Clone BS08832 Report

Search the DGRC for BS08832

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:88
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG5262-RA
Protein status:BS08832.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS08832.3prime Sequence

924 bp (892 high quality bases) assembled on 2006-01-18

> BS08832.3prime
ATGGTCTAGAAAGCTTTTAACTGAACAAATTTATAGATACCAAACAGACG
CATAAAATTGACCAAATGAAGACGAAAACTAGCCAGGCACTGGACTTGAA
AGGACTTTTAAAACGATTGACTACGCCGCTTCCCAGGAGCTCTGAGCAAG
TGCGTCTCGCAAAGTAAACCAAGAAAACGGGGATAATGTATTGAATGCCA
GTGCCTGCGTAGGTGCCAGTAAATGCCACCAAACTGGATAAACTTTCAGT
GAAATAGGTGATACAAAAAGGCGGAATTATGGCGAGCAAAGGGAAGCACA
GGCGTAGGATAACGCTATAGGATTCATATTGCGACATGTCTAGGAATAGA
GATTGAAGGTTGTTCTTCAGCGTTATGGCAACAATGGGAAAACTGGTTGA
CAGGGTAAATATGGGAAAAAGTGCAAGGAAGTAATCAATGCAAATCAATA
GACCTGACCAAAAGTCTACGTAGGCCACATCGTAGGGCAAAAAATCTAAT
GTGTAAAGGTCTTCGATTCGTTCGAAGGCAAAAATGCCTGTCATGGCCAG
TAGAATGTAAAATGCACAAATGATTATGTAGTCAATGGATAGAATTTTGG
AAACCATTGACTTGTGTCTGATGGGCGCCAGCAAACTGGGCAGTGAGTGG
TGGCACATGAAGGAGTAAACACAGGCGCCGAAAAGAGAGGGAATTCCATA
TACATTAAAGGTCGCTGGATGACCTTTGGCACCTCTGGAAATCAAAAGTT
TTAGCGATATGCAGATCATCAGGGTAAAAGCCATCCACCGAAAAGCAGCG
GTCAGCATCTGCAGGTACTTCGTTTTCTGCACATTAAAGTACACAAATGG
ACCAAAGATCAATGTGAATCCTATGAGCAACACCCTGTACATGTTCAAGC
GAGATATCGTGTGTTTCCTCCAGC

BS08832.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5262-PA 1530 CG5262-RA 632..1530 915..17 4495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5262-RB 2033 CG5262-RB 735..1642 924..17 4510 99.8 Minus
CG5262-RA 1895 CG5262-RA 735..1642 924..17 4510 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20428353..20429117 17..781 3825 100 Plus
3L 28110227 3L 20429169..20429312 781..924 690 98.6 Plus
Blast to na_te.dros performed on 2015-02-02 17:11:29 has no hits.

BS08832.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:24 Download gff for BS08832.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5262-PA 623..1530 17..924 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:50 Download gff for BS08832.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5262-PA 623..1530 17..924 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:35:18 Download gff for BS08832.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 735..1649 8..924 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:06:34 Download gff for BS08832.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 735..1649 8..924 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:06:34 Download gff for BS08832.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20428346..20429116 8..780 99 <- Plus
3L 20429169..20429312 781..924 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:35:18 Download gff for BS08832.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20421446..20422216 8..780 99 <- Plus
arm_3L 20422269..20422412 781..924 98   Plus

BS08832.5prime Sequence

943 bp (831 high quality bases) assembled on 2006-01-18

> BS08832.5prime
GAAGTTATCAGTCGACATGCCTCGCCTTGTCAATGGCCGCGAAGCCGCGC
CCACGTACTCGAATCTGGTTGGCTTCATATTCATTTTCAATCTAATCGTT
GGAACCGGAGCGCTGACGCTACCCGGAGTCTTTGCCAGGGCAGGATGGAT
GCTTTCCCTGATCGTCATTGTTCTGCTGGCCATCATCAGTTACATGACGG
TCACTTTTATCATAGAAGCAATGGCTTGTGCGAATGCAATCAGGAATTGG
CAGACTCTGCAGGCCCTGCGCCAAAGTCGCAGTTCCGCCGAAAACAGTGA
AAACGATGATAATGCTGATGATGTTTCGCTGGCATCGGGAGCCGAGCAAG
TTGGCGATTTCGAGCGGGTTCCGCTGACCATCCAAAACCGGGAGTTCCAC
TACTATCAGCTGTCCCACAAATTCGAACTTGGCGAAATGGCGACACTATT
CTTTAATGAGTTTGGCCGCGTAATGTTCTATCTCTGCCTGATTGTTTATC
TTTACGGGGATCTGAGCATATATTCCGCCGCCGTGGCAAGAAGTCTGCGT
GACGTCGTATGTGACCAAACAAATGGAACGGATACTAATAACTTGATGTA
TTGGCCCGGAGACTTTGAGAACAATACATCTCTGGCCTGCTGGAAGGAAC
ACACGATATCTCGCTTGAACATGTACAGGGTGTTGCTCATAGGATTCACA
TTGATCTTTGGTCCATTTGTGTACTTTAATGTGCAGAAAACGAAGTACCT
GCAGATGCTGACCGCTGCTTTTCGGTGGATGGCTTTTACCCTGATGATCT
GCATATCGCTAAAACTTTTGATTTCCAGAGGTGCCAAAGGTCATCCAGCG
AACTTTTATGTATATGGAATTCCCTCTCTTTTCGGCGCCTGTGTTTACTC
CTTCATGTGCCACCACTCACTGCCCAGTTTGCTGGGGCCCATC

BS08832.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5262-PA 1530 CG5262-RA 1..927 17..943 4560 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5262-RB 2033 CG5262-RB 113..1039 17..943 4590 99.7 Plus
CG5262-RA 1895 CG5262-RA 113..1039 17..943 4590 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20429516..20430010 561..67 2475 100 Minus
3L 28110227 3L 20429169..20429390 782..561 1110 100 Minus
3L 28110227 3L 20428956..20429117 943..782 765 98.1 Minus
3L 28110227 3L 20430311..20430363 69..17 265 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:32:32 has no hits.

BS08832.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 09:51:25 Download gff for BS08832.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5262-PA 1..927 17..943 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 10:54:52 Download gff for BS08832.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5262-PA 1..927 17..943 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:34:36 Download gff for BS08832.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 107..1039 11..943 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:03:57 Download gff for BS08832.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 107..1039 11..943 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:03:57 Download gff for BS08832.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20428956..20429116 783..943 98 <- Minus
3L 20429169..20429389 562..782 100 <- Minus
3L 20429516..20430009 68..561 100 <- Minus
3L 20430313..20430369 11..67 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:34:36 Download gff for BS08832.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20422056..20422216 783..943 98 <- Minus
arm_3L 20422269..20422489 562..782 100 <- Minus
arm_3L 20422616..20423109 68..561 100 <- Minus
arm_3L 20423413..20423469 11..67 94   Minus

BS08832.complete Sequence

1562 bp (1562 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ636287

> BS08832.complete
GAAGTTATCAGTCGACATGCCTCGCCTTGTCAATGGCCGCGAAGCCGCGC
CCACGTACTCGAATCTGGTTGGCTTCATATTCATTTTCAATCTAATCGTT
GGAACCGGAGCGCTGACGCTACCCGGAGTCTTTGCCAGGGCAGGATGGAT
GCTTTCCCTGATCGTCATTGTTCTGCTGGCCATCATCAGTTACATGACGG
TCACTTTTATCATAGAAGCAATGGCTTGTGCGAATGCAATCAGGAATTGG
CAGACTCTGCAGGCCCTGCGCCAAAGTCGCAGTTCCGCCGAAAACAGTGA
AAACGATGATAATGCTGATGATGTTTCGCTGGCATCGGGAGCCGAGCAAG
TTGGCGATTTCGAGCGGGTTCCGCTGACCATCCAAAACCGGGAGTTCCAC
TACTATCAGCTGTCCCACAAATTCGAACTTGGCGAAATGGCGACACTATT
CTTTAATGAGTTTGGCCGCGTAATGTTCTATCTCTGCCTGATTGTTTATC
TTTACGGGGATCTGAGCATATATTCCGCCGCCGTGGCAAGAAGTCTGCGT
GACGTCGTATGTGACCAAACAAATGGAACGGATACTAATAACTTGATGTA
TTGGCCCGGAGACTTTGAGAACAATACATCTCTGGCCTGCTGGAAGGAAC
ACACGATATCTCGCTTGAACATGTACAGGGTGTTGCTCATAGGATTCACA
TTGATCTTTGGTCCATTTGTGTACTTTAATGTGCAGAAAACGAAGTACCT
GCAGATGCTGACCGCTGCTTTTCGGTGGATGGCTTTTACCCTGATGATCT
GCATATCGCTAAAACTTTTGATTTCCAGAGGTGCCAAAGGTCATCCAGCG
ACCTTTAATGTATATGGAATTCCCTCTCTTTTCGGCGCCTGTGTTTACTC
CTTCATGTGCCACCACTCACTGCCCAGTTTGCTGGCGCCCATCAGACACA
AGTCAATGGTTTCCAAAATTCTATCCATTGACTACATAATCATTTGTGCA
TTTTACATTCTACTGGCCATGACAGGCATTTTTGCCTTCGAACGAATCGA
AGACCTTTACACATTAGATTTTTTGCCCTACGATGTGGCCTACGTAGACT
TTTGGTCAGGTCTATTGATTTGCATTGATTACTTCCTTGCACTTTTTCCC
ATATTTACCCTGTCAACCAGTTTTCCCATTGTTGCCATAACGCTGAAGAA
CAACCTTCAATCTCTATTCCTAGACATGTCGCAATATGAATCCTATAGCG
TTATCCTACGCCTGTGCTTCCCTTTGCTCGCCATAATTCCGCCTTTTTGT
ATCACCTATTTCACTGAAAGTTTATCCAGTTTGGTGGCATTTACTGGCAC
CTACGCAGGCACTGGCATTCAATACATTATCCCCGTTTTCTTGGTTTACT
TTGCGAGACGCACTTGCTCAGAGCTCCTGGGAAGCGGCGTAGTCAATCGT
TTTAAAAGTCCTTTCAAGTCCAGTGCCTGGCTAGTTTTCGTCTTCATTTG
GTCAATTTTATGCGTCTGTTTGGTATCTATAAATTTGTTCAGTTAAAAGC
TTTCTAGACCAT

BS08832.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5262-RB 1530 CG5262-PB 1..1530 17..1546 7650 100 Plus
CG5262-RA 1530 CG5262-PA 1..1530 17..1546 7650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5262-RB 2033 CG5262-RB 113..1642 17..1546 7650 100 Plus
CG5262-RA 1895 CG5262-RA 113..1642 17..1546 7650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20428353..20429117 1546..782 3825 100 Minus
3L 28110227 3L 20429516..20430010 561..67 2475 100 Minus
3L 28110227 3L 20429169..20429390 782..561 1110 100 Minus
3L 28110227 3L 20430311..20430363 69..17 265 100 Minus
Blast to na_te.dros performed on 2014-11-27 02:02:41 has no hits.

BS08832.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:01:05 Download gff for BS08832.complete
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 1..1530 17..1546 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:38:16 Download gff for BS08832.complete
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 116..1658 11..1555 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:04 Download gff for BS08832.complete
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 113..1640 17..1544 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:01:05 Download gff for BS08832.complete
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 116..1658 11..1555 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:29 Download gff for BS08832.complete
Subject Subject Range Query Range Percent Splice Strand
CG5262-RA 113..1640 17..1544 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:29 Download gff for BS08832.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20428355..20429116 783..1544 100 <- Minus
3L 20429169..20429389 562..782 100 <- Minus
3L 20429516..20430009 68..561 100 <- Minus
3L 20430313..20430363 17..67 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:04 Download gff for BS08832.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20421455..20422216 783..1544 100 <- Minus
arm_3L 20422269..20422489 562..782 100 <- Minus
arm_3L 20422616..20423109 68..561 100 <- Minus
arm_3L 20423413..20423463 17..67 100   Minus

BS08832.pep Sequence

Translation from 16 to 1545

> BS08832.pep
MPRLVNGREAAPTYSNLVGFIFIFNLIVGTGALTLPGVFARAGWMLSLIV
IVLLAIISYMTVTFIIEAMACANAIRNWQTLQALRQSRSSAENSENDDNA
DDVSLASGAEQVGDFERVPLTIQNREFHYYQLSHKFELGEMATLFFNEFG
RVMFYLCLIVYLYGDLSIYSAAVARSLRDVVCDQTNGTDTNNLMYWPGDF
ENNTSLACWKEHTISRLNMYRVLLIGFTLIFGPFVYFNVQKTKYLQMLTA
AFRWMAFTLMICISLKLLISRGAKGHPATFNVYGIPSLFGACVYSFMCHH
SLPSLLAPIRHKSMVSKILSIDYIIICAFYILLAMTGIFAFERIEDLYTL
DFLPYDVAYVDFWSGLLICIDYFLALFPIFTLSTSFPIVAITLKNNLQSL
FLDMSQYESYSVILRLCFPLLAIIPPFCITYFTESLSSLVAFTGTYAGTG
IQYIIPVFLVYFARRTCSELLGSGVVNRFKSPFKSSAWLVFVFIWSILCV
CLVSINLFS*

BS08832.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5262-PB 509 CG5262-PB 1..509 1..509 2643 100 Plus
CG5262-PA 509 CG5262-PA 1..509 1..509 2643 100 Plus