Clone Sequence Records
BS08831.3prime Sequence
934 bp (861 high quality bases) assembled on 2006-01-18
> BS08831.3prime
ATGGTCTAGAAAGCTTCTAGATTCTAAAGCTCATCAGCAAACATAAGGCA
ATCAGCATAAGGGAGCTGAGGTTCCTAAGGGAAGAAGCCGAATTGGACTT
CAGTTTGATGTTAGTATTGAGAATATCCCCCAGTTTGTTGATTACATCTG
GCAGAGGGGAAGTTCTAATTTCACAGGCTGTATTCTCAATGGCCTCCTTA
ACACTGGCAGTCAGGATACGGAAGTTTATTGAGCCGGCGTACAGTTCATC
GTAGATGAAGACGGGTAGCTGATTGGATAGGACCCATAGACGTTTCTGAT
CATCAACCTTGATGTCACTGGGGAACACCAAGGTATCATTGTTCATGTGG
ATGCGGCTCTGGGAACTGTGACTAAAGTCTGTGGCAGTGCGCCAGCAGGC
GACTTCGTTCAGATTGGGCAGGGCGTAGAATAGGACTCCGGTATCCGGAT
CCAAGAACTCGGCTCCAGCCTGGGTGTTCGGTCCTCTGGAGCCCAGCACC
TTGAATTCTCGATAAATCATCGGCGAAGTGGCCAGGGTCTTGTTACGCAA
TATCGATGTATCCACCGAGAATTCCGTAGTGGAGCAGAGGGGATGGAAGT
ACAATGTGGCATAGCCCGTTTCCAGGGGCTTCGATAGAGCCAGTCCGTAT
AGGCCATCATCCCATTGAAACTCAATGCCATTGATGCTGAAGTTACCGGC
CATTGGATCTGGGTGGAAGAAGTGATGCTGCACACGCCACGATTCCTCAT
CCTTCCATGAGTAAACCACCAAGCCGGGACTGCCCAAATCGGCTGCGTAG
GCAAAGGTATTCTCACAGTCAGAGTCCTCCACCGCCAGATTGGCCAGTAA
AGATCCCTGCTTCAACTGACCGGCGGGCAAAACGTGTCGTCTCACAAATC
ATCATTGTGCAGATCGTAGACCAGCAGCTGGGCT
BS08831.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17914-PA | 1362 | yellow-b-RA | 485..1362 | 894..17 | 4390 | 100 | Minus |
CG17914-PA | 1362 | yellow-b-RA | 444..484 | 934..894 | 205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-b-RB | 1839 | CG17914-RB | 703..1622 | 934..16 | 4575 | 99.9 | Minus |
yellow-b-RA | 1659 | CG17914-RA | 523..1442 | 934..16 | 4575 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16757147..16758066 | 934..16 | 4550 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:00:11 has no hits.
BS08831.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:22 Download gff for
BS08831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17914-PA | 444..1362 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:47 Download gff for
BS08831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17914-PA | 444..1362 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:17:50 Download gff for
BS08831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 523..1442 | 16..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:27 Download gff for
BS08831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 523..1442 | 16..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:27 Download gff for
BS08831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16757147..16758066 | 16..934 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:17:50 Download gff for
BS08831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16757147..16758066 | 16..934 | 99 | | Minus |
BS08831.5prime Sequence
889 bp (859 high quality bases) assembled on 2006-01-18
> BS08831.5prime
GAAGTTATCAGTCGACATGCTGCGATTCAGATTAGGCCTGCTACTTCTGT
GGGCGGTCTCTGCCCTGGCGAACGACAATCTTCGCGTAGCGTACGAGTGG
CGGGAAATGGACTTCAAGTACGCCAATCCAGACCAAAGATGGTCGGCCAT
CGAGCGGGGCGAGTTCAAGCCGGCCAATGTGATACCCTTTGGCCTGGAGG
TTGCCGGCCACCGACTCTTTGTCACCCTGCCCAGATGGAGGGACGGAGTG
CCGGCCTCGTTGGCCTACCTTGATCTTAATGATACCTCCAGCAAGGGTCC
AGCCTTGAAGCCATTCCCCAGCTGGCAGGCTCACAATCTCCAGGAAGCCG
AACCGGAATTGGTTTCTCCATTCCGCGTGCGAGCCGATAGATGCGGACGC
CTGTGGGTGCTCGACTCTAGGATCTCCGGAGTCCTGGAGCAGACCAAGAT
CTATGGAGCAGCCCAGCTGCTGGTCTACGATCTGCACAATGATGATTTGT
TGAGACGACACGTTTTGCCCGCCGGTCAGTTGAAGCAGGGATCTTTACTG
GCCAATCTGGCGGTGGAGGACTCTGACTGTGAGAATACCTTTGCCTACGC
AGCCGATTTGGGCAGTCCCGGCTTGGTGGTTTACTCATGGAAGGATGAGG
AATCGTGGCGTGTGCAGCATCACTTCTTCCACCCAGATCCAATGGCCGGT
AACTTCAGCATCAATGGCATTGAGTTTCAATGGGATGATGGCCTATACGG
ACTGGCTCTATCGAAGCCCCTGGAAACGGGCTATGCCACATTGTACTTCC
ATCCCCTCTGCTCCACTACGGAATTCTCGGTGGATACATCGATATTGCGT
AACAAGACCCTGGCCACTTCGCCGATGATTTATCGAGAA
BS08831.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17914-PA | 1362 | yellow-b-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-b-RB | 1839 | CG17914-RB | 257..1132 | 14..889 | 4380 | 100 | Plus |
yellow-b-RA | 1659 | CG17914-RA | 77..952 | 14..889 | 4380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:32:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16756968..16757576 | 281..889 | 3045 | 100 | Plus |
2L | 23513712 | 2L | 16755696..16755963 | 14..281 | 1340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:32:52 has no hits.
BS08831.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:23 Download gff for
BS08831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17914-PA | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:49 Download gff for
BS08831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17914-PA | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:47:55 Download gff for
BS08831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 69..952 | 5..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:34:26 Download gff for
BS08831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 69..952 | 5..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:34:26 Download gff for
BS08831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16755688..16755963 | 5..281 | 98 | -> | Plus |
2L | 16756969..16757576 | 282..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:47:55 Download gff for
BS08831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16755688..16755963 | 5..281 | 98 | -> | Plus |
arm_2L | 16756969..16757576 | 282..889 | 100 | | Plus |
BS08831.complete Sequence
1394 bp (1394 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ636286
> BS08831.complete
GAAGTTATCAGTCGACATGCTGCGATTCAGATTAGGCCTGCTACTTCTGT
GGGCGGTCTCTGCCCTGGCGAACGACAATCTTCGCGTAGCGTACGAGTGG
CGGGAAATGGACTTCAAGTACGCCAATCCAGACCAAAGATGGTCGGCCAT
CGAGCGGGGCGAGTTCAAGCCGGCCAATGTGATACCCTTTGGCCTGGAGG
TTGCCGGCCACCGACTCTTTGTCACCCTGCCCAGATGGAGGGACGGAGTG
CCGGCCTCGTTGGCCTACCTTGATCTTAATGATACCTCCAGCAAGGGTCC
AGCCTTGAAGCCATTCCCCAGCTGGCAGGCTCACAATCTCCAGGAAGCCG
AACCGGAATTGGTTTCTCCATTCCGCGTGCGAGCCGATAGATGCGGACGC
CTGTGGGTGCTCGACTCTAGGATCTCCGGAGTCCTGGAGCAGACCAAGAT
CTATGGAGCAGCCCAGCTGCTGGTCTACGATCTGCACAATGATGATTTGT
TGAGACGACACGTTTTGCCCGCCGGTCAGTTGAAGCAGGGATCTTTACTG
GCCAATCTGGCGGTGGAGGACTCTGACTGTGAGAATACCTTTGCCTACGC
AGCCGATTTGGGCAGTCCCGGCTTGGTGGTTTACTCATGGAAGGATGAGG
AATCGTGGCGTGTGCAGCATCACTTCTTCCACCCAGATCCAATGGCCGGT
AACTTCAGCATCAATGGCATTGAGTTTCAATGGGATGATGGCCTATACGG
ACTGGCTCTATCGAAGCCCCTGGAAACGGGCTATGCCACATTGTACTTCC
ATCCCCTCTGCTCCACTACGGAATTCTCGGTGGATACATCGATATTGCGT
AACAAGACCCTGGCCACTTCGCCGATGATTTATCGAGAATTCAAGGTGCT
GGGCTCCAGAGGACCGAACACCCAGGCTGGAGCCGAGTTCTTGGATCCGG
ATACCGGAGTCCTATTCTACGCCCTGCCCAATCTGAACGAAGTCGCCTGC
TGGCGCACTGCCACAGACTTTAGTCACAGTTCCCAGAGCCGCATCCACAT
GAACAATGATACCTTGGTGTTCCCCAGTGACATCAAGGTTGATGATCAGA
AACGTCTATGGGTCCTATCCAATCAGCTACCCGTCTTCATCTACGATGAA
CTGTACGCCGGCTCAATAAACTTCCGTATCCTGACTGCCAGTGTTAAGGA
GGCCATTGAGAATACAGCCTGTGAAATTAGAACTTCCCCTCTGCCAGATG
TAATCAACAAACTGGGGGATATTCTCAATACTAACATCAAACTGAAGTCC
AATTCGGCTTCTTCCCTTAGGAACCTCAGCTCCCTTATGCTGATTGCCTT
ATGTTTGCTGATGAGCTTTAGAATCTAGAAGCTTTCTAGACCAT
BS08831.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:24:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-b-RB | 1362 | CG17914-PB | 1..1362 | 17..1378 | 6810 | 100 | Plus |
yellow-b-RA | 1362 | CG17914-PA | 1..1362 | 17..1378 | 6810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-b-RB | 1839 | CG17914-RB | 257..1622 | 14..1379 | 6830 | 100 | Plus |
yellow-b-RA | 1659 | CG17914-RA | 77..1442 | 14..1379 | 6830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16756968..16758066 | 281..1379 | 5495 | 100 | Plus |
2L | 23513712 | 2L | 16755696..16755963 | 14..281 | 1340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:24:47 has no hits.
BS08831.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:02 Download gff for
BS08831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 1..1362 | 17..1378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:13 Download gff for
BS08831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 69..1442 | 5..1379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:24 Download gff for
BS08831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 80..1441 | 17..1378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:03 Download gff for
BS08831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 69..1442 | 5..1379 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:55 Download gff for
BS08831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-b-RA | 80..1441 | 17..1378 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:55 Download gff for
BS08831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16755699..16755963 | 17..281 | 100 | -> | Plus |
2L | 16756969..16758065 | 282..1378 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:24 Download gff for
BS08831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16755699..16755963 | 17..281 | 100 | -> | Plus |
arm_2L | 16756969..16758065 | 282..1378 | 100 | | Plus |
BS08831.pep Sequence
Translation from 16 to 1377
> BS08831.pep
MLRFRLGLLLLWAVSALANDNLRVAYEWREMDFKYANPDQRWSAIERGEF
KPANVIPFGLEVAGHRLFVTLPRWRDGVPASLAYLDLNDTSSKGPALKPF
PSWQAHNLQEAEPELVSPFRVRADRCGRLWVLDSRISGVLEQTKIYGAAQ
LLVYDLHNDDLLRRHVLPAGQLKQGSLLANLAVEDSDCENTFAYAADLGS
PGLVVYSWKDEESWRVQHHFFHPDPMAGNFSINGIEFQWDDGLYGLALSK
PLETGYATLYFHPLCSTTEFSVDTSILRNKTLATSPMIYREFKVLGSRGP
NTQAGAEFLDPDTGVLFYALPNLNEVACWRTATDFSHSSQSRIHMNNDTL
VFPSDIKVDDQKRLWVLSNQLPVFIYDELYAGSINFRILTASVKEAIENT
ACEIRTSPLPDVINKLGDILNTNIKLKSNSASSLRNLSSLMLIALCLLMS
FRI*
BS08831.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-b-PB | 453 | CG17914-PB | 1..453 | 1..453 | 2379 | 100 | Plus |
yellow-b-PA | 453 | CG17914-PA | 1..453 | 1..453 | 2379 | 100 | Plus |
yellow-c-PB | 438 | CG4182-PB | 6..438 | 1..404 | 840 | 37.6 | Plus |
yellow-c-PA | 438 | CG4182-PA | 6..438 | 1..404 | 840 | 37.6 | Plus |
y-PA | 541 | CG3757-PA | 25..410 | 22..407 | 772 | 37.5 | Plus |