Clone Sequence Records
BS08826.3prime Sequence
928 bp (838 high quality bases) assembled on 2006-01-18
> BS08826.3prime
ATGGTCTAGAAAGCTTTCAAGCAGCAATGCAACAACCTTGGTGACCAGTG
TTTGTACTCAAATACGTCTCAAATACGCTTGATGGTGGGTCCGGTGAAGA
AGACGGAGACTTTACGCTTGAACCGCTCCATGGTGGGTTCGTGCTCCTCC
TCGTAGTCGTCGTCATCATCGTCGTCCTGCCGCCGTAGGTGGTGGTGGTG
GTGCTGCTGCTGGTTCTGCTGATGATGATACTGATGGTGGTGGCTCTGGT
TTTGATGGCGGTGGTGCTGCGGTGGCAAATGCAAACGCGGCGGCGGAGGC
GTTCGATGGTGCTGGCCAAAGATGATGGTGCGCGGAAATGGCATGGCCAC
ATCGTCATCGTCATCCTCCCCAGCATCCTGATCGCCAGCACTGCCCCCAT
GACCTTGGCCACCAGGCTCTGGTCCGCCGTCCGACTCGCCTCCTCCTTTG
TCTCCGGCAGCGTGGTCACATTGGTGGTGACCACCTCGCCGCTGCCCAGT
TCATTGTTGGCCCATATCCGAAACTCATAGGTGGTGTTGGGTGCCAGGCG
ATAGACCTCCATTTGGCGCACATTAAAGGCTATGTTGATCGGATCCATCC
TGCTCCAGGCGTGCTCGAAACTGGCATTCGCCGGCGGCGTCTTGTAGGAG
ACGTTGCGGTACTCCGCCGTAAAGCTGCGCACCGGATAGCCACCGGATTG
AGTCTTATTGAAGCGCCAGATGAGGAAACCCAGTATTGTGGATGCCTTGA
AGTATAGCTGCGACACTGGACCCGGAACAGTGCGAACGATGAGCTTGGTT
CGCTGGTGGGCTAGATACTCCACTTCCTCCTCCATTTCGGCTTTCTTCAG
CTGGTCATCCTTGGGGGATACGCTTTTCCCTTGGCCATCATCCTCATCCT
CCAGTGGCCGCGTTTCTTTATCCTGCAG
BS08826.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15312-PB | 1233 | CG15312-RB | 322..1233 | 928..17 | 4510 | 99.7 | Minus |
CG15312-PC | 1233 | CG15312-RC | 322..1233 | 928..17 | 4510 | 99.7 | Minus |
CG15312-PA | 1233 | CG15312-RA | 322..1233 | 928..17 | 4510 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15312-RF | 1905 | CG15312-RF | 870..1781 | 928..17 | 4530 | 99.8 | Minus |
CG15312-RA | 1824 | CG15312-RA | 789..1700 | 928..17 | 4530 | 99.8 | Minus |
CG15312-RC | 3511 | CG15312-RC | 985..1896 | 928..17 | 4530 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:12:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10057244..10057666 | 17..439 | 2115 | 100 | Plus |
X | 23542271 | X | 10060667..10061026 | 569..928 | 1770 | 99.4 | Plus |
X | 23542271 | X | 10060448..10060578 | 439..569 | 655 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 17:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 575..622 | 178..135 | 113 | 77.1 | Minus |
BS08826.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:16 Download gff for
BS08826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15312-PB | 322..1233 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:39 Download gff for
BS08826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15312-PA | 322..1233 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:35:20 Download gff for
BS08826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15312-RC | 985..1896 | 17..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:06:40 Download gff for
BS08826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15312-RC | 985..1896 | 17..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:06:40 Download gff for
BS08826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10060448..10060577 | 439..568 | 100 | <- | Plus |
X | 10060667..10061026 | 569..928 | 99 | | Plus |
X | 10057244..10057665 | 17..438 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:35:20 Download gff for
BS08826.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9951277..9951698 | 17..438 | 100 | <- | Plus |
arm_X | 9954481..9954610 | 439..568 | 100 | <- | Plus |
arm_X | 9954700..9955059 | 569..928 | 99 | | Plus |
BS08826.5prime Sequence
858 bp (809 high quality bases) assembled on 2006-01-18
> BS08826.5prime
GAAGTTATCAGTCGACATGTCGTCCACTTCCAGCTCCGTGCTAACGTTGT
CATCGTTTAATCTATTATTTTTCACCCAAGTGCTCACGGTACTCAGCTCG
ACGATCAAGTACAACGAATACGCGACGGACAAGGGCGGCAATGTGAGCAT
ACCGTGCATAGCCCAGGGAAACATAATGTGGGTGAAAGAGCACGGCAACA
ACAGCACGATAGTTCAGACTGGTCGTGTTCTCGTCCTGCGAAATGTGAGC
ACCACGGATGCGGGAATCTACGTATGCTTTGCGTCAGTGCCACGCCCATC
GACAACAGCAACATCAGCAACTACCTCACCGCAAAATCTGCAGGATAAAG
AAACGCGGCCACTGGAGGATGAGGATGATGGCCAAGGGGAAAGCGTATCC
CCCAAGGATGACCAGCTGAAGGAAGCCGAAATGGAGGAGGAAGTGGAGTA
TCTAGCCCACCAGCGAACCAAGCTCATCGTTCGCACTGTTCCGGGTCCAG
TGTCGCAGCTATACTTCAAGGCATCCACAATACTGGGTTTCCTCATCTGG
CGCTTCAATAAGACTCAATCCGGTGGCTATCCGGTGCGCAGCTTTACGGC
GGAGTACCGCAACGTCTCCTACAAGACGCCGCCGGCGAATGCCAGTTTCG
AGCACGCCTGGAGCAGGATGGATCCGATCAACATAGCCTTTAATGTGCGC
CAAATGGAGGTCTATCGCCTGGCACCCAACACCACCTATGAGTTTCGGAT
ATGGGCCAACAATGAACTGGGCAGCGGCGAGGTGGTCACCACCAATGTGA
CCACGCTGCCGGAGACAAAGGAGGAGGCGAGTCGGACGGCGGACCAGAGC
CTGGTGGC
BS08826.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15312-PB | 1233 | CG15312-RB | 1..842 | 17..858 | 4210 | 100 | Plus |
CG15312-PC | 1233 | CG15312-RC | 1..842 | 17..858 | 4210 | 100 | Plus |
CG15312-PA | 1233 | CG15312-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15312-RF | 1905 | CG15312-RF | 548..1390 | 16..858 | 4215 | 100 | Plus |
CG15312-RA | 1824 | CG15312-RA | 467..1309 | 16..858 | 4215 | 100 | Plus |
CG15312-RC | 3511 | CG15312-RC | 663..1505 | 16..858 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10060667..10061148 | 697..216 | 2410 | 100 | Minus |
X | 23542271 | X | 10061212..10061350 | 217..79 | 695 | 100 | Minus |
X | 23542271 | X | 10060448..10060578 | 827..697 | 655 | 100 | Minus |
X | 23542271 | X | 10070142..10070206 | 80..16 | 325 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 02:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6878..6927 | 297..345 | 121 | 74 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1563..1602 | 297..336 | 110 | 75 | Plus |
BS08826.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:17 Download gff for
BS08826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15312-PB | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:40 Download gff for
BS08826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15312-PA | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:17:17 Download gff for
BS08826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15312-RC | 663..1505 | 16..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:27:36 Download gff for
BS08826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15312-RC | 663..1505 | 16..858 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:27:36 Download gff for
BS08826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10060667..10061146 | 218..697 | 100 | <- | Minus |
X | 10061212..10061348 | 81..217 | 100 | <- | Minus |
X | 10070142..10070206 | 16..80 | 100 | | Minus |
X | 10057635..10057665 | 828..858 | 100 | <- | Minus |
X | 10060448..10060577 | 698..827 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:17:17 Download gff for
BS08826.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9951668..9951698 | 828..858 | 100 | <- | Minus |
arm_X | 9954481..9954610 | 698..827 | 100 | <- | Minus |
arm_X | 9954700..9955179 | 218..697 | 100 | <- | Minus |
arm_X | 9955245..9955381 | 81..217 | 100 | <- | Minus |
arm_X | 9964175..9964239 | 16..80 | 100 | | Minus |
BS08826.complete Sequence
1265 bp (1265 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636283
> BS08826.complete
GAAGTTATCAGTCGACATGTCGTCCACTTCCAGCTCCGTGCTAACGTTGT
CATCGTTTAATCTATTATTTTTCACCCAAGTGCTCACGGTACTCAGCTCG
ACGATCAAGTACAACGAATACGCGACGGACAAGGGCGGCAATGTGAGCAT
ACCGTGCATAGCCCAGGGAAACATAATGTGGGTGAAAGAGCACGGCAACA
ACAGCACGATAGTTCAGACTGGTCGTGTTCTCGTCCTGCGAAATGTGAGC
ACCACGGATGCGGGAATCTACGTATGCTTTGCGTCAGTGCCACGCCCATC
GACAACAGCAACATCAGCAACTACCTCACCGCAAAATCTGCAGGATAAAG
AAACGCGGCCACTGGAGGATGAGGATGATGGCCAAGGGGAAAGCGTATCC
CCCAAGGATGACCAGCTGAAGGAAGCCGAAATGGAGGAGGAAGTGGAGTA
TCTAGCCCACCAGCGAACCAAGCTCATCGTTCGCACTGTTCCGGGTCCAG
TGTCGCAGCTATACTTCAAGGCATCCACAATACTGGGTTTCCTCATCTGG
CGCTTCAATAAGACTCAATCCGGTGGCTATCCGGTGCGCAGCTTTACGGC
GGAGTACCGCAACGTCTCCTACAAGACGCCGCCGGCGAATGCCAGTTTCG
AGCACGCCTGGAGCAGGATGGATCCGATCAACATAGCCTTTAATGTGCGC
CAAATGGAGGTCTATCGCCTGGCACCCAACACCACCTATGAGTTTCGGAT
ATGGGCCAACAATGAACTGGGCAGCGGCGAGGTGGTCACCACCAATGTGA
CCACGCTGCCGGAGACAAAGGAGGAGGCGAGTCGGACGGCGGACCAGAGC
CTGGTGGCCAAGGTCATGGGGGCAGTGCTGGCGATCAGGATGCTGGGGAG
GATGACGATGACGATGTGGCCATGCCATTTCCGCGCACCATCATCTTTGG
CCAGCACCATCGAACGCCTCCGCCGCCGCGTTTGCATTTGCCACCGCAGC
ACCACCGCCATCAAAACCAGAGCCACCACCATCAGTATCATCATCAGCAG
AACCAGCAGCAGCACCACCACCACCACCTACGGCGGCAGGACGACGATGA
TGACGACGACTACGAGGAGGAGCACGAACCCACCATGGAGCGGTTCAAGC
GTAAAGTCTCCGTCTTCTTCACCGGACCCACCATCAAGCGTATTTGAGAC
GTATTTGAGTACAAACACTGGTCACCAAGGTTGTTGCATTGCTGCTTGAA
AGCTTTCTAGACCAT
BS08826.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:26:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15312-RF | 1233 | CG15312-PF | 1..1233 | 17..1249 | 6165 | 100 | Plus |
CG15312-RA | 1233 | CG15312-PA | 1..1233 | 17..1249 | 6165 | 100 | Plus |
CG15312-RC | 1233 | CG15312-PC | 1..1233 | 17..1249 | 6165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15312-RF | 1905 | CG15312-RF | 548..1781 | 16..1249 | 6170 | 100 | Plus |
CG15312-RA | 1824 | CG15312-RA | 467..1700 | 16..1249 | 6170 | 100 | Plus |
CG15312-RC | 3511 | CG15312-RC | 663..1896 | 16..1249 | 6170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10060667..10061148 | 697..216 | 2410 | 100 | Minus |
X | 23542271 | X | 10057244..10057666 | 1249..827 | 2115 | 100 | Minus |
X | 23542271 | X | 10061212..10061350 | 217..79 | 695 | 100 | Minus |
X | 23542271 | X | 10060448..10060578 | 827..697 | 655 | 100 | Minus |
X | 23542271 | X | 10070142..10070206 | 80..16 | 325 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6878..6927 | 297..345 | 121 | 74 | Plus |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 575..622 | 1088..1131 | 113 | 77.1 | Plus |
BS08826.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:59 Download gff for
BS08826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15312-RA | 1..1233 | 17..1249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:26 Download gff for
BS08826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15312-RA | 466..1697 | 17..1248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:04 Download gff for
BS08826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15312-RC | 664..1895 | 17..1248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:59 Download gff for
BS08826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15312-RA | 465..1698 | 16..1249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:25 Download gff for
BS08826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15312-RC | 664..1895 | 17..1248 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:25 Download gff for
BS08826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10057245..10057665 | 828..1248 | 100 | <- | Minus |
X | 10060448..10060577 | 698..827 | 100 | <- | Minus |
X | 10060667..10061146 | 218..697 | 100 | <- | Minus |
X | 10061212..10061348 | 81..217 | 100 | <- | Minus |
X | 10070142..10070205 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:04 Download gff for
BS08826.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9951278..9951698 | 828..1248 | 100 | <- | Minus |
arm_X | 9954481..9954610 | 698..827 | 100 | <- | Minus |
arm_X | 9954700..9955179 | 218..697 | 100 | <- | Minus |
arm_X | 9955245..9955381 | 81..217 | 100 | <- | Minus |
arm_X | 9964175..9964238 | 17..80 | 100 | | Minus |
BS08826.pep Sequence
Translation from 16 to 1248
> BS08826.pep
MSSTSSSVLTLSSFNLLFFTQVLTVLSSTIKYNEYATDKGGNVSIPCIAQ
GNIMWVKEHGNNSTIVQTGRVLVLRNVSTTDAGIYVCFASVPRPSTTATS
ATTSPQNLQDKETRPLEDEDDGQGESVSPKDDQLKEAEMEEEVEYLAHQR
TKLIVRTVPGPVSQLYFKASTILGFLIWRFNKTQSGGYPVRSFTAEYRNV
SYKTPPANASFEHAWSRMDPINIAFNVRQMEVYRLAPNTTYEFRIWANNE
LGSGEVVTTNVTTLPETKEEASRTADQSLVAKVMGAVLAIRMLGRMTMTM
WPCHFRAPSSLASTIERLRRRVCICHRSTTAIKTRATTISIIISRTSSST
TTTTYGGRTTMMTTTTRRSTNPPWSGSSVKSPSSSPDPPSSVFETYLSTN
TGHQGCCIAA*
BS08826.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15312-PF | 410 | CG15312-PF | 1..410 | 1..410 | 2114 | 100 | Plus |
CG15312-PA | 410 | CG15312-PA | 1..410 | 1..410 | 2114 | 100 | Plus |
CG15312-PC | 410 | CG15312-PC | 1..410 | 1..410 | 2114 | 100 | Plus |
CG15312-PB | 410 | CG15312-PB | 1..410 | 1..410 | 2114 | 100 | Plus |
CG15312-PE | 414 | CG15312-PE | 1..270 | 1..270 | 1394 | 100 | Plus |