Clone Sequence Records
BS08824.3prime Sequence
872 bp (794 high quality bases) assembled on 2006-01-18
> BS08824.3prime
ATGGTCTAGAAAGCTTTCAGTCGAAGGCGTAGTACTGGATGCGGCCCGAC
GACCAGGCGATCGTCAGCACGGAGCGATCGTTATCCTCGTAGAGTGGCTG
GAAGCAGATGAAGCTCGGGTGCTCCGCCGCCGTCTCGCCGCTCAGATAGT
AAGCCGCCGAAATCTGCAGATCGAACTTCTGTATGAAGGTGCGGAAGACG
GCGATGCAGTTGGTCGCCTTGAATGTGACTACCAGATAATTGCCATGCGG
ATCCCAAGCAAGCTGCTGGGCGGGACCACCGACAAGCGTGCGATTCGCAT
CAATGCTACAAGCATTTAGATCTGCAATGGGCAGGATTTCCTTCTCATCC
GCCGAAGAGGATAGCAGACTCTGTTGCACGAACTGCAGGCGGTAGAGAAT
CGGTTCGGCACTGCTGACGAAGAGCAGGAAGCGACCGCAGGGCGACCAAC
AGGCTGTTTGGACATAGCCTCCGGGACCGCACACCCATCGCTCGGTGGTC
CATTGCTGGTGGCAGTTCCACACGCGGAACACCCGATCCACGGTGGCTGC
GAACAGCCAGTCATTATCCGGCGACCACTTCAGCAGCGAGCCCGGCGGAC
CCAAACGCTTGAGTGGCTGCATCATTCCGGTGTCCGGCTGCCAGATAATA
ATGGAACGATCTCCTATTGAGGCGGTGGCCAACTGGGTGCCATCCTTGTT
CCACTGCATCGAGGTTATTGGCAGATTGTTTGGGTATTTAAAAATCTCGC
TGGGTGCATTTGTGCGTCCCAAATGCAAAGTGCTGTCCACTTCCCCAGAA
CACAGACCCTGCCGACAACCTATCACGATCTCGGAAGCGCAGAGTGGACG
CCACGCCATGCAGGTGATCTGC
BS08824.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16892-PA | 1401 | CG16892-RA | 623..1401 | 795..17 | 3895 | 100 | Minus |
CG16892-PA | 1401 | CG16892-RA | 546..619 | 872..799 | 370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:13:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16892-RA | 1587 | CG16892-RA | 647..1502 | 872..17 | 4235 | 99.8 | Minus |
CG16892-RB | 1888 | CG16892-RB | 647..1502 | 872..17 | 4235 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9274314..9274690 | 734..358 | 1885 | 100 | Minus |
X | 23542271 | X | 9274927..9275267 | 357..17 | 1705 | 100 | Minus |
X | 23542271 | X | 9274119..9274256 | 872..735 | 645 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-13 14:13:00 has no hits.
BS08824.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:12 Download gff for
BS08824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16892-PA | 546..1401 | 17..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:33 Download gff for
BS08824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16892-PA | 546..1401 | 17..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:02:58 Download gff for
BS08824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16892-RB | 647..1506 | 11..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:58:48 Download gff for
BS08824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16892-RB | 647..1506 | 11..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:58:48 Download gff for
BS08824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9274119..9274256 | 735..872 | 98 | -> | Minus |
X | 9274314..9274690 | 358..734 | 100 | -> | Minus |
X | 9274927..9275271 | 11..357 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:02:58 Download gff for
BS08824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9168152..9168289 | 735..872 | 98 | -> | Minus |
arm_X | 9168347..9168723 | 358..734 | 100 | -> | Minus |
arm_X | 9168960..9169304 | 11..357 | 99 | | Minus |
BS08824.5prime Sequence
834 bp (744 high quality bases) assembled on 2006-01-18
> BS08824.5prime
GAAGTTATCAGTCGACATGGCGGCCCTGAGCAACCTAAAACAGTGTCCGC
CGTTCTCCACGCTGCCGGATCTGGCGCTGCGGCACAATCACATCCCAGAG
CTGGAACGCTATCCGCAGATAAACCTGAACAGCGAACTTCTGGCCAATCC
GGCTGGTCAGCGGTACTACGGCGGACAGAGCTTCGTATCTGTGAATGAGG
GTGTCCTAAAGCGCATAGCTCGCAGCTTCTTTAATGGCGGATTCTGGAAG
ACGCTGGAGGAGGCACGCAGCCCAGAGACCAGGGAGCAGGCGCCGCTTAT
TGCCCAGGCGGGTGATTTAATCGCACAATTTCTGGGCCTGGCCACCGGCC
TGAGGATCCTCCCGCACACCCAGCAGCTTAGTGCAGAGCGTATTGCTCAG
TTCGTGGAGACCAGGGATTGGCTCAACAGCGATGTGCGCTATCTTGCCTG
GAATCAGCACTTCTTTTGCTTAGCCGTAGCCGGTGTAGACGATGTGGTGC
GCATCTACACAAAGAGTTCCAGTGCGACCACTGCCACTGTTTTAAAGAGT
CCATCCCAAACGCAGATCACCTGCATGGCGTGGCGTCCACTCTGCGCTTC
CGAGATCGTGATAGGTTGTCGGCAGGGTCTGTGTTTCTGGGAAGTGGACA
GCACTTTGCATTTGGGACGCACAAATGCACCCAGCGAGATTTTTAAATAC
CCAAACAATCTGCCAATAACCTCGATGCAGTGGAACAAGGATGGCACCCA
GTTGGCCACCGCCTCAATAGGAGATCGTTCCATTATTATCTGGCAGCCGG
ACACCGGAATGATGCAGCCACTCAAGCGTTTGGG
BS08824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16892-PA | 1401 | CG16892-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16892-RA | 1587 | CG16892-RA | 102..919 | 17..834 | 4090 | 100 | Plus |
CG16892-RB | 1888 | CG16892-RB | 102..919 | 17..834 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9273514..9273912 | 17..415 | 1995 | 100 | Plus |
X | 23542271 | X | 9273969..9274256 | 412..699 | 1440 | 100 | Plus |
X | 23542271 | X | 9274314..9274448 | 700..834 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:21:02 has no hits.
BS08824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:13 Download gff for
BS08824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16892-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:35 Download gff for
BS08824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16892-PA | 1..818 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:22:58 Download gff for
BS08824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16892-RB | 102..919 | 17..834 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:30:04 Download gff for
BS08824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16892-RB | 102..919 | 17..834 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:30:04 Download gff for
BS08824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9273514..9273911 | 17..414 | 100 | -> | Plus |
X | 9273972..9274256 | 415..699 | 100 | -> | Plus |
X | 9274314..9274448 | 700..834 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:22:58 Download gff for
BS08824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9168347..9168481 | 700..834 | 100 | | Plus |
arm_X | 9167547..9167944 | 17..414 | 100 | -> | Plus |
arm_X | 9168005..9168289 | 415..699 | 100 | -> | Plus |
BS08824.complete Sequence
1433 bp (1433 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636282
> BS08824.complete
GAAGTTATCAGTCGACATGGCGGCCCTGAGCAACCTAAAACAGTGTCCGC
CGTTCTCCACGCTGCCGGATCTGGCGCTGCGGCACAATCACATCCCAGAG
CTGGAACGCTATCCGCAGATAAACCTGAACAGCGAACTTCTGGCCAATCC
GGCTGGTCAGCGGTACTACGGCGGACAGAGCTTCGTATCTGTGAATGAGG
GTGTCCTAAAGCGCATAGCTCGCAGCTTCTTTAATGGCGGATTCTGGAAG
ACGCTGGAGGAGGCACGCAGCCCAGAGACCAGGGAGCAGGCGCCGCTTAT
TGCCCAGGCGGGTGATTTAATCGCACAATTTCTGGGCCTGGCCACCGGCC
TGAGGATCCTCCCGCACACCCAGCAGCTTAGTGCAGAGCGTATTGCTCAG
TTCGTGGAGACCAGGGATTGGCTCAACAGCGATGTGCGCTATCTTGCCTG
GAATCAGCACTTCTTTTGCTTAGCCGTAGCCGGTGTAGACGATGTGGTGC
GCATCTACACAAAGAGTTCCAGTGCGACCACTGCCACTGTTTTAAAGAGT
CCATCCCAAACGCAGATCACCTGCATGGCGTGGCGTCCACTCTGCGCTTC
CGAGATCGTGATAGGTTGTCGGCAGGGTCTGTGTTTCTGGGAAGTGGACA
GCACTTTGCATTTGGGACGCACAAATGCACCCAGCGAGATTTTTAAATAC
CCAAACAATCTGCCAATAACCTCGATGCAGTGGAACAAGGATGGCACCCA
GTTGGCCACCGCCTCAATAGGAGATCGTTCCATTATTATCTGGCAGCCGG
ACACCGGAATGATGCAGCCACTCAAGCGTTTGGGTCCGCCGGGCTCGCTG
CTGAAGTGGTCGCCGGATAATGACTGGCTGTTCGCAGCCACCGTGGATCG
GGTGTTCCGCGTGTGGAACTGCCACCAGCAATGGACCACCGAGCGATGGG
TGTGCGGTCCCGGAGGCTATGTCCAAACAGCCTGTTGGTCGCCCTGCGGT
CGCTTCCTGCTCTTCGTCAGCAGTGCCGAACCGATTCTCTACCGCCTGCA
GTTCGTGCAACAGAGTCTGCTATCCTCTTCGGCGGATGAGAAGGAAATCC
TGCCCATTGCAGATCTAAATGCTTGTAGCATTGATGCGAATCGCACGCTT
GTCGGTGGTCCCGCCCAGCAGCTTGCTTGGGATCCGCATGGCAATTATCT
GGTAGTCACATTCAAGGCGACCAACTGCATCGCCGTCTTCCGCACCTTCA
TACAGAAGTTCGATCTGCAGATTTCGGCGGCTTACTATCTGAGCGGCGAG
ACGGCGGCGGAGCACCCGAGCTTCATCTGCTTCCAGCCACTCTACGAGGA
TAACGATCGCTCCGTGCTGACGATCGCCTGGTCGTCGGGCCGCATCCAGT
ACTACGCCTTCGACTGAAAGCTTTCTAGACCAT
BS08824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16892-RA | 1401 | CG16892-PA | 1..1401 | 17..1417 | 7005 | 100 | Plus |
CG16892-RB | 1401 | CG16892-PB | 1..1401 | 17..1417 | 7005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16892-RA | 1587 | CG16892-RA | 102..1502 | 17..1417 | 7005 | 100 | Plus |
CG16892-RB | 1888 | CG16892-RB | 102..1502 | 17..1417 | 7005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9273514..9273912 | 17..415 | 1995 | 100 | Plus |
X | 23542271 | X | 9274314..9274690 | 700..1076 | 1885 | 100 | Plus |
X | 23542271 | X | 9274927..9275267 | 1077..1417 | 1705 | 100 | Plus |
X | 23542271 | X | 9273969..9274256 | 412..699 | 1440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:00:33 has no hits.
BS08824.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:58 Download gff for
BS08824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16892-RA | 1..1401 | 17..1417 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:08 Download gff for
BS08824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16892-RA | 98..1502 | 17..1423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:01 Download gff for
BS08824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16892-RB | 102..1501 | 17..1416 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:58 Download gff for
BS08824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16892-RA | 98..1502 | 17..1423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:52 Download gff for
BS08824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16892-RB | 102..1501 | 17..1416 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:52 Download gff for
BS08824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9273972..9274256 | 415..699 | 100 | -> | Plus |
X | 9273514..9273911 | 17..414 | 100 | -> | Plus |
X | 9274314..9274690 | 700..1076 | 100 | -> | Plus |
X | 9274927..9275266 | 1077..1416 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:01 Download gff for
BS08824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9167547..9167944 | 17..414 | 100 | -> | Plus |
arm_X | 9168005..9168289 | 415..699 | 100 | -> | Plus |
arm_X | 9168347..9168723 | 700..1076 | 100 | -> | Plus |
arm_X | 9168960..9169299 | 1077..1416 | 100 | | Plus |
BS08824.pep Sequence
Translation from 16 to 1416
> BS08824.pep
MAALSNLKQCPPFSTLPDLALRHNHIPELERYPQINLNSELLANPAGQRY
YGGQSFVSVNEGVLKRIARSFFNGGFWKTLEEARSPETREQAPLIAQAGD
LIAQFLGLATGLRILPHTQQLSAERIAQFVETRDWLNSDVRYLAWNQHFF
CLAVAGVDDVVRIYTKSSSATTATVLKSPSQTQITCMAWRPLCASEIVIG
CRQGLCFWEVDSTLHLGRTNAPSEIFKYPNNLPITSMQWNKDGTQLATAS
IGDRSIIIWQPDTGMMQPLKRLGPPGSLLKWSPDNDWLFAATVDRVFRVW
NCHQQWTTERWVCGPGGYVQTACWSPCGRFLLFVSSAEPILYRLQFVQQS
LLSSSADEKEILPIADLNACSIDANRTLVGGPAQQLAWDPHGNYLVVTFK
ATNCIAVFRTFIQKFDLQISAAYYLSGETAAEHPSFICFQPLYEDNDRSV
LTIAWSSGRIQYYAFD*
BS08824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16892-PA | 466 | CG16892-PA | 1..466 | 1..466 | 2492 | 100 | Plus |
CG16892-PB | 466 | CG16892-PB | 1..466 | 1..466 | 2492 | 100 | Plus |
CG13137-PB | 440 | CG13137-PB | 79..423 | 124..463 | 290 | 27.6 | Plus |