Clone BS08831 Report

Search the DGRC for BS08831

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:31
Vector:pDNR-Dual
Associated Gene/Transcriptyellow-b-RA
Protein status:BS08831.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08831.3prime Sequence

934 bp (861 high quality bases) assembled on 2006-01-18

> BS08831.3prime
ATGGTCTAGAAAGCTTCTAGATTCTAAAGCTCATCAGCAAACATAAGGCA
ATCAGCATAAGGGAGCTGAGGTTCCTAAGGGAAGAAGCCGAATTGGACTT
CAGTTTGATGTTAGTATTGAGAATATCCCCCAGTTTGTTGATTACATCTG
GCAGAGGGGAAGTTCTAATTTCACAGGCTGTATTCTCAATGGCCTCCTTA
ACACTGGCAGTCAGGATACGGAAGTTTATTGAGCCGGCGTACAGTTCATC
GTAGATGAAGACGGGTAGCTGATTGGATAGGACCCATAGACGTTTCTGAT
CATCAACCTTGATGTCACTGGGGAACACCAAGGTATCATTGTTCATGTGG
ATGCGGCTCTGGGAACTGTGACTAAAGTCTGTGGCAGTGCGCCAGCAGGC
GACTTCGTTCAGATTGGGCAGGGCGTAGAATAGGACTCCGGTATCCGGAT
CCAAGAACTCGGCTCCAGCCTGGGTGTTCGGTCCTCTGGAGCCCAGCACC
TTGAATTCTCGATAAATCATCGGCGAAGTGGCCAGGGTCTTGTTACGCAA
TATCGATGTATCCACCGAGAATTCCGTAGTGGAGCAGAGGGGATGGAAGT
ACAATGTGGCATAGCCCGTTTCCAGGGGCTTCGATAGAGCCAGTCCGTAT
AGGCCATCATCCCATTGAAACTCAATGCCATTGATGCTGAAGTTACCGGC
CATTGGATCTGGGTGGAAGAAGTGATGCTGCACACGCCACGATTCCTCAT
CCTTCCATGAGTAAACCACCAAGCCGGGACTGCCCAAATCGGCTGCGTAG
GCAAAGGTATTCTCACAGTCAGAGTCCTCCACCGCCAGATTGGCCAGTAA
AGATCCCTGCTTCAACTGACCGGCGGGCAAAACGTGTCGTCTCACAAATC
ATCATTGTGCAGATCGTAGACCAGCAGCTGGGCT

BS08831.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG17914-PA 1362 yellow-b-RA 485..1362 894..17 4390 100 Minus
CG17914-PA 1362 yellow-b-RA 444..484 934..894 205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-b-RB 1839 CG17914-RB 703..1622 934..16 4575 99.9 Minus
yellow-b-RA 1659 CG17914-RA 523..1442 934..16 4575 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16757147..16758066 934..16 4550 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 18:00:11 has no hits.

BS08831.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:22 Download gff for BS08831.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17914-PA 444..1362 17..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:47 Download gff for BS08831.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17914-PA 444..1362 17..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:17:50 Download gff for BS08831.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 523..1442 16..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:27 Download gff for BS08831.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 523..1442 16..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:27 Download gff for BS08831.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16757147..16758066 16..934 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:17:50 Download gff for BS08831.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16757147..16758066 16..934 99   Minus

BS08831.5prime Sequence

889 bp (859 high quality bases) assembled on 2006-01-18

> BS08831.5prime
GAAGTTATCAGTCGACATGCTGCGATTCAGATTAGGCCTGCTACTTCTGT
GGGCGGTCTCTGCCCTGGCGAACGACAATCTTCGCGTAGCGTACGAGTGG
CGGGAAATGGACTTCAAGTACGCCAATCCAGACCAAAGATGGTCGGCCAT
CGAGCGGGGCGAGTTCAAGCCGGCCAATGTGATACCCTTTGGCCTGGAGG
TTGCCGGCCACCGACTCTTTGTCACCCTGCCCAGATGGAGGGACGGAGTG
CCGGCCTCGTTGGCCTACCTTGATCTTAATGATACCTCCAGCAAGGGTCC
AGCCTTGAAGCCATTCCCCAGCTGGCAGGCTCACAATCTCCAGGAAGCCG
AACCGGAATTGGTTTCTCCATTCCGCGTGCGAGCCGATAGATGCGGACGC
CTGTGGGTGCTCGACTCTAGGATCTCCGGAGTCCTGGAGCAGACCAAGAT
CTATGGAGCAGCCCAGCTGCTGGTCTACGATCTGCACAATGATGATTTGT
TGAGACGACACGTTTTGCCCGCCGGTCAGTTGAAGCAGGGATCTTTACTG
GCCAATCTGGCGGTGGAGGACTCTGACTGTGAGAATACCTTTGCCTACGC
AGCCGATTTGGGCAGTCCCGGCTTGGTGGTTTACTCATGGAAGGATGAGG
AATCGTGGCGTGTGCAGCATCACTTCTTCCACCCAGATCCAATGGCCGGT
AACTTCAGCATCAATGGCATTGAGTTTCAATGGGATGATGGCCTATACGG
ACTGGCTCTATCGAAGCCCCTGGAAACGGGCTATGCCACATTGTACTTCC
ATCCCCTCTGCTCCACTACGGAATTCTCGGTGGATACATCGATATTGCGT
AACAAGACCCTGGCCACTTCGCCGATGATTTATCGAGAA

BS08831.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17914-PA 1362 yellow-b-RA 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-b-RB 1839 CG17914-RB 257..1132 14..889 4380 100 Plus
yellow-b-RA 1659 CG17914-RA 77..952 14..889 4380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16756968..16757576 281..889 3045 100 Plus
2L 23513712 2L 16755696..16755963 14..281 1340 100 Plus
Blast to na_te.dros performed on 2015-02-13 07:32:52 has no hits.

BS08831.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:23 Download gff for BS08831.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17914-PA 1..871 17..887 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:49 Download gff for BS08831.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17914-PA 1..871 17..887 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:47:55 Download gff for BS08831.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 69..952 5..889 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:34:26 Download gff for BS08831.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 69..952 5..889 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:34:26 Download gff for BS08831.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16755688..16755963 5..281 98 -> Plus
2L 16756969..16757576 282..889 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:47:55 Download gff for BS08831.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16755688..16755963 5..281 98 -> Plus
arm_2L 16756969..16757576 282..889 100   Plus

BS08831.complete Sequence

1394 bp (1394 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636286

> BS08831.complete
GAAGTTATCAGTCGACATGCTGCGATTCAGATTAGGCCTGCTACTTCTGT
GGGCGGTCTCTGCCCTGGCGAACGACAATCTTCGCGTAGCGTACGAGTGG
CGGGAAATGGACTTCAAGTACGCCAATCCAGACCAAAGATGGTCGGCCAT
CGAGCGGGGCGAGTTCAAGCCGGCCAATGTGATACCCTTTGGCCTGGAGG
TTGCCGGCCACCGACTCTTTGTCACCCTGCCCAGATGGAGGGACGGAGTG
CCGGCCTCGTTGGCCTACCTTGATCTTAATGATACCTCCAGCAAGGGTCC
AGCCTTGAAGCCATTCCCCAGCTGGCAGGCTCACAATCTCCAGGAAGCCG
AACCGGAATTGGTTTCTCCATTCCGCGTGCGAGCCGATAGATGCGGACGC
CTGTGGGTGCTCGACTCTAGGATCTCCGGAGTCCTGGAGCAGACCAAGAT
CTATGGAGCAGCCCAGCTGCTGGTCTACGATCTGCACAATGATGATTTGT
TGAGACGACACGTTTTGCCCGCCGGTCAGTTGAAGCAGGGATCTTTACTG
GCCAATCTGGCGGTGGAGGACTCTGACTGTGAGAATACCTTTGCCTACGC
AGCCGATTTGGGCAGTCCCGGCTTGGTGGTTTACTCATGGAAGGATGAGG
AATCGTGGCGTGTGCAGCATCACTTCTTCCACCCAGATCCAATGGCCGGT
AACTTCAGCATCAATGGCATTGAGTTTCAATGGGATGATGGCCTATACGG
ACTGGCTCTATCGAAGCCCCTGGAAACGGGCTATGCCACATTGTACTTCC
ATCCCCTCTGCTCCACTACGGAATTCTCGGTGGATACATCGATATTGCGT
AACAAGACCCTGGCCACTTCGCCGATGATTTATCGAGAATTCAAGGTGCT
GGGCTCCAGAGGACCGAACACCCAGGCTGGAGCCGAGTTCTTGGATCCGG
ATACCGGAGTCCTATTCTACGCCCTGCCCAATCTGAACGAAGTCGCCTGC
TGGCGCACTGCCACAGACTTTAGTCACAGTTCCCAGAGCCGCATCCACAT
GAACAATGATACCTTGGTGTTCCCCAGTGACATCAAGGTTGATGATCAGA
AACGTCTATGGGTCCTATCCAATCAGCTACCCGTCTTCATCTACGATGAA
CTGTACGCCGGCTCAATAAACTTCCGTATCCTGACTGCCAGTGTTAAGGA
GGCCATTGAGAATACAGCCTGTGAAATTAGAACTTCCCCTCTGCCAGATG
TAATCAACAAACTGGGGGATATTCTCAATACTAACATCAAACTGAAGTCC
AATTCGGCTTCTTCCCTTAGGAACCTCAGCTCCCTTATGCTGATTGCCTT
ATGTTTGCTGATGAGCTTTAGAATCTAGAAGCTTTCTAGACCAT

BS08831.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-b-RB 1362 CG17914-PB 1..1362 17..1378 6810 100 Plus
yellow-b-RA 1362 CG17914-PA 1..1362 17..1378 6810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-b-RB 1839 CG17914-RB 257..1622 14..1379 6830 100 Plus
yellow-b-RA 1659 CG17914-RA 77..1442 14..1379 6830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16756968..16758066 281..1379 5495 100 Plus
2L 23513712 2L 16755696..16755963 14..281 1340 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:24:47 has no hits.

BS08831.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:02 Download gff for BS08831.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 1..1362 17..1378 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:13 Download gff for BS08831.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 69..1442 5..1379 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:24 Download gff for BS08831.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 80..1441 17..1378 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:03 Download gff for BS08831.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 69..1442 5..1379 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:55 Download gff for BS08831.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-b-RA 80..1441 17..1378 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:55 Download gff for BS08831.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16755699..16755963 17..281 100 -> Plus
2L 16756969..16758065 282..1378 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:24 Download gff for BS08831.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16755699..16755963 17..281 100 -> Plus
arm_2L 16756969..16758065 282..1378 100   Plus

BS08831.pep Sequence

Translation from 16 to 1377

> BS08831.pep
MLRFRLGLLLLWAVSALANDNLRVAYEWREMDFKYANPDQRWSAIERGEF
KPANVIPFGLEVAGHRLFVTLPRWRDGVPASLAYLDLNDTSSKGPALKPF
PSWQAHNLQEAEPELVSPFRVRADRCGRLWVLDSRISGVLEQTKIYGAAQ
LLVYDLHNDDLLRRHVLPAGQLKQGSLLANLAVEDSDCENTFAYAADLGS
PGLVVYSWKDEESWRVQHHFFHPDPMAGNFSINGIEFQWDDGLYGLALSK
PLETGYATLYFHPLCSTTEFSVDTSILRNKTLATSPMIYREFKVLGSRGP
NTQAGAEFLDPDTGVLFYALPNLNEVACWRTATDFSHSSQSRIHMNNDTL
VFPSDIKVDDQKRLWVLSNQLPVFIYDELYAGSINFRILTASVKEAIENT
ACEIRTSPLPDVINKLGDILNTNIKLKSNSASSLRNLSSLMLIALCLLMS
FRI*

BS08831.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-b-PB 453 CG17914-PB 1..453 1..453 2379 100 Plus
yellow-b-PA 453 CG17914-PA 1..453 1..453 2379 100 Plus
yellow-c-PB 438 CG4182-PB 6..438 1..404 840 37.6 Plus
yellow-c-PA 438 CG4182-PA 6..438 1..404 840 37.6 Plus
y-PA 541 CG3757-PA 25..410 22..407 772 37.5 Plus