Clone BS08824 Report

Search the DGRC for BS08824

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG16892-RA
Protein status:BS08824.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08824.3prime Sequence

872 bp (794 high quality bases) assembled on 2006-01-18

> BS08824.3prime
ATGGTCTAGAAAGCTTTCAGTCGAAGGCGTAGTACTGGATGCGGCCCGAC
GACCAGGCGATCGTCAGCACGGAGCGATCGTTATCCTCGTAGAGTGGCTG
GAAGCAGATGAAGCTCGGGTGCTCCGCCGCCGTCTCGCCGCTCAGATAGT
AAGCCGCCGAAATCTGCAGATCGAACTTCTGTATGAAGGTGCGGAAGACG
GCGATGCAGTTGGTCGCCTTGAATGTGACTACCAGATAATTGCCATGCGG
ATCCCAAGCAAGCTGCTGGGCGGGACCACCGACAAGCGTGCGATTCGCAT
CAATGCTACAAGCATTTAGATCTGCAATGGGCAGGATTTCCTTCTCATCC
GCCGAAGAGGATAGCAGACTCTGTTGCACGAACTGCAGGCGGTAGAGAAT
CGGTTCGGCACTGCTGACGAAGAGCAGGAAGCGACCGCAGGGCGACCAAC
AGGCTGTTTGGACATAGCCTCCGGGACCGCACACCCATCGCTCGGTGGTC
CATTGCTGGTGGCAGTTCCACACGCGGAACACCCGATCCACGGTGGCTGC
GAACAGCCAGTCATTATCCGGCGACCACTTCAGCAGCGAGCCCGGCGGAC
CCAAACGCTTGAGTGGCTGCATCATTCCGGTGTCCGGCTGCCAGATAATA
ATGGAACGATCTCCTATTGAGGCGGTGGCCAACTGGGTGCCATCCTTGTT
CCACTGCATCGAGGTTATTGGCAGATTGTTTGGGTATTTAAAAATCTCGC
TGGGTGCATTTGTGCGTCCCAAATGCAAAGTGCTGTCCACTTCCCCAGAA
CACAGACCCTGCCGACAACCTATCACGATCTCGGAAGCGCAGAGTGGACG
CCACGCCATGCAGGTGATCTGC

BS08824.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG16892-PA 1401 CG16892-RA 623..1401 795..17 3895 100 Minus
CG16892-PA 1401 CG16892-RA 546..619 872..799 370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:13:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG16892-RA 1587 CG16892-RA 647..1502 872..17 4235 99.8 Minus
CG16892-RB 1888 CG16892-RB 647..1502 872..17 4235 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9274314..9274690 734..358 1885 100 Minus
X 23542271 X 9274927..9275267 357..17 1705 100 Minus
X 23542271 X 9274119..9274256 872..735 645 97.8 Minus
Blast to na_te.dros performed on 2015-02-13 14:13:00 has no hits.

BS08824.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:12 Download gff for BS08824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16892-PA 546..1401 17..872 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:33 Download gff for BS08824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16892-PA 546..1401 17..872 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:02:58 Download gff for BS08824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16892-RB 647..1506 11..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:58:48 Download gff for BS08824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16892-RB 647..1506 11..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:58:48 Download gff for BS08824.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9274119..9274256 735..872 98 -> Minus
X 9274314..9274690 358..734 100 -> Minus
X 9274927..9275271 11..357 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:02:58 Download gff for BS08824.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9168152..9168289 735..872 98 -> Minus
arm_X 9168347..9168723 358..734 100 -> Minus
arm_X 9168960..9169304 11..357 99   Minus

BS08824.5prime Sequence

834 bp (744 high quality bases) assembled on 2006-01-18

> BS08824.5prime
GAAGTTATCAGTCGACATGGCGGCCCTGAGCAACCTAAAACAGTGTCCGC
CGTTCTCCACGCTGCCGGATCTGGCGCTGCGGCACAATCACATCCCAGAG
CTGGAACGCTATCCGCAGATAAACCTGAACAGCGAACTTCTGGCCAATCC
GGCTGGTCAGCGGTACTACGGCGGACAGAGCTTCGTATCTGTGAATGAGG
GTGTCCTAAAGCGCATAGCTCGCAGCTTCTTTAATGGCGGATTCTGGAAG
ACGCTGGAGGAGGCACGCAGCCCAGAGACCAGGGAGCAGGCGCCGCTTAT
TGCCCAGGCGGGTGATTTAATCGCACAATTTCTGGGCCTGGCCACCGGCC
TGAGGATCCTCCCGCACACCCAGCAGCTTAGTGCAGAGCGTATTGCTCAG
TTCGTGGAGACCAGGGATTGGCTCAACAGCGATGTGCGCTATCTTGCCTG
GAATCAGCACTTCTTTTGCTTAGCCGTAGCCGGTGTAGACGATGTGGTGC
GCATCTACACAAAGAGTTCCAGTGCGACCACTGCCACTGTTTTAAAGAGT
CCATCCCAAACGCAGATCACCTGCATGGCGTGGCGTCCACTCTGCGCTTC
CGAGATCGTGATAGGTTGTCGGCAGGGTCTGTGTTTCTGGGAAGTGGACA
GCACTTTGCATTTGGGACGCACAAATGCACCCAGCGAGATTTTTAAATAC
CCAAACAATCTGCCAATAACCTCGATGCAGTGGAACAAGGATGGCACCCA
GTTGGCCACCGCCTCAATAGGAGATCGTTCCATTATTATCTGGCAGCCGG
ACACCGGAATGATGCAGCCACTCAAGCGTTTGGG

BS08824.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG16892-PA 1401 CG16892-RA 1..818 17..834 4090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG16892-RA 1587 CG16892-RA 102..919 17..834 4090 100 Plus
CG16892-RB 1888 CG16892-RB 102..919 17..834 4090 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9273514..9273912 17..415 1995 100 Plus
X 23542271 X 9273969..9274256 412..699 1440 100 Plus
X 23542271 X 9274314..9274448 700..834 675 100 Plus
Blast to na_te.dros performed on 2015-02-02 09:21:02 has no hits.

BS08824.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:13 Download gff for BS08824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16892-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:35 Download gff for BS08824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16892-PA 1..818 17..834 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:22:58 Download gff for BS08824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16892-RB 102..919 17..834 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:30:04 Download gff for BS08824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16892-RB 102..919 17..834 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:30:04 Download gff for BS08824.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9273514..9273911 17..414 100 -> Plus
X 9273972..9274256 415..699 100 -> Plus
X 9274314..9274448 700..834 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:22:58 Download gff for BS08824.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9168347..9168481 700..834 100   Plus
arm_X 9167547..9167944 17..414 100 -> Plus
arm_X 9168005..9168289 415..699 100 -> Plus

BS08824.complete Sequence

1433 bp (1433 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636282

> BS08824.complete
GAAGTTATCAGTCGACATGGCGGCCCTGAGCAACCTAAAACAGTGTCCGC
CGTTCTCCACGCTGCCGGATCTGGCGCTGCGGCACAATCACATCCCAGAG
CTGGAACGCTATCCGCAGATAAACCTGAACAGCGAACTTCTGGCCAATCC
GGCTGGTCAGCGGTACTACGGCGGACAGAGCTTCGTATCTGTGAATGAGG
GTGTCCTAAAGCGCATAGCTCGCAGCTTCTTTAATGGCGGATTCTGGAAG
ACGCTGGAGGAGGCACGCAGCCCAGAGACCAGGGAGCAGGCGCCGCTTAT
TGCCCAGGCGGGTGATTTAATCGCACAATTTCTGGGCCTGGCCACCGGCC
TGAGGATCCTCCCGCACACCCAGCAGCTTAGTGCAGAGCGTATTGCTCAG
TTCGTGGAGACCAGGGATTGGCTCAACAGCGATGTGCGCTATCTTGCCTG
GAATCAGCACTTCTTTTGCTTAGCCGTAGCCGGTGTAGACGATGTGGTGC
GCATCTACACAAAGAGTTCCAGTGCGACCACTGCCACTGTTTTAAAGAGT
CCATCCCAAACGCAGATCACCTGCATGGCGTGGCGTCCACTCTGCGCTTC
CGAGATCGTGATAGGTTGTCGGCAGGGTCTGTGTTTCTGGGAAGTGGACA
GCACTTTGCATTTGGGACGCACAAATGCACCCAGCGAGATTTTTAAATAC
CCAAACAATCTGCCAATAACCTCGATGCAGTGGAACAAGGATGGCACCCA
GTTGGCCACCGCCTCAATAGGAGATCGTTCCATTATTATCTGGCAGCCGG
ACACCGGAATGATGCAGCCACTCAAGCGTTTGGGTCCGCCGGGCTCGCTG
CTGAAGTGGTCGCCGGATAATGACTGGCTGTTCGCAGCCACCGTGGATCG
GGTGTTCCGCGTGTGGAACTGCCACCAGCAATGGACCACCGAGCGATGGG
TGTGCGGTCCCGGAGGCTATGTCCAAACAGCCTGTTGGTCGCCCTGCGGT
CGCTTCCTGCTCTTCGTCAGCAGTGCCGAACCGATTCTCTACCGCCTGCA
GTTCGTGCAACAGAGTCTGCTATCCTCTTCGGCGGATGAGAAGGAAATCC
TGCCCATTGCAGATCTAAATGCTTGTAGCATTGATGCGAATCGCACGCTT
GTCGGTGGTCCCGCCCAGCAGCTTGCTTGGGATCCGCATGGCAATTATCT
GGTAGTCACATTCAAGGCGACCAACTGCATCGCCGTCTTCCGCACCTTCA
TACAGAAGTTCGATCTGCAGATTTCGGCGGCTTACTATCTGAGCGGCGAG
ACGGCGGCGGAGCACCCGAGCTTCATCTGCTTCCAGCCACTCTACGAGGA
TAACGATCGCTCCGTGCTGACGATCGCCTGGTCGTCGGGCCGCATCCAGT
ACTACGCCTTCGACTGAAAGCTTTCTAGACCAT

BS08824.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG16892-RA 1401 CG16892-PA 1..1401 17..1417 7005 100 Plus
CG16892-RB 1401 CG16892-PB 1..1401 17..1417 7005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG16892-RA 1587 CG16892-RA 102..1502 17..1417 7005 100 Plus
CG16892-RB 1888 CG16892-RB 102..1502 17..1417 7005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9273514..9273912 17..415 1995 100 Plus
X 23542271 X 9274314..9274690 700..1076 1885 100 Plus
X 23542271 X 9274927..9275267 1077..1417 1705 100 Plus
X 23542271 X 9273969..9274256 412..699 1440 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:00:33 has no hits.

BS08824.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:58 Download gff for BS08824.complete
Subject Subject Range Query Range Percent Splice Strand
CG16892-RA 1..1401 17..1417 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:08 Download gff for BS08824.complete
Subject Subject Range Query Range Percent Splice Strand
CG16892-RA 98..1502 17..1423 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:01 Download gff for BS08824.complete
Subject Subject Range Query Range Percent Splice Strand
CG16892-RB 102..1501 17..1416 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:58 Download gff for BS08824.complete
Subject Subject Range Query Range Percent Splice Strand
CG16892-RA 98..1502 17..1423 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:52 Download gff for BS08824.complete
Subject Subject Range Query Range Percent Splice Strand
CG16892-RB 102..1501 17..1416 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:52 Download gff for BS08824.complete
Subject Subject Range Query Range Percent Splice Strand
X 9273972..9274256 415..699 100 -> Plus
X 9273514..9273911 17..414 100 -> Plus
X 9274314..9274690 700..1076 100 -> Plus
X 9274927..9275266 1077..1416 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:01 Download gff for BS08824.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9167547..9167944 17..414 100 -> Plus
arm_X 9168005..9168289 415..699 100 -> Plus
arm_X 9168347..9168723 700..1076 100 -> Plus
arm_X 9168960..9169299 1077..1416 100   Plus

BS08824.pep Sequence

Translation from 16 to 1416

> BS08824.pep
MAALSNLKQCPPFSTLPDLALRHNHIPELERYPQINLNSELLANPAGQRY
YGGQSFVSVNEGVLKRIARSFFNGGFWKTLEEARSPETREQAPLIAQAGD
LIAQFLGLATGLRILPHTQQLSAERIAQFVETRDWLNSDVRYLAWNQHFF
CLAVAGVDDVVRIYTKSSSATTATVLKSPSQTQITCMAWRPLCASEIVIG
CRQGLCFWEVDSTLHLGRTNAPSEIFKYPNNLPITSMQWNKDGTQLATAS
IGDRSIIIWQPDTGMMQPLKRLGPPGSLLKWSPDNDWLFAATVDRVFRVW
NCHQQWTTERWVCGPGGYVQTACWSPCGRFLLFVSSAEPILYRLQFVQQS
LLSSSADEKEILPIADLNACSIDANRTLVGGPAQQLAWDPHGNYLVVTFK
ATNCIAVFRTFIQKFDLQISAAYYLSGETAAEHPSFICFQPLYEDNDRSV
LTIAWSSGRIQYYAFD*

BS08824.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG16892-PA 466 CG16892-PA 1..466 1..466 2492 100 Plus
CG16892-PB 466 CG16892-PB 1..466 1..466 2492 100 Plus
CG13137-PB 440 CG13137-PB 79..423 124..463 290 27.6 Plus