Clone Sequence Records
BS08825.3prime Sequence
940 bp (810 high quality bases) assembled on 2006-01-18
> BS08825.3prime
ATGGTCTAGAAAGCTTTTAAAGTTTAGCTCTCACAGCTTCGAAATTTTCG
CTCCTGTATCTCCGGTACATGCTCCTCCAAAAGTCCATTCTTTCGCCATC
CGGATTGCTGCACATCTTCAGCTCCCGATCGATTAGCAGGCAGTCGAGTT
GGATGGGCTCGCCATTGTGTGGCTTCTTGACTGGTTTCCAAATGGGCGAA
GGTTTTCCATCGCGCGCGAAGTTCGCCCACATTTCACATAGCCGTTCCGT
GACCATCAAGTCATCCCTATTCATCTCGGTCTCGTCACCTGCCATCTGGA
ACAGGTAGCAAATATCATCGGCATGAGCCACTCCACGCAGGTCTTCGTTT
TGGAAGATCTTCTTGTACAGATTACGACCGCCCACATAGTCCAAGCGATA
GAAGTACAGAGGAGATTGCGTTTGGCAGCTAGCGTGAATCTCCACTGCGC
GCTGCAGATCCATGCTGAAATGATAGTCGGAGAACAGGTCCACCAGGTTA
TCCATGTTTTCCTTAGACAGCGCCTGCCCGTTAAAGAAGAAGGCTCGTAT
GTCGGAAGCAGCTTCCTGTGCCTCTGGAGCCTGTGGATCTAGCACCAGAT
TGCGGGGAACCAACCTGGCCAAGTCATCTTCGTAGGCCTCCAGTTTTTGC
TTCGCCTTTACTACAATAGCCAACCCCTCGGCGGAGTTGTAACCCATTAT
CACTGGCATACTGCCGAGGCAGTCTTTTTTGTGCATCAGCTCCATGATGT
CCTGCTCAAGAAAACGATCCGGACTGCTGCTGTCCTCCACTACTGGCTTG
AATGCAAAGGGCAGGTGACGTCGTCGCTCATCGGGGCTTAAGACTTTCAA
TGTGTTAGCCAAAATGGCAGTGGGTGTTGCCTTCTCTGACTGCAGGAAGG
TCAAAAGTGCTTTGCTGTCGCCGCCAAAATCACCACCACC
BS08825.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9858-PA | 1689 | clt-RA | 766..1689 | 940..17 | 4620 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| clt-RA | 1844 | CG9858-RA | 873..1796 | 940..17 | 4620 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21617109..21618032 | 17..940 | 4620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:57:37 has no hits.
BS08825.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:14 Download gff for
BS08825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-PA | 766..1689 | 17..940 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:36 Download gff for
BS08825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9858-PA | 766..1689 | 17..940 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:51:02 Download gff for
BS08825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-RA | 873..1798 | 12..940 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:32:17 Download gff for
BS08825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-RA | 873..1798 | 12..940 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:32:17 Download gff for
BS08825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21617107..21618032 | 12..940 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:51:02 Download gff for
BS08825.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17504612..17505537 | 12..940 | 99 | | Plus |
BS08825.5prime Sequence
931 bp (834 high quality bases) assembled on 2006-01-18
> BS08825.5prime
GAAGTTATCAGTCGACATGCTTCTTCGTCCGTGTGGAAGACTAATCTTTA
CCAGGTTTTGCAGCAGCATGAAGGTGAAAGTGCCAGTGAAACAAGGCGTT
TTGGTGGGCCGGCAAAAGAAGCTGGTCAATGGATTGGAGTACAACAGTTT
CCTGGGTGTTCCCTACGCGGAACCACCAGTGGGAGAGCTTCGTTTCCGCA
GCCCGCGGCCATTGGAGCGCTTTCAAAAGCAGGAGCTGGACTGCAGCAAG
GAGGGCAACGTGTCTTACCAGCGAGATCCGTTTACTTTGGAGGTGGCCGG
CTCCGAGGACTGCCTTTTCCTTAATGTATATGCACCTAAAGTCAAAAGTA
CGCGGACTCCTTTACCCGTGATGGTCTGGATTCATGGTGGAGGCTTCTTC
TTCGGCAACGGCAACAGTGACTTCCACTTTCCCGCCAAGCTCATGGAGCA
GGAGGTCATTGTGGTCACCCTGAATTACCGACTTGGAGCGCTTGGTTTCC
TTAGTCTGCCCGAGGAGGGAATACACGGCAATATGGGGCTTAAGGATCAA
CGTCTGGCCCTCGAATGGGTGCAGGAGAACATAGCCAGCTTCAATGGCGA
TCCGAATAACGTAACGCTCTTCGGCGAGAGTGCGGGCGGTTCTTCAGTAC
ATCTGCACACTTTTGCCCGGCATGCCAAGCGACTATTCCACAAGGCTATC
ATGCAGAGTGGAACAGCGAACATGGAATGGGTTTTCCAGAACGAGGCACC
TGCCAAGACCCGACGACTGGCTGAACTCCTGGGTGGTGGTGATTTTGGCG
GCGACAGCAAAGCACTTTTGACCTTCCTGCAGTCAGAGAAGGCAACACCC
ACTGCCATTTTGGCTAACACATTGAAAGTCTTAAGCCCCGATGAGCGACG
ACGTCACCTGCCTTTTGCATTCAAGCCAGTA
BS08825.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9858-PA | 1689 | clt-RA | 1..915 | 17..931 | 4550 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| clt-RA | 1844 | CG9858-RA | 108..1022 | 17..931 | 4560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21617883..21618390 | 931..424 | 2525 | 99.8 | Minus |
| 2R | 25286936 | 2R | 21618454..21618677 | 423..200 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 21618737..21618864 | 199..72 | 640 | 100 | Minus |
| 2R | 25286936 | 2R | 21618914..21618972 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:32:24 has no hits.
BS08825.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:15 Download gff for
BS08825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-PA | 1..914 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:38 Download gff for
BS08825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9858-PA | 1..914 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:25:03 Download gff for
BS08825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-RA | 103..1021 | 8..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:04 Download gff for
BS08825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-RA | 103..1021 | 8..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:04 Download gff for
BS08825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21617884..21618390 | 424..930 | 99 | <- | Minus |
| 2R | 21618454..21618677 | 200..423 | 100 | <- | Minus |
| 2R | 21618737..21618862 | 74..199 | 100 | <- | Minus |
| 2R | 21618916..21618977 | 8..73 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:25:03 Download gff for
BS08825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17505389..17505895 | 424..930 | 99 | <- | Minus |
| arm_2R | 17505959..17506182 | 200..423 | 100 | <- | Minus |
| arm_2R | 17506242..17506367 | 74..199 | 100 | <- | Minus |
| arm_2R | 17506421..17506482 | 8..73 | 93 | | Minus |
BS08825.complete Sequence
1721 bp assembled on 2007-10-17
GenBank Submission: FJ638817
> BS08825.complete
GAAGTTATCAGTCGACATGCTTCTTCGTCCGTGTGGAAGACTAATCTTTA
CCAGGTTTTGCAGCAGCATGAAGGTGAAAGTGCCAGTGAAACAAGGCGTT
TTGGTGGGCCGGCAAAAGAAGCTGGTCAATGGATTGGAGTACAACAGTTT
CCTGGGTGTTCCCTACGCGGAACCACCAGTGGGAGAGCTTCGTTTCCGCA
GCCCGCGGCCATTGGAGCGCTTTCAAAAGCAGGAGCTGGACTGCAGCAAG
GAGGGCAACGTGTCTTACCAGCGAGATCCGTTTACTTTGGAGGTGGCCGG
CTCCGAGGACTGCCTTTTCCTTAATGTATATGCACCTAAAGTCAAAAGTA
CGCGGACTCCTTTACCCGTGATGGTCTGGATTCATGGTGGAGGCTTCTTC
TTCGGCAACGGCAACAGTGACTTCCACTTTCCCGCCAAGCTCATGGAGCA
GGAGGTCATTGTGGTCACCCTGAATTACCGACTTGGAGCGCTTGGTTTCC
TTAGTCTGCCCGAGGAGGGAATACACGGCAATATGGGGCTTAAGGATCAA
CGTCTGGCCCTCGAATGGGTGCAGGAGAACATAGCCAGCTTCAATGGCGA
TCCGAATAACGTAACGCTCTTCGGCGAGAGTGCGGGCGGTTCTTCAGTAC
ATCTGCACACTTTTGCCCGGCATGCCAAGCGACTATTCCACAAGGCTATC
ATGCAGAGTGGAACAGCGAACATGGAATGGGTTTTCCAGAACGAGGCACC
TGCCAAGACCCGACGACTGGCTGAACTCCTGGGTGGTGGTGATTTTGGCG
GCGACAGCAAAGCACTTTTGACCTTCCTGCAGTCAGAGAAGGCAACACCC
ACTGCCATTTTGGCTAACACATTGAAAGTCTTAAGCCCCGATGAGCGACG
ACGTCACCTGCCCTTTGCATTCAAGCCAGTAGTGGAGGACAGCAGCAGTC
CGGATCGTTTTCTTGAGCAGGACATCATGGAGCTGATGCACAAAAAAGAC
TGCCTCGGCAGTATGCCAGTGATAATGGGTTACAACTCCGCCGAGGGGTT
GGCTATTGTAGTAAAGGCGAAGCAAAAACTGGAGGCCTACGAAGATGACT
TGGCCAGGTTGGTTCCCCGCAATCTGGTGCTAGATCCACAGGCTCCAGAG
GCACAGGAAGCTGCTTCCGACATACGAGCCTTCTTCTTTAACGGGCAGGC
GCTGTCTAAGGAAAACATGGATAACCTGGTGGACCTGTTCTCCGACTATC
ATTTCAGCATGGATCTGCAGCGCGCAGTGGAGATTCACGCTAGCTGCCAA
ACGCAATCTCCTCTGTACTTCTATCGCTTGGACTATGTGGGCGGTCGTAA
TCTGTACAAGAAGATCTTCCAAAACGAAGACCTGCGTGGAGTGGCTCATG
CCGATGATATTTGCTACCTGTTCCAGATGGCAGGTGACGAGACCGAGATG
AATAGGGATGACTTGATGGTCACGGAACGGCTATGTGAAATGTGGGCGAA
CTTCGCGCGCGATGGAAAACCTTCGCCCATTTGGAAACCAGTCAAGAAGC
CACACAATGGCGAGCCCATCCAACTCGACTGCCTGCTAATCGATCGGGAG
CTGAAGATGTGCAGCAATCCGGATGGCGAAAGAATGGACTTTTGGAGGAG
CATGTACCGGAGATACAGGAGCGAAAATTTCGAAGCTGTGAGAGCTAAAC
TTTAAAAGCTTTCTAGACCAT
BS08825.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:20:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| clt-RA | 1689 | CG9858-PA | 1..1689 | 17..1705 | 8445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| clt-RA | 1844 | CG9858-RA | 108..1796 | 17..1705 | 8445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:20:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21617109..21618390 | 1705..424 | 6410 | 100 | Minus |
| 2R | 25286936 | 2R | 21618454..21618677 | 423..200 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 21618737..21618864 | 199..72 | 640 | 100 | Minus |
| 2R | 25286936 | 2R | 21618914..21618972 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:20:36 has no hits.
BS08825.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:09:49 Download gff for
BS08825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-RA | 1..1689 | 17..1705 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:39:43 Download gff for
BS08825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-RA | 83..1778 | 8..1710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:36 Download gff for
BS08825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-RA | 108..1794 | 17..1703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:57 Download gff for
BS08825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-RA | 88..1774 | 17..1703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:16 Download gff for
BS08825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| clt-RA | 108..1794 | 17..1703 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:16 Download gff for
BS08825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21617111..21618390 | 424..1703 | 100 | <- | Minus |
| 2R | 21618454..21618677 | 200..423 | 100 | <- | Minus |
| 2R | 21618737..21618862 | 74..199 | 100 | <- | Minus |
| 2R | 21618916..21618972 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:36 Download gff for
BS08825.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17504616..17505895 | 424..1703 | 100 | <- | Minus |
| arm_2R | 17505959..17506182 | 200..423 | 100 | <- | Minus |
| arm_2R | 17506242..17506367 | 74..199 | 100 | <- | Minus |
| arm_2R | 17506421..17506477 | 17..73 | 100 | | Minus |
BS08825.pep Sequence
Translation from 16 to 1704
> BS08825.pep
MLLRPCGRLIFTRFCSSMKVKVPVKQGVLVGRQKKLVNGLEYNSFLGVPY
AEPPVGELRFRSPRPLERFQKQELDCSKEGNVSYQRDPFTLEVAGSEDCL
FLNVYAPKVKSTRTPLPVMVWIHGGGFFFGNGNSDFHFPAKLMEQEVIVV
TLNYRLGALGFLSLPEEGIHGNMGLKDQRLALEWVQENIASFNGDPNNVT
LFGESAGGSSVHLHTFARHAKRLFHKAIMQSGTANMEWVFQNEAPAKTRR
LAELLGGGDFGGDSKALLTFLQSEKATPTAILANTLKVLSPDERRRHLPF
AFKPVVEDSSSPDRFLEQDIMELMHKKDCLGSMPVIMGYNSAEGLAIVVK
AKQKLEAYEDDLARLVPRNLVLDPQAPEAQEAASDIRAFFFNGQALSKEN
MDNLVDLFSDYHFSMDLQRAVEIHASCQTQSPLYFYRLDYVGGRNLYKKI
FQNEDLRGVAHADDICYLFQMAGDETEMNRDDLMVTERLCEMWANFARDG
KPSPIWKPVKKPHNGEPIQLDCLLIDRELKMCSNPDGERMDFWRSMYRRY
RSENFEAVRAKL*
BS08825.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| clt-PA | 562 | CG9858-PA | 1..562 | 1..562 | 2963 | 100 | Plus |
| alpha-Est2-PB | 566 | CG2505-PB | 26..562 | 13..549 | 766 | 37.2 | Plus |
| alpha-Est2-PA | 566 | CG2505-PA | 26..562 | 13..549 | 766 | 37.2 | Plus |
| CG6018-PA | 566 | CG6018-PA | 34..562 | 21..549 | 747 | 35.8 | Plus |
| alpha-Est7-PA | 572 | CG1112-PA | 33..564 | 20..547 | 747 | 35.3 | Plus |
