Clone BS08826 Report

Search the DGRC for BS08826

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG15312-RA
Protein status:BS08826.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08826.3prime Sequence

928 bp (838 high quality bases) assembled on 2006-01-18

> BS08826.3prime
ATGGTCTAGAAAGCTTTCAAGCAGCAATGCAACAACCTTGGTGACCAGTG
TTTGTACTCAAATACGTCTCAAATACGCTTGATGGTGGGTCCGGTGAAGA
AGACGGAGACTTTACGCTTGAACCGCTCCATGGTGGGTTCGTGCTCCTCC
TCGTAGTCGTCGTCATCATCGTCGTCCTGCCGCCGTAGGTGGTGGTGGTG
GTGCTGCTGCTGGTTCTGCTGATGATGATACTGATGGTGGTGGCTCTGGT
TTTGATGGCGGTGGTGCTGCGGTGGCAAATGCAAACGCGGCGGCGGAGGC
GTTCGATGGTGCTGGCCAAAGATGATGGTGCGCGGAAATGGCATGGCCAC
ATCGTCATCGTCATCCTCCCCAGCATCCTGATCGCCAGCACTGCCCCCAT
GACCTTGGCCACCAGGCTCTGGTCCGCCGTCCGACTCGCCTCCTCCTTTG
TCTCCGGCAGCGTGGTCACATTGGTGGTGACCACCTCGCCGCTGCCCAGT
TCATTGTTGGCCCATATCCGAAACTCATAGGTGGTGTTGGGTGCCAGGCG
ATAGACCTCCATTTGGCGCACATTAAAGGCTATGTTGATCGGATCCATCC
TGCTCCAGGCGTGCTCGAAACTGGCATTCGCCGGCGGCGTCTTGTAGGAG
ACGTTGCGGTACTCCGCCGTAAAGCTGCGCACCGGATAGCCACCGGATTG
AGTCTTATTGAAGCGCCAGATGAGGAAACCCAGTATTGTGGATGCCTTGA
AGTATAGCTGCGACACTGGACCCGGAACAGTGCGAACGATGAGCTTGGTT
CGCTGGTGGGCTAGATACTCCACTTCCTCCTCCATTTCGGCTTTCTTCAG
CTGGTCATCCTTGGGGGATACGCTTTTCCCTTGGCCATCATCCTCATCCT
CCAGTGGCCGCGTTTCTTTATCCTGCAG

BS08826.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG15312-PB 1233 CG15312-RB 322..1233 928..17 4510 99.7 Minus
CG15312-PC 1233 CG15312-RC 322..1233 928..17 4510 99.7 Minus
CG15312-PA 1233 CG15312-RA 322..1233 928..17 4510 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG15312-RF 1905 CG15312-RF 870..1781 928..17 4530 99.8 Minus
CG15312-RA 1824 CG15312-RA 789..1700 928..17 4530 99.8 Minus
CG15312-RC 3511 CG15312-RC 985..1896 928..17 4530 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10057244..10057666 17..439 2115 100 Plus
X 23542271 X 10060667..10061026 569..928 1770 99.4 Plus
X 23542271 X 10060448..10060578 439..569 655 100 Plus
Blast to na_te.dros performed 2015-02-02 17:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 575..622 178..135 113 77.1 Minus

BS08826.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:16 Download gff for BS08826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15312-PB 322..1233 17..928 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:39 Download gff for BS08826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15312-PA 322..1233 17..928 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:35:20 Download gff for BS08826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15312-RC 985..1896 17..928 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:06:40 Download gff for BS08826.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15312-RC 985..1896 17..928 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:06:40 Download gff for BS08826.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10060448..10060577 439..568 100 <- Plus
X 10060667..10061026 569..928 99   Plus
X 10057244..10057665 17..438 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:35:20 Download gff for BS08826.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9951277..9951698 17..438 100 <- Plus
arm_X 9954481..9954610 439..568 100 <- Plus
arm_X 9954700..9955059 569..928 99   Plus

BS08826.5prime Sequence

858 bp (809 high quality bases) assembled on 2006-01-18

> BS08826.5prime
GAAGTTATCAGTCGACATGTCGTCCACTTCCAGCTCCGTGCTAACGTTGT
CATCGTTTAATCTATTATTTTTCACCCAAGTGCTCACGGTACTCAGCTCG
ACGATCAAGTACAACGAATACGCGACGGACAAGGGCGGCAATGTGAGCAT
ACCGTGCATAGCCCAGGGAAACATAATGTGGGTGAAAGAGCACGGCAACA
ACAGCACGATAGTTCAGACTGGTCGTGTTCTCGTCCTGCGAAATGTGAGC
ACCACGGATGCGGGAATCTACGTATGCTTTGCGTCAGTGCCACGCCCATC
GACAACAGCAACATCAGCAACTACCTCACCGCAAAATCTGCAGGATAAAG
AAACGCGGCCACTGGAGGATGAGGATGATGGCCAAGGGGAAAGCGTATCC
CCCAAGGATGACCAGCTGAAGGAAGCCGAAATGGAGGAGGAAGTGGAGTA
TCTAGCCCACCAGCGAACCAAGCTCATCGTTCGCACTGTTCCGGGTCCAG
TGTCGCAGCTATACTTCAAGGCATCCACAATACTGGGTTTCCTCATCTGG
CGCTTCAATAAGACTCAATCCGGTGGCTATCCGGTGCGCAGCTTTACGGC
GGAGTACCGCAACGTCTCCTACAAGACGCCGCCGGCGAATGCCAGTTTCG
AGCACGCCTGGAGCAGGATGGATCCGATCAACATAGCCTTTAATGTGCGC
CAAATGGAGGTCTATCGCCTGGCACCCAACACCACCTATGAGTTTCGGAT
ATGGGCCAACAATGAACTGGGCAGCGGCGAGGTGGTCACCACCAATGTGA
CCACGCTGCCGGAGACAAAGGAGGAGGCGAGTCGGACGGCGGACCAGAGC
CTGGTGGC

BS08826.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15312-PB 1233 CG15312-RB 1..842 17..858 4210 100 Plus
CG15312-PC 1233 CG15312-RC 1..842 17..858 4210 100 Plus
CG15312-PA 1233 CG15312-RA 1..842 17..858 4210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG15312-RF 1905 CG15312-RF 548..1390 16..858 4215 100 Plus
CG15312-RA 1824 CG15312-RA 467..1309 16..858 4215 100 Plus
CG15312-RC 3511 CG15312-RC 663..1505 16..858 4215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10060667..10061148 697..216 2410 100 Minus
X 23542271 X 10061212..10061350 217..79 695 100 Minus
X 23542271 X 10060448..10060578 827..697 655 100 Minus
X 23542271 X 10070142..10070206 80..16 325 100 Minus
Blast to na_te.dros performed 2015-02-13 02:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6878..6927 297..345 121 74 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1563..1602 297..336 110 75 Plus

BS08826.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:17 Download gff for BS08826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15312-PB 1..842 17..858 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:40 Download gff for BS08826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15312-PA 1..842 17..858 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:17:17 Download gff for BS08826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15312-RC 663..1505 16..858 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:27:36 Download gff for BS08826.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15312-RC 663..1505 16..858 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:27:36 Download gff for BS08826.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10060667..10061146 218..697 100 <- Minus
X 10061212..10061348 81..217 100 <- Minus
X 10070142..10070206 16..80 100   Minus
X 10057635..10057665 828..858 100 <- Minus
X 10060448..10060577 698..827 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:17:17 Download gff for BS08826.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9951668..9951698 828..858 100 <- Minus
arm_X 9954481..9954610 698..827 100 <- Minus
arm_X 9954700..9955179 218..697 100 <- Minus
arm_X 9955245..9955381 81..217 100 <- Minus
arm_X 9964175..9964239 16..80 100   Minus

BS08826.complete Sequence

1265 bp (1265 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636283

> BS08826.complete
GAAGTTATCAGTCGACATGTCGTCCACTTCCAGCTCCGTGCTAACGTTGT
CATCGTTTAATCTATTATTTTTCACCCAAGTGCTCACGGTACTCAGCTCG
ACGATCAAGTACAACGAATACGCGACGGACAAGGGCGGCAATGTGAGCAT
ACCGTGCATAGCCCAGGGAAACATAATGTGGGTGAAAGAGCACGGCAACA
ACAGCACGATAGTTCAGACTGGTCGTGTTCTCGTCCTGCGAAATGTGAGC
ACCACGGATGCGGGAATCTACGTATGCTTTGCGTCAGTGCCACGCCCATC
GACAACAGCAACATCAGCAACTACCTCACCGCAAAATCTGCAGGATAAAG
AAACGCGGCCACTGGAGGATGAGGATGATGGCCAAGGGGAAAGCGTATCC
CCCAAGGATGACCAGCTGAAGGAAGCCGAAATGGAGGAGGAAGTGGAGTA
TCTAGCCCACCAGCGAACCAAGCTCATCGTTCGCACTGTTCCGGGTCCAG
TGTCGCAGCTATACTTCAAGGCATCCACAATACTGGGTTTCCTCATCTGG
CGCTTCAATAAGACTCAATCCGGTGGCTATCCGGTGCGCAGCTTTACGGC
GGAGTACCGCAACGTCTCCTACAAGACGCCGCCGGCGAATGCCAGTTTCG
AGCACGCCTGGAGCAGGATGGATCCGATCAACATAGCCTTTAATGTGCGC
CAAATGGAGGTCTATCGCCTGGCACCCAACACCACCTATGAGTTTCGGAT
ATGGGCCAACAATGAACTGGGCAGCGGCGAGGTGGTCACCACCAATGTGA
CCACGCTGCCGGAGACAAAGGAGGAGGCGAGTCGGACGGCGGACCAGAGC
CTGGTGGCCAAGGTCATGGGGGCAGTGCTGGCGATCAGGATGCTGGGGAG
GATGACGATGACGATGTGGCCATGCCATTTCCGCGCACCATCATCTTTGG
CCAGCACCATCGAACGCCTCCGCCGCCGCGTTTGCATTTGCCACCGCAGC
ACCACCGCCATCAAAACCAGAGCCACCACCATCAGTATCATCATCAGCAG
AACCAGCAGCAGCACCACCACCACCACCTACGGCGGCAGGACGACGATGA
TGACGACGACTACGAGGAGGAGCACGAACCCACCATGGAGCGGTTCAAGC
GTAAAGTCTCCGTCTTCTTCACCGGACCCACCATCAAGCGTATTTGAGAC
GTATTTGAGTACAAACACTGGTCACCAAGGTTGTTGCATTGCTGCTTGAA
AGCTTTCTAGACCAT

BS08826.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG15312-RF 1233 CG15312-PF 1..1233 17..1249 6165 100 Plus
CG15312-RA 1233 CG15312-PA 1..1233 17..1249 6165 100 Plus
CG15312-RC 1233 CG15312-PC 1..1233 17..1249 6165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG15312-RF 1905 CG15312-RF 548..1781 16..1249 6170 100 Plus
CG15312-RA 1824 CG15312-RA 467..1700 16..1249 6170 100 Plus
CG15312-RC 3511 CG15312-RC 663..1896 16..1249 6170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10060667..10061148 697..216 2410 100 Minus
X 23542271 X 10057244..10057666 1249..827 2115 100 Minus
X 23542271 X 10061212..10061350 217..79 695 100 Minus
X 23542271 X 10060448..10060578 827..697 655 100 Minus
X 23542271 X 10070142..10070206 80..16 325 100 Minus
Blast to na_te.dros performed 2014-11-28 05:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6878..6927 297..345 121 74 Plus
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 575..622 1088..1131 113 77.1 Plus

BS08826.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:00:59 Download gff for BS08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG15312-RA 1..1233 17..1249 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:42:26 Download gff for BS08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG15312-RA 466..1697 17..1248 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:04 Download gff for BS08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG15312-RC 664..1895 17..1248 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:00:59 Download gff for BS08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG15312-RA 465..1698 16..1249 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:11:25 Download gff for BS08826.complete
Subject Subject Range Query Range Percent Splice Strand
CG15312-RC 664..1895 17..1248 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:11:25 Download gff for BS08826.complete
Subject Subject Range Query Range Percent Splice Strand
X 10057245..10057665 828..1248 100 <- Minus
X 10060448..10060577 698..827 100 <- Minus
X 10060667..10061146 218..697 100 <- Minus
X 10061212..10061348 81..217 100 <- Minus
X 10070142..10070205 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:04 Download gff for BS08826.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9951278..9951698 828..1248 100 <- Minus
arm_X 9954481..9954610 698..827 100 <- Minus
arm_X 9954700..9955179 218..697 100 <- Minus
arm_X 9955245..9955381 81..217 100 <- Minus
arm_X 9964175..9964238 17..80 100   Minus

BS08826.pep Sequence

Translation from 16 to 1248

> BS08826.pep
MSSTSSSVLTLSSFNLLFFTQVLTVLSSTIKYNEYATDKGGNVSIPCIAQ
GNIMWVKEHGNNSTIVQTGRVLVLRNVSTTDAGIYVCFASVPRPSTTATS
ATTSPQNLQDKETRPLEDEDDGQGESVSPKDDQLKEAEMEEEVEYLAHQR
TKLIVRTVPGPVSQLYFKASTILGFLIWRFNKTQSGGYPVRSFTAEYRNV
SYKTPPANASFEHAWSRMDPINIAFNVRQMEVYRLAPNTTYEFRIWANNE
LGSGEVVTTNVTTLPETKEEASRTADQSLVAKVMGAVLAIRMLGRMTMTM
WPCHFRAPSSLASTIERLRRRVCICHRSTTAIKTRATTISIIISRTSSST
TTTTYGGRTTMMTTTTRRSTNPPWSGSSVKSPSSSPDPPSSVFETYLSTN
TGHQGCCIAA*

BS08826.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG15312-PF 410 CG15312-PF 1..410 1..410 2114 100 Plus
CG15312-PA 410 CG15312-PA 1..410 1..410 2114 100 Plus
CG15312-PC 410 CG15312-PC 1..410 1..410 2114 100 Plus
CG15312-PB 410 CG15312-PB 1..410 1..410 2114 100 Plus
CG15312-PE 414 CG15312-PE 1..270 1..270 1394 100 Plus