Clone Sequence Records
BS08828.3prime Sequence
618 bp (617 high quality bases) assembled on 2006-01-18
> BS08828.3prime
ATGGTCTAGAAAGCTTCTAAATCATGTGCGACATCATGCAACGACTCACA
TCACGGTTGGCGCGATGCAAATGACCTTGATAATGCTGATGAATGCGCTG
ATATTGATGTGGCTGCTGTGGATGTTGCTGTTGCTCTTGATGTTGCTGCT
GCTGCGCTGGAAAACTCGTCTCCGATTCCATCATCATCATGCCGCCGGTG
GCCTGCATCTCGTAATCCATCAAAGAGGCCTGCGTTCCAATTATTTGTGT
GGCAGGCAAGGAAAAGAAATCATTGCAGTACTGGGCGGCCAAGTCAGACT
CGTCGTAGCGACATCTCTTGGTGTACACCGGTTGGTCCGTGTCCAAATCC
CCGACAGGATTGTGACCGGGATTCAGGCGCTTCTTGCAGCGCAGGACTTC
CGGAGGCAGGACGACCGGCATCGGTTGTGCCGCGAGGTTATTGCCATCAT
TGTTGTTGTTGTTGTTGTTGGCGTCGGTCATGAAGGTGACGGCGCGTGGA
TTGAACGGATCCATCGAAGGACGCAGCGCTCCAGTTTCGAAAGTGGCGGC
CGCCGACGACGACGGATCACCATGTGCCCAGCACTCGAAGTTCGTCAAAA
CCATGTCGACTGATAACT
BS08828.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32428-PA | 588 | CG32428-RA | 1..588 | 604..17 | 2940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32428-RB | 1804 | CG32428-RB | 345..932 | 604..17 | 2940 | 100 | Minus |
CG32428-RA | 1213 | CG32428-RA | 399..986 | 604..17 | 2940 | 100 | Minus |
CG32428-RC | 1238 | CG32428-RC | 399..927 | 604..76 | 2645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20472641..20472974 | 271..604 | 1670 | 100 | Plus |
3L | 28110227 | 3L | 20470895..20471149 | 17..271 | 1275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:03:44 has no hits.
BS08828.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:18 Download gff for
BS08828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-PA | 1..588 | 17..604 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:42 Download gff for
BS08828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-PA | 1..588 | 17..604 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:55:49 Download gff for
BS08828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 395..994 | 9..608 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:45 Download gff for
BS08828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 395..994 | 9..608 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:45 Download gff for
BS08828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20470887..20471148 | 9..270 | 98 | <- | Plus |
3L | 20472641..20472976 | 271..608 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:55:49 Download gff for
BS08828.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20463987..20464248 | 9..270 | 98 | <- | Plus |
arm_3L | 20465741..20466076 | 271..608 | 99 | | Plus |
BS08828.5prime Sequence
618 bp (617 high quality bases) assembled on 2006-01-18
> BS08828.5prime
GAAGTTATCAGTCGACATGGTTTTGACGAACTTCGAGTGCTGGGCACATG
GTGATCCGTCGTCGTCGGCGGCCGCCACTTTCGAAACTGGAGCGCTGCGT
CCTTCGATGGATCCGTTCAATCCACGCGCCGTCACCTTCATGACCGACGC
CAACAACAACAACAACAACAATGATGGCAATAACCTCGCGGCACAACCGA
TGCCGGTCGTCCTGCCTCCGGAAGTCCTGCGCTGCAAGAAGCGCCTGAAT
CCCGGTCACAATCCTGTCGGGGATTTGGACACGGACCAACCGGTGTACAC
CAAGAGATGTCGCTACGACGAGTCTGACTTGGCCGCCCAGTACTGCAATG
ATTTCTTTTCCTTGCCTGCCACACAAATAATTGGAACGCAGGCCTCTTTG
ATGGATTACGAGATGCAGGCCACCGGCGGCATGATGATGATGGAATCGGA
GACGAGTTTTCCAGCGCAGCAGCAGCAACATCAAGAGCAACAGCAACATC
CACAGCAGCCACATCAATATCAGCGCATTCATCAGCATTATCAAGGTCAT
TTGCATCGCGCCAACCGTGATGTGAGTCGTTGCATGATGTCGCACATGAT
TTAGAAGCTTTCTAGACC
BS08828.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32428-PA | 588 | CG32428-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:09:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32428-RB | 1804 | CG32428-RB | 345..932 | 17..604 | 2940 | 100 | Plus |
CG32428-RA | 1213 | CG32428-RA | 399..986 | 17..604 | 2940 | 100 | Plus |
CG32428-RC | 1238 | CG32428-RC | 399..927 | 17..545 | 2645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:09:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20472641..20472974 | 350..17 | 1670 | 100 | Minus |
3L | 28110227 | 3L | 20470895..20471149 | 604..350 | 1275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:09:29 has no hits.
BS08828.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:19 Download gff for
BS08828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-PA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:43 Download gff for
BS08828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-PA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:36 Download gff for
BS08828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 395..994 | 13..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:25:11 Download gff for
BS08828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 395..994 | 13..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:25:11 Download gff for
BS08828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20472641..20472976 | 13..350 | 99 | | Minus |
3L | 20470887..20471148 | 351..612 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:36 Download gff for
BS08828.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20463987..20464248 | 351..612 | 98 | <- | Minus |
arm_3L | 20465741..20466076 | 13..350 | 99 | | Minus |
BS08828.complete Sequence
620 bp (620 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636284
> BS08828.complete
GAAGTTATCAGTCGACATGGTTTTGACGAACTTCGAGTGCTGGGCACATG
GTGATCCGTCGTCGTCGGCGGCCGCCACTTTCGAAACTGGAGCGCTGCGT
CCTTCGATGGATCCGTTCAATCCACGCGCCGTCACCTTCATGACCGACGC
CAACAACAACAACAACAACAATGATGGCAATAACCTCGCGGCACAACCGA
TGCCGGTCGTCCTGCCTCCGGAAGTCCTGCGCTGCAAGAAGCGCCTGAAT
CCCGGTCACAATCCTGTCGGGGATTTGGACACGGACCAACCGGTGTACAC
CAAGAGATGTCGCTACGACGAGTCTGACTTGGCCGCCCAGTACTGCAATG
ATTTCTTTTCCTTGCCTGCCACACAAATAATTGGAACGCAGGCCTCTTTG
ATGGATTACGAGATGCAGGCCACCGGCGGCATGATGATGATGGAATCGGA
GACGAGTTTTCCAGCGCAGCAGCAGCAACATCAAGAGCAACAGCAACATC
CACAGCAGCCACATCAATATCAGCGCATTCATCAGCATTATCAAGGTCAT
TTGCATCGCGCCAACCGTGATGTGAGTCGTTGCATGATGTCGCACATGAT
TTAGAAGCTTTCTAGACCAT
BS08828.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32428-RB | 588 | CG32428-PB | 1..588 | 17..604 | 2940 | 100 | Plus |
CG32428-RA | 588 | CG32428-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
CG32428-RC | 717 | CG32428-PC | 1..529 | 17..545 | 2645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32428-RB | 1804 | CG32428-RB | 345..932 | 17..604 | 2940 | 100 | Plus |
CG32428-RA | 1213 | CG32428-RA | 399..986 | 17..604 | 2940 | 100 | Plus |
CG32428-RC | 1238 | CG32428-RC | 399..927 | 17..545 | 2645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20472641..20472974 | 350..17 | 1670 | 100 | Minus |
3L | 28110227 | 3L | 20470895..20471149 | 604..350 | 1275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:36:30 has no hits.
BS08828.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:46 Download gff for
BS08828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 1..588 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:32:01 Download gff for
BS08828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RB | 319..918 | 13..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:55 Download gff for
BS08828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 399..986 | 17..604 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:46 Download gff for
BS08828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 371..970 | 13..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:47 Download gff for
BS08828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 399..986 | 17..604 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:47 Download gff for
BS08828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20470895..20471148 | 351..604 | 100 | <- | Minus |
3L | 20472641..20472974 | 17..350 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:55 Download gff for
BS08828.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20463995..20464248 | 351..604 | 100 | <- | Minus |
arm_3L | 20465741..20466074 | 17..350 | 100 | | Minus |
BS08828.pep Sequence
Translation from 16 to 603
> BS08828.pep
MVLTNFECWAHGDPSSSAAATFETGALRPSMDPFNPRAVTFMTDANNNNN
NNDGNNLAAQPMPVVLPPEVLRCKKRLNPGHNPVGDLDTDQPVYTKRCRY
DESDLAAQYCNDFFSLPATQIIGTQASLMDYEMQATGGMMMMESETSFPA
QQQQHQEQQQHPQQPHQYQRIHQHYQGHLHRANRDVSRCMMSHMI*
BS08828.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32428-PB | 195 | CG32428-PB | 1..195 | 1..195 | 1066 | 100 | Plus |
CG32428-PA | 195 | CG32428-PA | 1..195 | 1..195 | 1066 | 100 | Plus |
CG32428-PC | 238 | CG32428-PC | 1..176 | 1..176 | 961 | 100 | Plus |