Clone BS08828 Report

Search the DGRC for BS08828

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG32428-RA
Protein status:BS08828.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08828.3prime Sequence

618 bp (617 high quality bases) assembled on 2006-01-18

> BS08828.3prime
ATGGTCTAGAAAGCTTCTAAATCATGTGCGACATCATGCAACGACTCACA
TCACGGTTGGCGCGATGCAAATGACCTTGATAATGCTGATGAATGCGCTG
ATATTGATGTGGCTGCTGTGGATGTTGCTGTTGCTCTTGATGTTGCTGCT
GCTGCGCTGGAAAACTCGTCTCCGATTCCATCATCATCATGCCGCCGGTG
GCCTGCATCTCGTAATCCATCAAAGAGGCCTGCGTTCCAATTATTTGTGT
GGCAGGCAAGGAAAAGAAATCATTGCAGTACTGGGCGGCCAAGTCAGACT
CGTCGTAGCGACATCTCTTGGTGTACACCGGTTGGTCCGTGTCCAAATCC
CCGACAGGATTGTGACCGGGATTCAGGCGCTTCTTGCAGCGCAGGACTTC
CGGAGGCAGGACGACCGGCATCGGTTGTGCCGCGAGGTTATTGCCATCAT
TGTTGTTGTTGTTGTTGTTGGCGTCGGTCATGAAGGTGACGGCGCGTGGA
TTGAACGGATCCATCGAAGGACGCAGCGCTCCAGTTTCGAAAGTGGCGGC
CGCCGACGACGACGGATCACCATGTGCCCAGCACTCGAAGTTCGTCAAAA
CCATGTCGACTGATAACT

BS08828.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-PA 588 CG32428-RA 1..588 604..17 2940 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-RB 1804 CG32428-RB 345..932 604..17 2940 100 Minus
CG32428-RA 1213 CG32428-RA 399..986 604..17 2940 100 Minus
CG32428-RC 1238 CG32428-RC 399..927 604..76 2645 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20472641..20472974 271..604 1670 100 Plus
3L 28110227 3L 20470895..20471149 17..271 1275 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:03:44 has no hits.

BS08828.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:18 Download gff for BS08828.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-PA 1..588 17..604 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:42 Download gff for BS08828.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-PA 1..588 17..604 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:55:49 Download gff for BS08828.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 395..994 9..608 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:45 Download gff for BS08828.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 395..994 9..608 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:45 Download gff for BS08828.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20470887..20471148 9..270 98 <- Plus
3L 20472641..20472976 271..608 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:55:49 Download gff for BS08828.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20463987..20464248 9..270 98 <- Plus
arm_3L 20465741..20466076 271..608 99   Plus

BS08828.5prime Sequence

618 bp (617 high quality bases) assembled on 2006-01-18

> BS08828.5prime
GAAGTTATCAGTCGACATGGTTTTGACGAACTTCGAGTGCTGGGCACATG
GTGATCCGTCGTCGTCGGCGGCCGCCACTTTCGAAACTGGAGCGCTGCGT
CCTTCGATGGATCCGTTCAATCCACGCGCCGTCACCTTCATGACCGACGC
CAACAACAACAACAACAACAATGATGGCAATAACCTCGCGGCACAACCGA
TGCCGGTCGTCCTGCCTCCGGAAGTCCTGCGCTGCAAGAAGCGCCTGAAT
CCCGGTCACAATCCTGTCGGGGATTTGGACACGGACCAACCGGTGTACAC
CAAGAGATGTCGCTACGACGAGTCTGACTTGGCCGCCCAGTACTGCAATG
ATTTCTTTTCCTTGCCTGCCACACAAATAATTGGAACGCAGGCCTCTTTG
ATGGATTACGAGATGCAGGCCACCGGCGGCATGATGATGATGGAATCGGA
GACGAGTTTTCCAGCGCAGCAGCAGCAACATCAAGAGCAACAGCAACATC
CACAGCAGCCACATCAATATCAGCGCATTCATCAGCATTATCAAGGTCAT
TTGCATCGCGCCAACCGTGATGTGAGTCGTTGCATGATGTCGCACATGAT
TTAGAAGCTTTCTAGACC

BS08828.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-PA 588 CG32428-RA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:09:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-RB 1804 CG32428-RB 345..932 17..604 2940 100 Plus
CG32428-RA 1213 CG32428-RA 399..986 17..604 2940 100 Plus
CG32428-RC 1238 CG32428-RC 399..927 17..545 2645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20472641..20472974 350..17 1670 100 Minus
3L 28110227 3L 20470895..20471149 604..350 1275 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:09:29 has no hits.

BS08828.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:19 Download gff for BS08828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-PA 1..588 17..604 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:43 Download gff for BS08828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-PA 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:36 Download gff for BS08828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 395..994 13..612 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:11 Download gff for BS08828.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 395..994 13..612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:11 Download gff for BS08828.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20472641..20472976 13..350 99   Minus
3L 20470887..20471148 351..612 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:36 Download gff for BS08828.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20463987..20464248 351..612 98 <- Minus
arm_3L 20465741..20466076 13..350 99   Minus

BS08828.complete Sequence

620 bp (620 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636284

> BS08828.complete
GAAGTTATCAGTCGACATGGTTTTGACGAACTTCGAGTGCTGGGCACATG
GTGATCCGTCGTCGTCGGCGGCCGCCACTTTCGAAACTGGAGCGCTGCGT
CCTTCGATGGATCCGTTCAATCCACGCGCCGTCACCTTCATGACCGACGC
CAACAACAACAACAACAACAATGATGGCAATAACCTCGCGGCACAACCGA
TGCCGGTCGTCCTGCCTCCGGAAGTCCTGCGCTGCAAGAAGCGCCTGAAT
CCCGGTCACAATCCTGTCGGGGATTTGGACACGGACCAACCGGTGTACAC
CAAGAGATGTCGCTACGACGAGTCTGACTTGGCCGCCCAGTACTGCAATG
ATTTCTTTTCCTTGCCTGCCACACAAATAATTGGAACGCAGGCCTCTTTG
ATGGATTACGAGATGCAGGCCACCGGCGGCATGATGATGATGGAATCGGA
GACGAGTTTTCCAGCGCAGCAGCAGCAACATCAAGAGCAACAGCAACATC
CACAGCAGCCACATCAATATCAGCGCATTCATCAGCATTATCAAGGTCAT
TTGCATCGCGCCAACCGTGATGTGAGTCGTTGCATGATGTCGCACATGAT
TTAGAAGCTTTCTAGACCAT

BS08828.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-RB 588 CG32428-PB 1..588 17..604 2940 100 Plus
CG32428-RA 588 CG32428-PA 1..588 17..604 2940 100 Plus
CG32428-RC 717 CG32428-PC 1..529 17..545 2645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-RB 1804 CG32428-RB 345..932 17..604 2940 100 Plus
CG32428-RA 1213 CG32428-RA 399..986 17..604 2940 100 Plus
CG32428-RC 1238 CG32428-RC 399..927 17..545 2645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20472641..20472974 350..17 1670 100 Minus
3L 28110227 3L 20470895..20471149 604..350 1275 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:36:30 has no hits.

BS08828.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:46 Download gff for BS08828.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 1..588 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:01 Download gff for BS08828.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RB 319..918 13..612 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:55 Download gff for BS08828.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 399..986 17..604 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:46 Download gff for BS08828.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 371..970 13..612 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:47 Download gff for BS08828.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 399..986 17..604 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:47 Download gff for BS08828.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20470895..20471148 351..604 100 <- Minus
3L 20472641..20472974 17..350 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:55 Download gff for BS08828.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20463995..20464248 351..604 100 <- Minus
arm_3L 20465741..20466074 17..350 100   Minus

BS08828.pep Sequence

Translation from 16 to 603

> BS08828.pep
MVLTNFECWAHGDPSSSAAATFETGALRPSMDPFNPRAVTFMTDANNNNN
NNDGNNLAAQPMPVVLPPEVLRCKKRLNPGHNPVGDLDTDQPVYTKRCRY
DESDLAAQYCNDFFSLPATQIIGTQASLMDYEMQATGGMMMMESETSFPA
QQQQHQEQQQHPQQPHQYQRIHQHYQGHLHRANRDVSRCMMSHMI*

BS08828.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-PB 195 CG32428-PB 1..195 1..195 1066 100 Plus
CG32428-PA 195 CG32428-PA 1..195 1..195 1066 100 Plus
CG32428-PC 238 CG32428-PC 1..176 1..176 961 100 Plus