGGAAATGATTC
TTAAGTCCTTCGATCCCAAGAAGGCGGACACCATATTCACGGAGGAGGGT
GAGACGCCCGACTGGCTAACCGAGATGATCGACCACTATACGTGGCGCTC
GCTAATCTACCGACTGGCCGAAGAATATCCCGATTGTCTAATGCTGAACT
TTACAATCAAGTTGATCTCGGACGCGGGCTTCCAGAGCGAGATCACTTCC
ATTTCGACAGCGGCACAGCAGATTGAGGTTTTCTCGCGGGTTCTAAAGAC
CTCGATCGTCAAATTTCTAAACAATCCGGATGATGTGCACGGTGCCATTC
AGGAGTGCGCACGAATGGTCTGCCATGGCCAGCACACTTACGTATACTCC
CAGGTGCTCATCCAGGTCCTCAGCCAGGAGCAGAAGGGTGGGTTCAACAT
GAAGCGGCTCTCTCAGGAAATTATTAAATACGCCCTGCAGAACAATCAAA
ATGTAACGCCTATTACAATGGCCCTGAATGGTTCGGCAGTCTATCCGCAA
GCATGTCAAGCCCTAACTTCCATGCTCACCCGCAATACACTGAATCCCGC
CGATATCACCGTGCTGTTTCGCAACTACTCCGGTTCCGATCCACCGCCCA
TCGACTTGATACGAAACCCCCAGTTTCTGGAGCTACTGGTAGACGCGCTC
TTTCGTTCCGGCGTTAAAATCAATCCCGAGCACAAACCGAAGTATATGTT
TCTGCTAGCCTACGCGTCCGCGGTCATCGACCAGCCGGCCAAAAAGCGAC
CAATGACTGAGCGCATGCTAAACAAGGAGGAGCTAAAGAGCACCATTCAG
GCTATCGAAAAGGCACACACCATTTGTAATGTGGACCAGGGATCCACCGA
GCTAATCGCCGAGTTGCAAACGCTGTATAATTGCATCAAATATCCTGTGG
TGGGAGTTGGTGTCATTCGGTGGATCGAAAACGTTGTTATGGAGCCTTCA
TATTTCAAGCTCTCCACAGACAGCTGTCCCACGCACTTGGCGGTACTGGA
TGAAGTGGCCGCCGTTCATCCCACCTTGCAGCAGCAGATCCTCTTCCTGC
TCATCCGCTTATTTGAGTCCAAGCAGGATGAGCTGGAGATTCTCGTTCAA
TTGGAAATGAAGAAAATGATCCTGGACCGAATGGTTAACCTGCTGACGCG
CGGCTGCGTTGTACCCGTTCTCAGATACATAAAGCAGTGCTGCGCCATCG
AGGACACAGACATTTCGCTAATACGATACTTTGTCACCGAGGTGCTGGAG
ACTATCACACATCCCTACTCGCCGGAGTTCGTGCAGCTGTTCCTGCCGAT
GGTGGAGAACGAGGAGATCACCGGTACAATGCGCGGCGAGGGCGACAACG
ATCCCGTGTCCGAATTTATTGTTCACTGCAAGGCGCATTACACGACTGTA
TAGAAGCTTTCTAGACCAT

BS08823.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
TH1-RB 1737 CG9984-PB 1..1737 17..1753 8685 100 Plus
TH1-RA 1737 CG9984-PA 1..1737 17..1753 8685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
TH1-RB 1967 CG9984-RB 85..1822 17..1754 8690 100 Plus
TH1-RA 2297 CG9984-RA 85..1822 17..1754 8690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16390453..16391177 802..78 3580 99.6 Minus
X 23542271 X 16389396..16389877 1721..1240 2410 100 Minus
X 23542271 X 16389946..16390392 1239..793 2235 100 Minus
X 23542271 X 16391291..16391354 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:22:32 has no hits.

BS08823.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:00 Download gff for BS08823.complete
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 50..1796 10..1759 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:20 Download gff for BS08823.complete
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 85..1821 17..1753 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:24 Download gff for BS08823.complete
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 57..1793 17..1753 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:10 Download gff for BS08823.complete
Subject Subject Range Query Range Percent Splice Strand
TH1-RA 85..1821 17..1753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:10 Download gff for BS08823.complete
Subject Subject Range Query Range Percent Splice Strand
X 16389296..16389327 1722..1753 100 <- Minus
X 16389396..16389877 1240..1721 100 <- Minus
X 16389946..16390392 793..1239 100 <- Minus
X 16390463..16391175 80..792 100 <- Minus
X 16391292..16391354 17..79 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:20 Download gff for BS08823.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16283329..16283360 1722..1753 100 <- Minus
arm_X 16283429..16283910 1240..1721 100 <- Minus
arm_X 16283979..16284425 793..1239 100 <- Minus
arm_X 16284496..16285208 80..792 100 <- Minus
arm_X 16285325..16285387 17..79 100   Minus

BS08823.pep Sequence

Translation from 16 to 1752

> BS08823.pep
MEVEYDDSGWQGRAKGQTNPEETLEDNPQKTIQECLEKFLTPDYIMEPGI
FTQLKRYFQSGGSPEEVISMLSENYKAVAQMANLLAEWLILAGVKVTEVQ
AMVENHLKEMILKSFDPKKADTIFTEEGETPDWLTEMIDHYTWRSLIYRL
AEEYPDCLMLNFTIKLISDAGFQSEITSISTAAQQIEVFSRVLKTSIVKF
LNNPDDVHGAIQECARMVCHGQHTYVYSQVLIQVLSQEQKGGFNMKRLSQ
EIIKYALQNNQNVTPITMALNGSAVYPQACQALTSMLTRNTLNPADITVL
FRNYSGSDPPPIDLIRNPQFLELLVDALFRSGVKINPEHKPKYMFLLAYA
SAVIDQPAKKRPMTERMLNKEELKSTIQAIEKAHTICNVDQGSTELIAEL
QTLYNCIKYPVVGVGVIRWIENVVMEPSYFKLSTDSCPTHLAVLDEVAAV
HPTLQQQILFLLIRLFESKQDELEILVQLEMKKMILDRMVNLLTRGCVVP
VLRYIKQCCAIEDTDISLIRYFVTEVLETITHPYSPEFVQLFLPMVENEE
ITGTMRGEGDNDPVSEFIVHCKAHYTTV*

BS08823.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
TH1-PB 578 CG9984-PB 1..578 1..578 2990 100 Plus
TH1-PA 578 CG9984-PA 1..578 1..578 2990 100 Plus